HEADER SPLICING 19-JAN-15 2MY3 TITLE SNU17P-PML1P STRUCTURE INTERMEDIATE DURING RES COMPLEX ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: U2 SNRNP COMPONENT IST3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES(25-138); COMPND 5 SYNONYM: INCREASED SODIUM TOLERANCE PROTEIN 3, U2 SNRNP PROTEIN COMPND 6 SNU17; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PRE-MRNA LEAKAGE PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES(22-42); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: IST3, SNU17, YIB5W, YIR005W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM-11; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: L1591, PML1, YLR016C; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-28B WITH TEV CLEAVAGE SITE KEYWDS SPLICEOSOME, SNU17P, IST3P, PML1P, HETERODIMER, COOPERATIVITY, RES, KEYWDS 2 SPLICING, RRM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.WYSOCZANSKI,S.BECKER,M.ZWECKSTETTER REVDAT 2 14-JUN-23 2MY3 1 REMARK SEQADV REVDAT 1 12-AUG-15 2MY3 0 JRNL AUTH P.WYSOCZANSKI,S.BECKER,M.ZWECKSTETTER JRNL TITL STRUCTURES OF INTERMEDIATES DURING RES COMPLEX ASSEMBLY. JRNL REF SCI REP V. 5 12545 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26212312 JRNL DOI 10.1038/SREP12545 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104188. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM SODIUM PHOSPHATE, 250 MM REMARK 210 SODIUM CHLORIDE, 0.8-1 MM [U-13C; REMARK 210 U-15N] SNU17P, 1.2-1.5 MM PML1P_ REMARK 210 FMOC, 1 MM SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O; 25 MM SODIUM PHOSPHATE, REMARK 210 250 MM SODIUM CHLORIDE, 1-1.2 MM REMARK 210 SNU17P, 0.8-1 MM [U-13C; U-15N] REMARK 210 PML1P, 1 MM SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; HBCBCGCDHD REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.34, NMRPIPE, REMARK 210 ANALYSIS_CCPN, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 10 21.11 -76.71 REMARK 500 1 ASP A 61 109.96 175.27 REMARK 500 1 ASN A 115 103.23 67.62 REMARK 500 1 GLU A 117 -154.32 45.37 REMARK 500 2 ASN A 17 101.33 -39.69 REMARK 500 2 VAL A 38 -167.40 -124.44 REMARK 500 2 GLU A 60 179.30 -51.69 REMARK 500 2 ASP A 61 -174.82 -61.42 REMARK 500 2 ALA A 116 -68.33 68.66 REMARK 500 3 LEU A 18 -168.40 -100.57 REMARK 500 3 VAL A 38 -166.59 -124.78 REMARK 500 3 ASN A 47 -70.51 -71.43 REMARK 500 3 ASP A 61 101.31 177.22 REMARK 500 3 VAL A 111 -60.17 74.52 REMARK 500 3 SER A 112 -60.76 -162.67 REMARK 500 3 LYS A 113 111.95 66.78 REMARK 500 3 ASN A 115 -156.61 -155.39 REMARK 500 3 GLN B 204 -62.81 -99.87 REMARK 500 3 GLU B 221 86.82 62.52 REMARK 500 4 TYR A 7 71.66 -102.02 REMARK 500 4 ALA A 11 98.92 -69.69 REMARK 500 4 PRO A 37 47.99 -103.22 REMARK 500 4 VAL A 38 -166.65 -104.56 REMARK 500 4 ASN A 47 -65.10 -102.60 REMARK 