HEADER VIRAL PROTEIN 24-DEC-14 2MXD TITLE SOLUTION STRUCTURE OF VPG OF PORCINE SAPOVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRAL PROTEIN GENOME-LINKED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 948-1006; COMPND 5 SYNONYM: VPG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ENTERIC SAPOVIRUS; SOURCE 3 ORGANISM_TAXID: 106333; SOURCE 4 GENE: ORF1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS VIRAL PROTEIN GENOME-LINKED, PORCINE SAPOVIRUS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.KIM,H.HWANG,H.MIN,H.YUN,K.CHO,J.G.PELTON,D.E.WEMMER,C.LEE REVDAT 2 14-JUN-23 2MXD 1 REMARK SEQADV REVDAT 1 15-APR-15 2MXD 0 JRNL AUTH H.J.HWANG,H.J.MIN,H.YUN,J.G.PELTON,D.E.WEMMER,K.O.CHO, JRNL AUTH 2 J.S.KIM,C.W.LEE JRNL TITL SOLUTION STRUCTURE OF THE PORCINE SAPOVIRUS VPG CORE REVEALS JRNL TITL 2 A STABLE THREE-HELICAL BUNDLE WITH A CONSERVED SURFACE JRNL TITL 3 PATCH. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 459 610 2015 JRNL REFN ISSN 0006-291X JRNL PMID 25753201 JRNL DOI 10.1016/J.BBRC.2015.02.156 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104162. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 10 MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 946 -173.54 51.64 REMARK 500 1 MET A 947 24.13 42.64 REMARK 500 1 ARG A 967 15.80 50.88 REMARK 500 2 MET A 947 24.01 41.85 REMARK 500 2 LEU A 951 167.04 54.18 REMARK 500 2 LYS A 968 -157.48 -162.48 REMARK 500 2 ASP A 988 152.41 -48.82 REMARK 500 2 ARG A1004 30.86 -85.29 REMARK 500 2 LEU A1005 99.29 -56.93 REMARK 500 3 LEU A 951 157.99 55.24 REMARK 500 4 ALA A 948 -174.52 42.40 REMARK 500 4 ALA A 950 42.49 -151.00 REMARK 500 4 LEU A 951 157.18 55.68 REMARK 500 4 LYS A 968 -149.91 -146.10 REMARK 500 4 ASP A 988 151.21 -42.37 REMARK 500 5 ARG A 967 14.74 55.52 REMARK 500 5 ASP A 988 151.04 -45.41 REMARK 500 6 ALA A 946 109.51 -171.46 REMARK 500 6 LYS A 968 -132.55 -152.78 REMARK 500 7 ALA A 950 45.17 -153.62 REMARK 500 7 ARG A 967 17.25 56.36 REMARK 500 7 LYS A 968 -141.90 -132.44 REMARK 500 7 ASP A 988 150.04 -43.18 REMARK 500 8 ALA A 946 -36.45 -170.23 REMARK 500 8 ALA A 948 -90.95 -159.34 REMARK 500 8 LEU A 951 171.50 52.63 REMARK 500 8 ARG A 967 14.92 52.76 REMARK 500 8 ASP A 988 150.22 -42.17 REMARK 500 8 LEU A1005 146.94 61.09 REMARK 500 9 ALA A 946 -160.85 -79.55 REMARK 500 9 ALA A 948 -165.51 50.53 REMARK 500 9 ALA A 950 -24.06 74.15 REMARK 500 9 ARG A 967 19.48 54.32 REMARK 500 10 ALA A 946 -170.75 44.31 REMARK 500 10 ALA A 948 -83.11 -43.74 REMARK 500 10 ALA A 950 28.55 -163.98 REMARK 500 10 LYS A 968 -146.82 -153.39 REMARK 500 10 ARG A1004 70.96 -57.43 REMARK 500 11 ALA A 948 32.36 -72.99 REMARK 500 11 ALA A 950 36.61 38.63 REMARK 500 11 LEU A 951 170.80 54.72 REMARK 500 11 ARG A 967 15.07 54.34 REMARK 500 11 ARG A1004 41.65 -82.54 REMARK 500 12 ILE A 949 171.21 -44.91 REMARK 500 12 ALA A 950 -2.72 -142.83 REMARK 500 12 ARG A 967 15.59 58.76 REMARK 500 13 ALA A 946 -62.77 -164.79 REMARK 500 13 MET A 947 17.27 47.24 REMARK 500 13 ARG A 967 14.44 53.52 REMARK 500 14 ALA A 950 -46.97 70.69 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25404 RELATED DB: BMRB DBREF 2MXD A 948 1006 UNP Q9QEJ5 POLG_PESV 948 1006 SEQADV 2MXD GLY A 945 UNP Q9QEJ5 EXPRESSION TAG SEQADV 2MXD ALA A 946 UNP Q9QEJ5 EXPRESSION TAG SEQADV 2MXD MET A 947 UNP Q9QEJ5 EXPRESSION TAG SEQRES 1 A 62 GLY ALA MET ALA ILE ALA LEU ARG ASP ASP GLU TYR ASP SEQRES 2 A 62 GLU TRP GLN ASP ILE ILE ARG ASP TRP ARG LYS GLU MET SEQRES 3 A 62 THR VAL GLN GLN PHE LEU ASP LEU LYS GLU ARG ALA LEU SEQRES 4 A 62 SER GLY ALA SER ASP PRO ASP SER GLN ARG TYR ASN ALA SEQRES 5 A 62 TRP LEU GLU LEU ARG ALA LYS ARG LEU SER HELIX 1 1 ARG A 952 ARG A 967 1 16 HELIX 2 2 THR A 971 SER A 984 1 14 HELIX 3 3 ASP A 988 ARG A 1004 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1