HEADER HYDROLASE 12-NOV-14 2MWK TITLE FAMILY 1 CARBOHYDRATE-BINDING MODULE FROM TRICHODERMA REESEI CEL7A TITLE 2 WITH O-MANNOSE RESIDUES AT THR1, SER3, AND SER14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOGLUCANASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBM1 DOMAIN RESIDUES 478-513; COMPND 5 SYNONYM: 1,4-BETA-CELLOBIOHYDROLASE, EXOCELLOBIOHYDROLASE I, CBHI, COMPND 6 EXOGLUCANASE I; COMPND 7 EC: 3.2.1.91; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: TRICHODERMA REESEI; SOURCE 4 ORGANISM_TAXID: 51453 KEYWDS O-GLYCOSYLATION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.M.HAPPS,L.CHEN,M.G.RESCH,M.F.DAVIS,G.T.BECKHAM,Z.TAN,M.F.CROWLEY REVDAT 6 20-NOV-24 2MWK 1 HETSYN REVDAT 5 29-JUL-20 2MWK 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 03-FEB-16 2MWK 1 JRNL REVDAT 3 16-SEP-15 2MWK 1 JRNL REVDAT 2 09-SEP-15 2MWK 1 JRNL REVDAT 1 02-SEP-15 2MWK 0 JRNL AUTH R.M.HAPPS,X.GUAN,M.G.RESCH,M.F.DAVIS,G.T.BECKHAM,Z.TAN, JRNL AUTH 2 M.F.CROWLEY JRNL TITL O-GLYCOSYLATION EFFECTS ON FAMILY 1 CARBOHYDRATE-BINDING JRNL TITL 2 MODULE SOLUTION STRUCTURES. JRNL REF FEBS J. V. 282 4341 2015 JRNL REFN ISSN 1742-464X JRNL PMID 26307003 JRNL DOI 10.1111/FEBS.13500 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, XPLOR-NIH, CHARMM_DOMDEC REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (XPLOR-NIH), BROOKS, BRUCCOLERI, REMARK 3 OLAFSON, STATES, SWAMINATHAN, AND KARPLUS (CHARMM_ REMARK 3 DOMDEC) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 30 CONFORMERS INITIALLY CALCULATED WERE REMARK 3 REFINED WITH 4 ROUNDS OF SA, FINAL SELECTION OF STRUCTURES FOR REMARK 3 SUBMISSION WAS DONE BASED ON THE BEHAVIOR OF THE MODELS DURING REMARK 3 THE 200 NS TRAJECTORIES: ONLY MODELS WHICH STAYED WITHIN 3 RMSD REMARK 3 OF THE STARTING STRUCTURES WERE SELECTED. REMARK 4 REMARK 4 2MWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000104133. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 288 REMARK 210 PH : 5; 5 REMARK 210 IONIC STRENGTH : 30; 30 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MG CBM_3M, 90% H2O/10% D2O; REMARK 210 1.5 MG CBM_3M, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, XPLOR-NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : MOLECULAR DYNAMICS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 32 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 TYR A 32 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 3 TYR A 32 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 TYR A 32 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 5 TYR A 32 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 TYR A 32 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 7 TYR A 32 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 8 TYR A 32 CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 8 TYR A 32 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 134.07 -39.59 REMARK 500 1 ALA A 20 152.95 -36.98 REMARK 500 2 GLN A 2 -94.44 -96.99 REMARK 500 2 TYR A 5 16.09 80.45 REMARK 500 2 ALA A 20 156.44 -40.11 REMARK 500 2 SER A 21 2.26 -65.52 REMARK 500 3 ALA A 20 148.57 -36.16 REMARK 500 4 PRO A 16 153.04 -42.07 REMARK 500 4 ALA A 20 150.28 -38.53 REMARK 500 4 TYR A 32 98.79 -165.45 REMARK 500 5 ALA A 20 154.09 -37.55 REMARK 500 6 ALA A 20 152.93 -34.30 REMARK 500 6 TYR A 32 105.61 -160.53 REMARK 500 7 ALA A 20 146.75 -38.54 REMARK 500 8 GLN A 2 -83.47 -102.25 REMARK 500 8 ALA A 20 146.53 -32.23 REMARK 500 9 GLN A 2 -89.40 -102.69 REMARK 500 9 TYR A 5 6.34 83.72 REMARK 500 9 ALA A 20 145.88 -33.98 REMARK 500 10 SER A 14 15.87 -140.98 REMARK 500 10 CYS A 19 142.67 59.74 REMARK 500 10 TYR A 32 106.16 -162.