500 4 ASP A 61 126.78 177.07 REMARK 500 4 PRO A 91 104.32 -57.91 REMARK 500 4 SER A 112 80.30 68.78 REMARK 500 4 LYS A 113 78.48 -114.35 REMARK 500 4 ASN A 115 16.36 59.94 REMARK 500 4 ALA A 116 -77.73 -102.97 REMARK 500 4 GLU A 117 98.76 60.25 REMARK 500 4 SER B 201 -62.81 -93.83 REMARK 500 4 PRO B 214 98.55 -60.31 REMARK 500 5 ALA A 2 83.86 59.19 REMARK 500 5 MET A 3 -60.07 -97.59 REMARK 500 5 TYR A 7 -55.38 69.93 REMARK 500 5 VAL A 38 -166.11 -117.76 REMARK 500 5 ASP A 61 108.95 176.46 REMARK 500 5 VAL A 111 -45.54 70.63 REMARK 500 5 ASN A 114 -176.95 61.02 REMARK 500 5 GLU A 117 -158.41 59.77 REMARK 500 5 SER B 201 155.09 73.06 REMARK 500 6 VAL A 38 -167.54 -103.06 REMARK 500 6 ASP A 61 137.26 176.04 REMARK 500 6 VAL A 111 -65.05 69.50 REMARK 500 6 SER A 112 -36.19 -178.70 REMARK 500 6 LYS A 113 97.39 62.47 REMARK 500 6 ASN A 114 164.50 75.98 REMARK 500 6 SER B 201 102.29 68.36 REMARK 500 6 GLU B 221 132.22 71.81 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19766 RELATED DB: BMRB REMARK 900 RELATED ID: 2MKC RELATED DB: PDB REMARK 900 RELATED ID: 25443 RELATED DB: BMRB REMARK 900 RELATED ID: 2MY2 RELATED DB: PDB DBREF 2MY3 A 5 118 UNP P40565 IST3_YEAST 25 138 DBREF 2MY3 B 202 222 UNP Q07930 PML1_YEAST 22 42 SEQADV 2MY3 GLY A 1 UNP P40565 EXPRESSION TAG SEQADV 2MY3 ALA A 2 UNP P40565 EXPRESSION TAG SEQADV 2MY3 MET A 3 UNP P40565 EXPRESSION TAG SEQADV 2MY3 GLY A 4 UNP P40565 EXPRESSION TAG SEQADV 2MY3 GLY B 200 UNP Q07930 EXPRESSION TAG SEQADV 2MY3 SER B 201 UNP Q07930 EXPRESSION TAG SEQRES 1 A 118 GLY ALA MET GLY ASN GLU TYR LYS ASP ASN ALA TYR ILE SEQRES 2 A 118 TYR ILE GLY ASN LEU ASN ARG GLU LEU THR GLU GLY ASP SEQRES 3 A 118 ILE LEU THR VAL PHE SER GLU TYR GLY VAL PRO VAL ASP SEQRES 4 A 118 VAL ILE LEU SER ARG ASP GLU ASN THR GLY GLU SER GLN SEQRES 5 A 118 GLY PHE ALA TYR LEU LYS TYR GLU ASP GLN ARG SER THR SEQRES 6 A 118 ILE LEU ALA VAL ASP ASN LEU ASN GLY PHE LYS ILE GLY SEQRES 7 A 118 GLY ARG ALA LEU LYS ILE ASP HIS THR PHE TYR ARG PRO SEQRES 8 A 118 LYS ARG SER LEU GLN LYS TYR TYR GLU ALA VAL LYS GLU SEQRES 9 A 118 GLU LEU ASP ARG ASP ILE VAL SER LYS ASN ASN ALA GLU SEQRES 10 A 118 LYS SEQRES 1 B 23 GLY SER LYS SER GLN TYR ILE ASP ILE MET PRO ASP PHE SEQRES 2 B 23 SER PRO SER GLY LEU LEU GLU LEU GLU SER HELIX 1 1 THR A 23 SER A 32 1 10 HELIX 2 2 ASP A 61 ASN A 73 1 13 HELIX 3 3 LYS A 92 SER A 94 5 3 HELIX 4 4 LEU A 95 VAL A 111 1 17 HELIX 5 5 LEU B 218 SER B 222 5 5 SHEET 1 A 4 ASP A 39 ARG A 44 0 SHEET 2 A 4 SER A 51 LYS A 58 -1 O PHE A 54 N SER A 43 SHEET 3 A 4 ALA A 11 ILE A 15 -1 N ILE A 15 O ALA A 55 SHEET 4 A 4 ILE A 84 PHE A 88 -1 O THR A 87 N TYR A 12 SHEET 1 B 2 LYS A 76 ILE A 77 0 SHEET 2 B 2 ARG A 80 ALA A 81 -1 O ARG A 80 N ILE A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1