HEADER RNA BINDING PROTEIN 22-JAN-15 2MYF TITLE SOLUTION STRUCTURE OF RNA RECOGNITION MOTIF OF A CYCLOPHILIN33-LIKE TITLE 2 PROTEIN FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRM CONTAINING CYCLOPHILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF (UNP RESIDUES 1-86); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF13_0122; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PFCYP33, RNA RECOGNITION MOTIF, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GANGULY,N.S.BHAVESH REVDAT 2 14-JUN-23 2MYF 1 REMARK SEQADV REVDAT 1 27-JAN-16 2MYF 0 JRNL AUTH A.K.GANGULY,N.S.BHAVESH JRNL TITL SOLUTION STRUCTURE OF RNA RECOGNITION MOTIF OF A JRNL TITL 2 CYCLOPHILIN33-LIKE PROTEIN FROM PLASMODIUM FALCIPARUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 2MYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104195. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-100% 13C; U-100% REMARK 210 15N] RRM, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 50 UM REMARK 210 DSS, 90% H2O/10% D2O; 0.5-1 MM REMARK 210 [U-100% 13C; U-100% 15N] RRM, 20 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 50 UM DSS, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA 3.0 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TYR A 56 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 TYR A 25 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 15 TYR A 25 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -1 -59.91 -131.30 REMARK 500 1 ALA A 6 96.19 -55.95 REMARK 500 1 ASP A 8 13.30 51.20 REMARK 500 2 HIS A 0 -82.24 -148.74 REMARK 500 2 ASP A 3 -77.48 -177.50 REMARK 500 2 ALA A 6 117.03 69.73 REMARK 500 2 ASP A 8 10.41 53.08 REMARK 500 2 ASN A 36 132.04 -173.67 REMARK 500 3 ALA A 6 95.65 -56.89 REMARK 500 3 ASP A 8 12.76 54.47 REMARK 500 4 SER A -1 35.68 -146.99 REMARK 500 4 HIS A 0 87.84 -168.70 REMARK 500 4 SER A 2 -101.64 -85.87 REMARK 500 4 ASP A 3 -22.10 -154.02 REMARK 500 4 ALA A 6 104.32 64.55 REMARK 500 4 ASP A 8 13.55 48.86 REMARK 500 4 ASN A 36 134.99 -171.84 REMARK 500 4 LYS A 46 81.17 40.53 REMARK 500 4 SER A 84 -164.39 -115.88 REMARK 500 5 ALA A 6 106.40 69.96 REMARK 500 5 ASP A 8 12.79 51.21 REMARK 500 5 LYS A 46 79.98 54.52 REMARK 500 6 HIS A 0 -89.05 64.74 REMARK 500 6 SER A 2 111.62 -161.33 REMARK 500 6 ALA A 6 101.12 68.17 REMARK 500 6 ASP A 8 12.58 52.79 REMARK 500 6 LYS A 46 87.33 53.61 REMARK 500 7 HIS A 0 95.76 70.97 REMARK 500 7 MET A 1 -135.83 -115.52 REMARK 500 7 SER A 2 75.15 -111.05 REMARK 500 7 ASP A 3 126.52 177.28 REMARK 500 7 ALA A 6 99.97 -68.66 REMARK 500 7 ASP A 8 11.98 53.04 REMARK 500 7 LYS A 46 76.64 62.40 REMARK 500 8 HIS A 0 99.48 68.72 REMARK 500 8 ALA A 6 102.70 -56.73 REMARK 500 8 ASP A 8 11.89 47.27 REMARK 500 8 ASN A 36 141.73 -178.34 REMARK 500 9 HIS A 0 106.80 71.25 REMARK 500 9 ALA A 6 109.80 63.09 REMARK 500 9 ASP A 8 9.34 48.47 REMARK 500 9 ASN A 36 148.37 179.99 REMARK 500 9 LYS A 46 63.50 62.75 REMARK 500 10 HIS A 0 88.83 70.93 REMARK 500 10 SER A 2 127.43 85.07 REMARK 500 10 ASN A 4 -166.56 58.09 REMARK 500 10 ALA A 6 86.82 -68.80 REMARK 500 10 ASP A 8 12.60 52.73 REMARK 500 11 SER A -1 -61.98 -160.47 REMARK 500 11 ASN A 4 -166.36 46.33 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 16 GLU A 17 9 -148.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25449 RELATED DB: BMRB DBREF 2MYF A 1 86 UNP C0H5C7 C0H5C7_PLAF7 1 86 SEQADV 2MYF GLY A -2 UNP C0H5C7 EXPRESSION TAG SEQADV 2MYF SER A -1 UNP C0H5C7 EXPRESSION TAG SEQADV 2MYF HIS A 0 UNP C0H5C7 EXPRESSION TAG SEQRES 1 A 89 GLY SER HIS MET SER ASP ASN ASN ALA THR ASP ILE LEU SEQRES 2 A 89 PHE VAL GLY GLY ILE ASP GLU THR ILE ASP GLU LYS SER SEQRES 3 A 89 LEU TYR ASP ILE PHE SER SER PHE GLY ASP ILE ARG ASN SEQRES 4 A 89 ILE GLU VAL PRO LEU ASN MET THR THR LYS LYS ASN ARG SEQRES 5 A 89 GLY PHE ALA PHE VAL GLU TYR VAL GLU VAL ASP ASP ALA SEQRES 6 A 89 LYS HIS ALA LEU TYR ASN MET ASN ASN PHE GLU LEU ASN SEQRES 7 A 89 GLY LYS ARG ILE HIS VAL ASN TYR SER LYS THR HELIX 1 1 ASP A 20 SER A 29 1 10 HELIX 2 2 GLU A 58 MET A 69 1 12 SHEET 1 A 4 ILE A 34 GLU A 38 0 SHEET 2 A 4 PHE A 53 TYR A 56 -1 O GLU A 55 N ARG A 35 SHEET 3 A 4 LEU A 10 GLY A 13 -1 N LEU A 10 O VAL A 54 SHEET 4 A 4 HIS A 80 ASN A 82 -1 O ASN A 82 N PHE A 11 SHEET 1 B 2 GLU A 73 LEU A 74 0 SHEET 2 B 2 LYS A 77 ARG A 78 -1 O LYS A 77 N LEU A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1