HEADER PEPTIDE BINDING PROTEIN 15-DEC-14 2MX6 TITLE COMPLEX STRUCTURE OF DVL PDZ DOMAIN WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 248-337; COMPND 5 SYNONYM: DISHEVELLED-1, DSH HOMOLOG 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: (PHQ)WV PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DVL1, DVL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PDZ, DVL, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.ZHANG,J.J.ZHENG REVDAT 1 30-DEC-15 2MX6 0 JRNL AUTH X.ZHANG,J.J.ZHENG JRNL TITL PROTEIN-LIGAND INTERACTION DECODED BY NMR CHEMICAL SHIFT JRNL TITL 2 ANALYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-14. REMARK 100 THE RCSB ID CODE IS RCSB104155. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 10 MM PEPTIDE, 100 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNCA; 3D HNCACB; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 271 -152.06 -91.76 REMARK 500 1 ASP A 292 -82.21 -89.69 REMARK 500 1 LEU A 302 -72.54 -102.69 REMARK 500 1 ASN A 305 73.87 60.47 REMARK 500 1 ASP A 306 -50.03 75.86 REMARK 500 1 SER A 326 33.17 -90.21 REMARK 500 2 ASP A 292 -72.52 -88.27 REMARK 500 2 LEU A 302 -72.47 -105.47 REMARK 500 2 ASN A 305 62.93 61.40 REMARK 500 2 ASP A 306 -45.94 75.12 REMARK 500 3 ASN A 271 -163.43 -77.57 REMARK 500 3 ASP A 292 -77.12 -86.83 REMARK 500 3 LEU A 302 -69.09 -101.29 REMARK 500 3 ASN A 305 72.90 58.83 REMARK 500 3 ASP A 306 -48.40 78.30 REMARK 500 3 GLU A 310 6.11 -68.73 REMARK 500 3 ASN A 311 33.72 -150.25 REMARK 500 4 ASP A 272 -66.13 -145.03 REMARK 500 4 ASP A 292 -72.81 -86.33 REMARK 500 4 LEU A 302 -71.22 -105.80 REMARK 500 4 ASN A 305 75.40 59.09 REMARK 500 4 ASP A 306 -58.85 76.72 REMARK 500 5 MET A 256 32.00 -95.80 REMARK 500 5 ASN A 271 -158.77 -174.67 REMARK 500 5 PRO A 297 94.34 -61.44 REMARK 500 5 LEU A 302 -73.31 -97.90 REMARK 500 5 ASN A 305 65.98 61.34 REMARK 500 5 ASP A 306 -52.90 74.87 REMARK 500 6 ASN A 271 -151.31 -92.74 REMARK 500 6 ASP A 292 -72.61 -77.11 REMARK 500 6 LEU A 302 -69.07 -106.25 REMARK 500 6 ASN A 305 65.69 62.88 REMARK 500 6 ASP A 306 -43.67 74.69 REMARK 500 7 LEU A 302 -72.57 -105.15 REMARK 500 7 ASN A 305 76.61 59.21 REMARK 500 7 ASP A 306 -53.37 75.21 REMARK 500 7 ASN A 311 53.35 -119.44 REMARK 500 8 ASN A 271 -148.51 -99.37 REMARK 500 8 ASP A 292 -80.25 -94.63 REMARK 500 8 LEU A 302 -77.12 -103.54 REMARK 500 8 ASN A 305 70.53 58.35 REMARK 500 8 ASP A 306 -53.36 76.51 REMARK 500 9 ASN A 271 -76.15 -75.66 REMARK 500 9 ASP A 272 -16.72 -145.29 REMARK 500 9 ASP A 292 -80.20 -91.80 REMARK 500 9 LEU A 302 -64.67 -102.12 REMARK 500 9 ASP A 306 -51.16 76.31 REMARK 500 10 ASN A 271 -149.77 -104.92 REMARK 500 10 ASP A 275 43.10 -103.61 REMARK 500 10 ASP A 292 -75.98 -91.14 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25394 RELATED DB: BMRB DBREF 2MX6 A 248 337 UNP P51141 DVL1_MOUSE 248 337 DBREF 2MX6 B 1 3 PDB 2MX6 2MX6 1 3 SEQRES 1 A 90 ASN ILE ILE THR VAL THR LEU ASN MET GLU ARG HIS HIS SEQRES 2 A 90 PHE LEU GLY ILE SER ILE VAL GLY GLN SER ASN ASP ARG SEQRES 3 A 90 GLY ASP GLY GLY ILE TYR ILE GLY SER ILE MET LYS GLY SEQRES 4 A 90 GLY ALA VAL ALA ALA ASP GLY ARG ILE GLU PRO GLY ASP SEQRES 5 A 90 MET LEU LEU GLN VAL ASN ASP VAL ASN PHE GLU ASN MET SEQRES 6 A 90 SER ASN ASP ASP ALA VAL ARG VAL LEU ARG GLU ILE VAL SEQRES 7 A 90 SER GLN THR GLY PRO ILE SER LEU THR VAL ALA LYS SEQRES 1 B 3 PHQ TRP VAL HET PHQ B 1 17 HETNAM PHQ BENZYL CHLOROCARBONATE FORMUL 2 PHQ C8 H7 CL O2 HELIX 1 1 GLY A 287 GLY A 293 1 7 HELIX 2 2 SER A 313 SER A 326 1 14 SHEET 1 A 4 ILE A 249 LEU A 254 0 SHEET 2 A 4 ILE A 331 ALA A 336 -1 O LEU A 333 N VAL A 252 SHEET 3 A 4 MET A 300 VAL A 304 -1 N GLN A 303 O THR A 334 SHEET 4 A 4 VAL A 307 ASN A 308 -1 O VAL A 307 N VAL A 304 SHEET 1 B 2 ILE A 264 GLN A 269 0 SHEET 2 B 2 GLY A 277 ILE A 283 -1 O GLY A 281 N SER A 265 LINK C1 PHQ B 1 N TRP B 2 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1