HEADER PROTEIN BINDING 11-NOV-14 2MWI TITLE THE STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF DNTTIP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOXY-TERMINAL DOMAIN (UNP RESIDUES 197-316); COMPND 5 SYNONYM: TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE-INTERACTING FACTOR 1, COMPND 6 TDIF1, TDT-INTERACTING FACTOR 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNTTIP1, C20ORF167, TDIF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS HDAC, HISTONE DEACETYLASE, GENE EXPRESSION, DNTTIP1, MIDEAS, HDAC1, KEYWDS 2 TDIF1, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 65 AUTHOR J.W.R.SCHWABE,F.W.MUSKETT,T.ITOH REVDAT 2 18-MAR-15 2MWI 1 JRNL REVDAT 1 18-FEB-15 2MWI 0 JRNL AUTH T.ITOH,L.FAIRALL,F.W.MUSKETT,C.P.MILANO,P.J.WATSON, JRNL AUTH 2 N.ARNAUDO,A.SALEH,C.J.MILLARD,M.EL-MEZGUELDI,F.MARTINO, JRNL AUTH 3 J.W.SCHWABE JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A CELL CYCLE JRNL TITL 2 ASSOCIATED HDAC1/2 COMPLEX REVEALS THE STRUCTURAL BASIS FOR JRNL TITL 3 COMPLEX ASSEMBLY AND NUCLEOSOME TARGETING. JRNL REF NUCLEIC ACIDS RES. V. 43 2033 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25653165 JRNL DOI 10.1093/NAR/GKV068 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-14. REMARK 100 THE RCSB ID CODE IS RCSB104131. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 80; 80 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 DNTTIP1(197-316), 40 MM POTASSIUM REMARK 210 PHOSPHATE, 1 MM DTT, 1 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.3 MM [U REMARK 210 -100% 13C; U-100% 15N] REMARK 210 DNTTIP1(197-316), 40 MM POTASSIUM REMARK 210 PHOSPHATE, 1 MM DTT, 1 MM SODIUM REMARK 210 AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HN(CO)CA; 3D HNHA; REMARK 210 3D HBHA(CO)NH; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 2D 1H-13C REMARK 210 HSQC; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, TOPSPIN 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 65 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 201 -50.65 -147.81 REMARK 500 1 TRP A 202 -42.95 -154.78 REMARK 500 1 LEU A 215 -176.93 -67.02 REMARK 500 1 THR A 228 -61.08 -136.36 REMARK 500 1 ARG A 229 -70.15 -117.57 REMARK 500 1 ILE A 234 -60.32 -144.81 REMARK 500 1 HIS A 236 73.69 -113.68 REMARK 500 1 SER A 280 -171.71 -59.59 REMARK 500 1 ARG A 284 102.99 -48.68 REMARK 500 2 ALA A 196 -174.28 59.65 REMARK 500 2 GLU A 198 72.49 -102.48 REMARK 500 2 LYS A 201 -50.90 -147.69 REMARK 500 2 TRP A 202 -43.88 -153.47 REMARK 500 2 SER A 217 -50.93 -156.70 REMARK 500 2 ARG A 229 -71.30 -147.69 REMARK 500 2 ILE A 234 -61.21 -144.92 REMARK 500 2 SER A 280 -169.45 -60.48 REMARK 500 2 ARG A 284 104.03 -47.30 REMARK 500 3 ALA A 196 177.15 -59.84 REMARK 500 3 LYS A 201 -50.74 -147.76 REMARK 500 3 TRP A 202 -43.56 -154.09 REMARK 500 3 ARG A 218 -39.93 -164.37 REMARK 500 3 THR A 228 -36.97 -173.67 REMARK 500 3 ILE A 234 -60.21 -145.05 REMARK 500 3 HIS A 236 73.34 -113.83 REMARK 500 3 LYS A 264 57.82 -176.51 REMARK 500 3 SER A 280 -169.71 -60.84 REMARK 500 3 ARG A 284 104.00 -46.80 REMARK 500 4 GLU A 198 65.58 -105.70 REMARK 500 4 LYS A 201 -50.63 -147.89 REMARK 500 4 TRP A 202 -43.12 -154.58 REMARK 500 4 SER A 217 -65.48 -179.61 REMARK 500 4 ARG A 229 39.65 -94.26 REMARK 500 4 ILE A 234 -62.51 -145.29 REMARK 500 4 HIS A 236 73.68 -113.72 REMARK 500 4 LEU A 239 109.95 -59.89 REMARK 500 4 ARG A 259 42.76 -165.28 REMARK 500 4 ARG A 284 104.04 -48.42 REMARK 500 5 LYS A 201 -50.19 -147.86 REMARK 500 5 TRP A 202 -41.20 -156.91 REMARK 500 5 SER A 217 123.85 66.58 REMARK 500 5 ILE A 234 -64.29 -145.57 REMARK 500 5 HIS A 236 73.46 -113.84 REMARK 500 5 MET A 258 93.22 56.60 REMARK 500 5 ARG A 259 29.73 -153.17 REMARK 500 5 SER A 280 -169.86 -60.34 REMARK 500 5 ARG A 284 102.54 -49.86 REMARK 500 5 GLU A 293 36.47 -97.33 REMARK 500 6 GLU A 198 50.48 -101.03 REMARK 500 6 LYS A 201 -50.90 -148.00 REMARK 500 REMARK 500 THIS ENTRY HAS 659 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25326 RELATED DB: BMRB DBREF 2MWI A 197 316 UNP Q9H147 TDIF1_HUMAN 197 316 SEQADV 2MWI GLY A 195 UNP Q9H147 EXPRESSION TAG SEQADV 2MWI ALA A 196 UNP Q9H147 EXPRESSION TAG SEQRES 1 A 122 GLY ALA ARG GLU GLY PRO LYS TRP ASP PRO ALA ARG LEU SEQRES 2 A 122 ASN GLU SER THR THR PHE VAL LEU GLY SER ARG ALA ASN SEQRES 3 A 122 LYS ALA LEU GLY MET GLY GLY THR ARG GLY ARG ILE TYR SEQRES 4 A 122 ILE LYS HIS PRO HIS LEU PHE LYS TYR ALA ALA ASP PRO SEQRES 5 A 122 GLN ASP LYS HIS TRP LEU ALA GLU GLN HIS HIS MET ARG SEQRES 6 A 122 ALA THR GLY GLY LYS MET ALA TYR LEU LEU ILE GLU GLU SEQRES 7 A 122 ASP ILE ARG ASP LEU ALA ALA SER ASP ASP TYR ARG GLY SEQRES 8 A 122 CYS LEU ASP LEU LYS LEU GLU GLU LEU LYS SER PHE VAL SEQRES 9 A 122 LEU PRO SER TRP MET VAL GLU LYS MET ARG LYS TYR MET SEQRES 10 A 122 GLU THR LEU ARG THR HELIX 1 1 ASP A 203 LEU A 207 5 5 HELIX 2 2 ASP A 248 HIS A 257 1 10 HELIX 3 3 GLU A 271 ALA A 278 1 8 HELIX 4 4 LYS A 290 LEU A 294 5 5 HELIX 5 5 TRP A 302 THR A 316 1 15 SHEET 1 A 3 PHE A 213 VAL A 214 0 SHEET 2 A 3 TYR A 267 ILE A 270 -1 O LEU A 269 N VAL A 214 SHEET 3 A 3 TYR A 242 ALA A 243 -1 N TYR A 242 O LEU A 268 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1