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 31 0.07 SIDE CHAIN REMARK 500 2 TYR A 32 0.07 SIDE CHAIN REMARK 500 4 TYR A 31 0.07 SIDE CHAIN REMARK 500 9 TYR A 31 0.08 SIDE CHAIN REMARK 500 10 TYR A 31 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CBH RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I REMARK 900 RELATED ID: 25332 RELATED DB: BMRB REMARK 900 RELATED ID: 2MWJ RELATED DB: PDB DBREF 2MWK A 1 36 UNP P62694 GUX1_HYPJE 478 513 SEQRES 1 A 36 THR GLN SER HIS TYR GLY GLN CYS GLY GLY ILE GLY TYR SEQRES 2 A 36 SER GLY PRO THR VAL CYS ALA SER GLY THR THR CYS GLN SEQRES 3 A 36 VAL LEU ASN PRO TYR TYR SER GLN CYS LEU MODRES 2MWK SER A 3 SER GLYCOSYLATION SITE MODRES 2MWK SER A 14 SER GLYCOSYLATION SITE MODRES 2MWK THR A 1 THR GLYCOSYLATION SITE HET MAN A 101 23 HET MAN A 102 23 HET MAN A 103 23 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 MAN 3(C6 H12 O6) SHEET 1 A 3 GLN A 7 GLY A 10 0 SHEET 2 A 3 TYR A 32 LEU A 36 -1 O SER A 33 N GLY A 9 SHEET 3 A 3 THR A 24 ASN A 29 -1 N THR A 24 O LEU A 36 SSBOND 1 CYS A 8 CYS A 25 1555 1555 2.04 SSBOND 2 CYS A 19 CYS A 35 1555 1555 2.02 LINK CB THR A 1 O1 MAN A 101 1555 1555 1.43 LINK CB SER A 3 O1 MAN A 102 1555 1555 1.42 LINK CB SER A 14 O1 MAN A 103 1555 1555 1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL CONECT 5 498 CONECT 36 521 CONECT 109 306 CONECT 179 544 CONECT 240 466 CONECT 306 109 CONECT 466 240 CONECT 492 493 498 502 504 CONECT 493 492 494 499 505 CONECT 494 493 495 500 506 CONECT 495 494 496 501 507 CONECT 496 495 497 502 508 CONECT 497 496 503 509 510 CONECT 498 5 492 CONECT 499 493 511 CONECT 500 494 512 CONECT 501 495 513 CONECT 502 492 496 CONECT 503 497 514 CONECT 504 492 CONECT 505 493 CONECT 506 494 CONECT 507 495 CONECT 508 496 CONECT 509 497 CONECT 510 497 CONECT 511 499 CONECT 512 500 CONECT 513 501 CONECT 514 503 CONECT 515 516 521 525 527 CONECT 516 515 517 522 528 CONECT 517 516 518 523 529 CONECT 518 517 519 524 530 CONECT 519 518 520 525 531 CONECT 520 519 526 532 533 CONECT 521 36 515 CONECT 522 516 534 CONECT 523 517 535 CONECT 524 518 536 CONECT 525 515 519 CONECT 526 520 537 CONECT 527 515 CONECT 528 516 CONECT 529 517 CONECT 530 518 CONECT 531 519 CONECT 532 520 CONECT 533 520 CONECT 534 522 CONECT 535 523 CONECT 536 524 CONECT 537 526 CONECT 538 539 544 548 550 CONECT 539 538 540 545 551 CONECT 540 539 541 546 552 CONECT 541 540 542 547 553 CONECT 542 541 543 548 554 CONECT 543 542 549 555 556 CONECT 544 179 538 CONECT 545 539 557 CONECT 546 540 558 CONECT 547 541 559 CONECT 548 538 542 CONECT 549 543 560 CONECT 550 538 CONECT 551 539 CONECT 552 540 CONECT 553 541 CONECT 554 542 CONECT 555 543 CONECT 556 543 CONECT 557 545 CONECT 558 546 CONECT 559 547 CONECT 560 549 MASTER 165 0 3 0 3 0 0 6 293 1 76 3 END