HEADER DNA BINDING PROTEIN 31-OCT-14 2MW8 TITLE SOLUTION STRUCTURE OF SATB1 HOMEODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 641-707; COMPND 5 SYNONYM: SPECIAL AT-RICH SEQUENCE-BINDING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SATB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.YAMASAKI,T.YAMASAKI REVDAT 2 14-JUN-23 2MW8 1 REMARK SEQADV REVDAT 1 04-NOV-15 2MW8 0 JRNL AUTH K.YAMASAKI,T.YAMASAKI JRNL TITL SOLUTION STRUCTURE OF SATB1 HOMEODOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000104121. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 0.1; 0.25 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] SATB1 HOMEODOMAIN REMARK 210 -1, 50 MM SODIUM PHOSPHATE-2, 50 REMARK 210 MM SODIUM CHLORIDE-3, 0.5 MM DSS- REMARK 210 4, 95% H2O/5% D2O; 0.7-1.2 MM [U- REMARK 210 15N] SATB1 HOMEODOMAIN-5, 50 MM REMARK 210 SODIUM PHOSPHATE-6, 200 MM REMARK 210 SODIUM CHLORIDE-7, 0.5 MM DSS-8, REMARK 210 95% H2O/5% D2O; 0.7-1.2 MM SATB1 REMARK 210 HOMEODOMAIN-9, 50 MM SODIUM REMARK 210 PHOSPHATE-10, 200 MM SODIUM REMARK 210 CHLORIDE-11, 0.5 MM DSS-12, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 2D 1H-1H NOESY; REMARK 210 2D DQF-COSY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 637 REMARK 465 SER A 638 REMARK 465 HIS A 639 REMARK 465 MET A 640 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 642 117.51 -169.02 REMARK 500 1 LYS A 644 31.50 -140.75 REMARK 500 1 LYS A 650 70.82 63.07 REMARK 500 1 ILE A 651 125.16 63.34 REMARK 500 1 LEU A 668 51.21 -114.85 REMARK 500 1 TYR A 669 69.90 -152.62 REMARK 500 1 PRO A 685 -179.25 -51.95 REMARK 500 1 HIS A 702 -75.58 -59.32 REMARK 500 1 LYS A 705 124.01 -170.09 REMARK 500 2 ARG A 642 174.29 60.86 REMARK 500 2 ARG A 646 61.99 -153.75 REMARK 500 2 ARG A 648 95.94 -174.43 REMARK 500 2 ILE A 651 115.60 65.14 REMARK 500 2 ASP A 665 -64.84 -91.94 REMARK 500 2 LEU A 668 -67.75 -137.46 REMARK 500 2 PRO A 685 172.58 -50.95 REMARK 500 2 LEU A 700 40.34 -96.12 REMARK 500 2 LYS A 701 -49.78 -173.69 REMARK 500 2 LEU A 706 -65.77 -93.88 REMARK 500 3 ARG A 648 165.49 60.54 REMARK 500 3 ILE A 651 141.60 64.53 REMARK 500 3 LEU A 668 31.85 -164.71 REMARK 500 3 TYR A 669 57.12 -143.33 REMARK 500 3 PRO A 685 -176.16 -56.15 REMARK 500 4 ARG A 642 98.34 -165.27 REMARK 500 4 ARG A 646 88.99 -152.85 REMARK 500 4 ILE A 651 118.24 63.02 REMARK 500 4 LEU A 668 -57.05 -153.21 REMARK 500 4 PRO A 685 -176.14 -52.62 REMARK 500 4 HIS A 703 -80.25 -75.56 REMARK 500 4 LEU A 706 -65.72 -101.17 REMARK 500 5 ARG A 642 150.89 62.31 REMARK 500 5 LYS A 644 32.94 -143.57 REMARK 500 5 SER A 652 178.16 -59.29 REMARK 500 5 TYR A 669 72.79 -155.87 REMARK 500 5 PRO A 685 177.01 -51.68 REMARK 500 5 LYS A 701 32.85 -171.60 REMARK 500 5 HIS A 702 -81.20 -173.87 REMARK 500 5 HIS A 703 -176.53 -178.29 REMARK 500 6 ARG A 642 151.85 62.02 REMARK 500 6 GLN A 643 100.85 -169.49 REMARK 500 6 THR A 645 103.60 55.69 REMARK 500 6 ARG A 648 148.41 62.25 REMARK 500 6 LYS A 650 160.99 59.37 REMARK 500 6 ASP A 665 -82.49 -107.77 REMARK 500 6 LEU A 668 -37.51 175.21 REMARK 500 6 TYR A 669 56.86 -140.84 REMARK 500 6 PRO A 685 -176.71 -52.50 REMARK 500 6 LEU A 700 39.04 -97.20 REMARK 500 6 LYS A 701 -47.18 -149.45 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25307 RELATED DB: BMRB DBREF 2MW8 A 641 707 UNP Q01826 SATB1_HUMAN 641 707 SEQADV 2MW8 GLY A 637 UNP Q01826 EXPRESSION TAG SEQADV 2MW8 SER A 638 UNP Q01826 EXPRESSION TAG SEQADV 2MW8 HIS A 639 UNP Q01826 EXPRESSION TAG SEQADV 2MW8 MET A 640 UNP Q01826 EXPRESSION TAG SEQRES 1 A 71 GLY SER HIS MET ASN ARG GLN LYS THR ARG PRO ARG THR SEQRES 2 A 71 LYS ILE SER VAL GLU ALA LEU GLY ILE LEU GLN SER PHE SEQRES 3 A 71 ILE GLN ASP VAL GLY LEU TYR PRO ASP GLU GLU ALA ILE SEQRES 4 A 71 GLN THR LEU SER ALA GLN LEU ASP LEU PRO LYS TYR THR SEQRES 5 A 71 ILE ILE LYS PHE PHE GLN ASN GLN ARG TYR TYR LEU LYS SEQRES 6 A 71 HIS HIS GLY LYS LEU LYS HELIX 1 1 SER A 652 VAL A 666 1 15 HELIX 2 2 ASP A 671 LEU A 682 1 12 HELIX 3 3 LYS A 686 HIS A 703 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1