HEADER PROTEIN BINDING 28-OCT-14 2MW5 TITLE BACKBONE FOLD OF HUMAN SMALL UBIQUITIN LIKE MODIFIER PROTEIN-1 (SUMO- TITLE 2 1) BASED ON PROT3D-NMR APPROACH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUMO-1, GAP-MODIFYING PROTEIN 1, GMP1, SMT3 HOMOLOG 3, COMPND 5 SENTRIN, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE COMPND 6 PROTEIN SMT3C, SMT3C, UBIQUITIN-LIKE PROTEIN UBL1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 LAMBDA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PQE80L KEYWDS HUMAN SUMO, SMALL UBIQUITIN LIKE MODIFIER, SUMO-1, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.KUMAR,N.JAISWAL,N.RAIKWAL,V.SHUKLA,A.ARORA REVDAT 2 14-JUN-23 2MW5 1 REMARK REVDAT 1 03-DEC-14 2MW5 0 JRNL AUTH D.KUMAR,N.JAISWAL,N.RAIKWAL,V.K.SHUKLA,A.ARORA JRNL TITL PROT3DNMR: A SIMPLE AND SWIFT NMR STRATEGY FOR JRNL TITL 2 THREE-DIMENTIONAL STRUCTUTRAL DETERMINATION OF PROTEINS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA 9.8, CYANA REMARK 3 AUTHORS : KELLER AND WUTHRICH (CARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000104118. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1 MM [U-100% 13C; U-100% REMARK 210 15N] SODIUM PHOSPHATE-1, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D HNCO; 3D HNCA; 3D H(CCO)NH; REMARK 210 3D 1H-13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 4 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 5 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 6 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 7 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 7 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 7 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 8 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 8 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 9 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 9 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 10 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 10 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 10 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 40 40.43 -81.26 REMARK 500 1 ASN A 63 0.59 -69.52 REMARK 500 2 ASP A 18 49.28 -86.00 REMARK 500 2 GLU A 86 -40.13 60.02 REMARK 500 2 GLU A 87 -57.65 -130.39 REMARK 500 3 GLU A 21 -23.39 60.15 REMARK 500 3 GLU A 87 -54.52 -148.51 REMARK 500 4 GLU A 21 13.87 57.01 REMARK 500 4 GLN A 32 -52.16 60.87 REMARK 500 4 GLU A 86 -26.96 64.72 REMARK 500 5 SER A 12 16.78 59.10 REMARK 500 5 GLU A 21 -159.96 56.01 REMARK 500 5 GLU A 88 160.75 62.08 REMARK 500 5 ASP A 89 -80.83 -134.50 REMARK 500 6 GLU A 14 -33.10 63.70 REMARK 500 6 GLU A 86 -38.21 61.87 REMARK 500 7 SER A 12 18.49 54.27 REMARK 500 7 LYS A 28 72.84 -118.85 REMARK 500 7 GLU A 86 174.67 66.58 REMARK 500 8 ASP A 18 -67.64 59.41 REMARK 500 8 LYS A 40 98.80 -69.88 REMARK 500 8 GLU A 86 -18.02 62.38 REMARK 500 9 GLU A 86 -40.64 61.97 REMARK 500 10 LYS A 19 -36.47 64.49 REMARK 500 10 GLU A 21 -162.45 56.48 REMARK 500 10 GLU A 86 -80.04 38.83 REMARK 500 10 GLU A 88 171.53 56.75 REMARK 500 10 ASP A 89 -22.80 -147.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A5R RELATED DB: PDB REMARK 900 RELATED ID: 2ASQ RELATED DB: PDB REMARK 900 RELATED ID: 25299 RELATED DB: BMRB DBREF 2MW5 A 4 100 UNP P63165 SUMO1_HUMAN 1 97 SEQRES 1 A 97 MET SER ASP GLN GLU ALA LYS PRO SER THR GLU ASP LEU SEQRES 2 A 97 GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL SEQRES 3 A 97 ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS SEQRES 4 A 97 MET THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR CYS SEQRES 5 A 97 GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU SEQRES 6 A 97 PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS SEQRES 7 A 97 GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR SEQRES 8 A 97 GLN GLU GLN THR GLY GLY HELIX 1 1 HIS A 46 GLY A 59 1 14 HELIX 2 2 PRO A 61 ASN A 63 5 3 HELIX 3 3 THR A 79 GLY A 84 1 6 SHEET 1 A 3 GLN A 72 ARG A 73 0 SHEET 2 A 3 LEU A 65 PHE A 69 -1 N PHE A 69 O GLN A 72 SHEET 3 A 3 GLU A 92 GLN A 95 -1 O GLU A 92 N LEU A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1