HEADER SPLICING 14-JAN-15 2MXT TITLE NMR STRUCTURE OF THE ACIDIC DOMAIN OF SYNCRIP (HNRNPQ) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACIDIC DOMAIN (UNP RESIDUES 24-107); COMPND 5 SYNONYM: HNRNP Q, GLYCINE- AND TYROSINE-RICH RNA-BINDING PROTEIN, COMPND 6 GRY-RBP, NS1-ASSOCIATED PROTEIN 1, SYNAPTOTAGMIN-BINDING, CYTOPLASMIC COMPND 7 RNA-INTERACTING PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYNCRIP, HNRPQ, NSAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, ACIDIC DOMAIN, SYNCRIP, SPLICING KEYWDS 2 FACTOR, SPLICING, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PARTNERSHIP FOR T-CELL BIOLOGY, TCELL EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR P.SERRANO,K.WUTHRICH,C.BEUCK,JOINT CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (JCSG),PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) REVDAT 3 14-JUN-23 2MXT 1 REMARK SEQADV REVDAT 2 10-JUN-15 2MXT 1 REMARK REVDAT 1 21-JAN-15 2MXT 0 JRNL AUTH P.SERRANO,C.BEUCK,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE ACIDIC DOMAIN OF SYNCRIP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104178. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 29 -75.03 -94.48 REMARK 500 1 GLU A 45 34.60 -76.84 REMARK 500 1 ASP A 60 46.49 -76.96 REMARK 500 1 LEU A 63 30.20 -95.59 REMARK 500 1 HIS A 65 39.22 -80.19 REMARK 500 1 GLN A 67 -70.52 -142.68 REMARK 500 1 ASN A 68 75.80 -56.99 REMARK 500 1 GLN A 82 69.37 -101.03 REMARK 500 2 GLU A 45 38.45 -77.12 REMARK 500 3 LEU A 29 -74.59 -82.09 REMARK 500 3 ALA A 31 26.89 -73.17 REMARK 500 3 HIS A 32 -21.24 55.46 REMARK 500 4 LEU A 29 -81.94 -71.36 REMARK 500 4 ASP A 60 49.01 -74.99 REMARK 500 4 LEU A 63 46.33 -76.76 REMARK 500 4 GLU A 84 49.87 -90.63 REMARK 500 5 SER A 2 -165.37 -127.16 REMARK 500 6 ALA A 11 15.81 -68.16 REMARK 500 6 GLU A 48 -70.86 -52.14 REMARK 500 6 ARG A 83 24.69 -140.29 REMARK 500 7 ASP A 60 33.81 -76.55 REMARK 500 7 ARG A 83 64.33 -119.99 REMARK 500 7 GLU A 84 -164.38 -115.17 REMARK 500 8 HIS A 65 31.15 -88.05 REMARK 500 9 GLU A 48 -70.87 -44.77 REMARK 500 9 ASP A 60 46.51 -79.46 REMARK 500 10 ALA A 11 30.29 -86.32 REMARK 500 10 ASP A 60 28.14 -72.75 REMARK 500 10 ASP A 62 79.49 -116.16 REMARK 500 10 HIS A 65 64.08 -106.44 REMARK 500 10 ASN A 68 71.88 -115.18 REMARK 500 11 SER A 2 -167.20 -107.65 REMARK 500 11 GLU A 45 11.99 -69.30 REMARK 500 11 ASN A 47 176.90 -57.18 REMARK 500 11 ASP A 60 48.23 -75.49 REMARK 500 11 ARG A 83 76.11 -105.24 REMARK 500 12 ALA A 27 36.42 -95.06 REMARK 500 12 GLU A 45 43.70 -85.42 REMARK 500 12 HIS A 65 10.26 59.39 REMARK 500 12 GLN A 67 -85.00 -54.17 REMARK 500 12 GLU A 84 30.59 -83.15 REMARK 500 13 GLU A 3 23.52 -74.04 REMARK 500 14 LEU A 29 -85.20 -77.59 REMARK 500 14 ASP A 60 45.22 -80.18 REMARK 500 15 SER A 2 -154.55 -140.83 REMARK 500 15 PRO A 14 -164.42 -62.01 REMARK 500 15 LEU A 29 -83.75 -79.70 REMARK 500 15 SER A 64 83.71 -61.94 REMARK 500 15 GLN A 82 69.44 -107.08 REMARK 500 16 GLN A 67 -85.68 -122.32 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 26 ALA A 27 9 -144.00 REMARK 500 SER A 61 ASP A 62 14 -146.94 REMARK 500 GLU A 84 LYS A 85 16 -146.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 38 0.11 SIDE CHAIN REMARK 500 2 ARG A 83 0.10 SIDE CHAIN REMARK 500 3 ARG A 83 0.10 SIDE CHAIN REMARK 500 6 ARG A 81 0.09 SIDE CHAIN REMARK 500 6 ARG A 83 0.09 SIDE CHAIN REMARK 500 7 TYR A 25 0.08 SIDE CHAIN REMARK 500 8 TYR A 25 0.10 SIDE CHAIN REMARK 500 11 ARG A 38 0.08 SIDE CHAIN REMARK 500 12 TYR A 25 0.06 SIDE CHAIN REMARK 500 13 TYR A 25 0.09 SIDE CHAIN REMARK 500 14 ARG A 38 0.14 SIDE CHAIN REMARK 500 15 TYR A 25 0.11 SIDE CHAIN REMARK 500 16 ARG A 38 0.10 SIDE CHAIN REMARK 500 16 ARG A 81 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25428 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-430710 RELATED DB: TARGETTRACK DBREF 2MXT A 2 85 UNP O60506 HNRPQ_HUMAN 24 107 SEQADV 2MXT GLY A 1 UNP O60506 EXPRESSION TAG SEQRES 1 A 85 GLY SER GLU ASN PHE GLN THR LEU LEU ASP ALA GLY LEU SEQRES 2 A 85 PRO GLN LYS VAL ALA GLU LYS LEU ASP GLU ILE TYR VAL SEQRES 3 A 85 ALA GLY LEU VAL ALA HIS SER ASP LEU ASP GLU ARG ALA SEQRES 4 A 85 ILE GLU ALA LEU LYS GLU PHE ASN GLU ASP GLY ALA LEU SEQRES 5 A 85 ALA VAL LEU GLN GLN PHE LYS ASP SER ASP LEU SER HIS SEQRES 6 A 85 VAL GLN ASN LYS SER ALA PHE LEU CYS GLY VAL MET LYS SEQRES 7 A 85 THR TYR ARG GLN ARG GLU LYS HELIX 1 1 SER A 2 ALA A 11 1 10 HELIX 2 2 PRO A 14 ALA A 27 1 14 HELIX 3 3 ASP A 36 GLU A 45 1 10 HELIX 4 4 ASN A 47 ASP A 60 1 14 HELIX 5 5 ASN A 68 GLN A 82 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1