HEADER HYDROLASE 12-NOV-14 2MWK TITLE FAMILY 1 CARBOHYDRATE-BINDING MODULE FROM TRICHODERMA REESEI CEL7A TITLE 2 WITH O-MANNOSE RESIDUES AT THR1, SER3, AND SER14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOGLUCANASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBM1 DOMAIN RESIDUES 478-513; COMPND 5 SYNONYM: 1,4-BETA-CELLOBIOHYDROLASE, EXOCELLOBIOHYDROLASE I, CBHI, COMPND 6 EXOGLUCANASE I; COMPND 7 EC: 3.2.1.91; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: TRICHODERMA REESEI; SOURCE 4 ORGANISM_TAXID: 51453 KEYWDS O-GLYCOSYLATION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.M.HAPPS,L.CHEN,M.G.RESCH,M.F.DAVIS,G.T.BECKHAM,Z.TAN,M.F.CROWLEY REVDAT 5 29-JUL-20 2MWK 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 03-FEB-16 2MWK 1 JRNL REVDAT 3 16-SEP-15 2MWK 1 JRNL REVDAT 2 09-SEP-15 2MWK 1 JRNL REVDAT 1 02-SEP-15 2MWK 0 JRNL AUTH R.M.HAPPS,X.GUAN,M.G.RESCH,M.F.DAVIS,G.T.BECKHAM,Z.TAN, JRNL AUTH 2 M.F.CROWLEY JRNL TITL O-GLYCOSYLATION EFFECTS ON FAMILY 1 CARBOHYDRATE-BINDING JRNL TITL 2 MODULE SOLUTION STRUCTURES. JRNL REF FEBS J. V. 282 4341 2015 JRNL REFN ISSN 1742-464X JRNL PMID 26307003 JRNL DOI 10.1111/FEBS.13500 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, XPLOR-NIH, CHARMM_DOMDEC REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (XPLOR-NIH), BROOKS, BRUCCOLERI, REMARK 3 OLAFSON, STATES, SWAMINATHAN, AND KARPLUS (CHARMM_ REMARK 3 DOMDEC) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 30 CONFORMERS INITIALLY CALCULATED WERE REMARK 3 REFINED WITH 4 ROUNDS OF SA, FINAL SELECTION OF STRUCTURES FOR REMARK 3 SUBMISSION WAS DONE BASED ON THE BEHAVIOR OF THE MODELS DURING REMARK 3 THE 200 NS TRAJECTORIES: ONLY MODELS WHICH STAYED WITHIN 3 RMSD REMARK 3 OF THE STARTING STRUCTURES WERE SELECTED. REMARK 4 REMARK 4 2MWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000104133. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 288 REMARK 210 PH : 5; 5 REMARK 210 IONIC STRENGTH : 30; 30 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MG CBM_3M, 90% H2O/10% D2O; REMARK 210 1.5 MG CBM_3M, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, XPLOR-NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : MOLECULAR DYNAMICS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 32 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 TYR A 32 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 3 TYR A 32 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 TYR A 32 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 5 TYR A 32 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 TYR A 32 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 7 TYR A 32 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 8 TYR A 32 CB - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 8 TYR A 32 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 134.07 -39.59 REMARK 500 1 ALA A 20 152.95 -36.98 REMARK 500 2 GLN A 2 -94.44 -96.99 REMARK 500 2 TYR A 5 16.09 80.45 REMARK 500 2 ALA A 20 156.44 -40.11 REMARK 500 2 SER A 21 2.26 -65.52 REMARK 500 3 ALA A 20 148.57 -36.16 REMARK 500 4 PRO A 16 153.04 -42.07 REMARK 500 4 ALA A 20 150.28 -38.53 REMARK 500 4 TYR A 32 98.79 -165.45 REMARK 500 5 ALA A 20 154.09 -37.55 REMARK 500 6 ALA A 20 152.93 -34.30 REMARK 500 6 TYR A 32 105.61 -160.53 REMARK 500 7 ALA A 20 146.75 -38.54 REMARK 500 8 GLN A 2 -83.47 -102.25 REMARK 500 8 ALA A 20 146.53 -32.23 REMARK 500 9 GLN A 2 -89.40 -102.69 REMARK 500 9 TYR A 5 6.34 83.72 REMARK 500 9 ALA A 20 145.88 -33.98 REMARK 500 10 SER A 14 15.87 -140.98 REMARK 500 10 CYS A 19 142.67 59.74 REMARK 500 10 TYR A 32 106.16 -162.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 31 0.07 SIDE CHAIN REMARK 500 2 TYR A 32 0.07 SIDE CHAIN REMARK 500 4 TYR A 31 0.07 SIDE CHAIN REMARK 500 9 TYR A 31 0.08 SIDE CHAIN REMARK 500 10 TYR A 31 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CBH RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I REMARK 900 RELATED ID: 25332 RELATED DB: BMRB REMARK 900 RELATED ID: 2MWJ RELATED DB: PDB DBREF 2MWK A 1 36 UNP P62694 GUX1_HYPJE 478 513 SEQRES 1 A 36 THR GLN SER HIS TYR GLY GLN CYS GLY GLY ILE GLY TYR SEQRES 2 A 36 SER GLY PRO THR VAL CYS ALA SER GLY THR THR CYS GLN SEQRES 3 A 36 VAL LEU ASN PRO TYR TYR SER GLN CYS LEU MODRES 2MWK SER A 3 SER GLYCOSYLATION SITE MODRES 2MWK SER A 14 SER GLYCOSYLATION SITE MODRES 2MWK THR A 1 THR GLYCOSYLATION SITE HET MAN A 101 23 HET MAN A 102 23 HET MAN A 103 23 HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 2 MAN 3(C6 H12 O6) SHEET 1 A 3 GLN A 7 GLY A 10 0 SHEET 2 A 3 TYR A 32 LEU A 36 -1 O SER A 33 N GLY A 9 SHEET 3 A 3 THR A 24 ASN A 29 -1 N THR A 24 O LEU A 36 SSBOND 1 CYS A 8 CYS A 25 1555 1555 2.04 SSBOND 2 CYS A 19 CYS A 35 1555 1555 2.02 LINK CB THR A 1 O1 MAN A 101 1555 1555 1.43 LINK CB SER A 3 O1 MAN A 102 1555 1555 1.42 LINK CB SER A 14 O1 MAN A 103 1555 1555 1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1