HEADER OXIDOREDUCTASE 30-JAN-15 2MYP TITLE AN ARSENATE REDUCTASE IN THE PHOSPHATE BINDING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN ARSENATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE, PROTEIN COMPND 5 ARSC, SYNARSC, RSYNARSC; COMPND 6 EC: 1.20.4.1, 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: ARSC, SLR0946; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS ALPHA/BETA/ALPHA SANDWICH FOLD, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.JIN,C.YU,C.HU,Y.HU REVDAT 2 23-SEP-15 2MYP 1 JRNL REVDAT 1 05-AUG-15 2MYP 0 JRNL AUTH C.HU,C.YU,Y.LIU,X.HOU,X.LIU,Y.HU,C.JIN JRNL TITL A HYBRID MECHANISM FOR THE SYNECHOCYSTIS ARSENATE REDUCTASE JRNL TITL 2 REVEALED BY STRUCTURAL SNAPSHOTS DURING ARSENATE REDUCTION. JRNL REF J.BIOL.CHEM. V. 290 22262 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26224634 JRNL DOI 10.1074/JBC.M115.659896 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-15. REMARK 100 THE RCSB ID CODE IS RCSB104204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] PROTEIN, 0.01 % REMARK 210 DSS, 0.01 % SODIUM AZIDE, 50 MM REMARK 210 SODIUM CHLORIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 40 MM DTT, 90% H2O/10% REMARK 210 D2O; 1 MM [U-13C; U-15N] PROTEIN, REMARK 210 0.01 % DSS, 0.01 % SODIUM AZIDE, REMARK 210 50 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 40 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D CCH-TOCSY; 3D REMARK 210 CCH-COSY; 3D HCCH-COSY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, NMRVIEW, SANE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 11 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 14 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 15 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 20 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 20 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 14 -77.11 57.13 REMARK 500 1 SER A 40 -99.47 -136.52 REMARK 500 1 CYS A 82 -177.90 60.11 REMARK 500 1 PRO A 88 -156.46 -76.47 REMARK 500 1 TRP A 90 6.23 -66.24 REMARK 500 1 GLN A 93 175.38 -59.75 REMARK 500 1 GLN A 107 -113.10 -91.56 REMARK 500 2 ARG A 14 -83.01 57.45 REMARK 500 2 SER A 40 -72.85 -130.18 REMARK 500 2 PRO A 88 -160.63 -76.59 REMARK 500 2 GLU A 89 -8.07 -58.45 REMARK 500 2 GLN A 107 -110.66 -90.48 REMARK 500 3 ARG A 14 -71.58 58.47 REMARK 500 3 ALA A 27 109.98 -49.01 REMARK 500 3 SER A 40 -104.56 -143.09 REMARK 500 3 CYS A 82 -179.45 59.45 REMARK 500 3 PRO A 88 -158.66 -77.07 REMARK 500 3 GLN A 107 -97.26 -89.06 REMARK 500 4 CYS A 13 -156.12 -138.28 REMARK 500 4 ARG A 14 -86.46 45.17 REMARK 500 4 SER A 40 -81.29 -140.46 REMARK 500 4 ASN A 85 -3.29 -141.29 REMARK 500 4 PRO A 88 -159.76 -76.01 REMARK 500 4 GLU A 89 -7.73 -59.04 REMARK 500 4 ASP A 105 107.92 -59.80 REMARK 500 4 GLN A 107 -105.74 -91.93 REMARK 500 5 ARG A 14 -76.41 56.29 REMARK 500 5 SER A 40 -125.23 -99.71 REMARK 500 5 PRO A 88 -156.87 -76.51 REMARK 500 5 GLU A 89 -3.70 -55.39 REMARK 500 5 GLN A 93 174.06 -59.44 REMARK 500 5 ASP A 105 100.77 -56.61 REMARK 500 5 GLN A 107 -103.56 -90.05 REMARK 500 6 CYS A 13 -74.93 -135.03 REMARK 500 6 SER A 40 -101.47 -128.53 REMARK 500 6 PRO A 88 -160.84 -76.67 REMARK 500 6 GLU A 89 -8.07 -58.97 REMARK 500 6 ASP A 105 106.99 -55.11 REMARK 500 6 GLN A 107 -99.93 -90.09 REMARK 500 7 ARG A 14 -75.88 59.65 REMARK 500 7 SER A 40 -89.15 -117.35 REMARK 500 7 PRO A 88 -160.58 -76.37 REMARK 500 7 GLU A 89 -8.00 -59.22 REMARK 500 7 ASP A 105 107.53 -54.76 REMARK 500 7 GLN A 107 -99.77 -93.17 REMARK 500 8 CYS A 13 -153.08 -137.10 REMARK 500 8 ARG A 14 -88.96 48.49 REMARK 500 8 SER A 40 -96.13 -130.39 REMARK 500 8 CYS A 82 174.35 60.03 REMARK 500 8 PRO A 88 -158.89 -76.58 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 16 ARG A 10 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 2 ASN A 11 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17074 RELATED DB: BMRB REMARK 900 RELATED ID: 2MYN RELATED DB: PDB REMARK 900 RELATED ID: 2MYT RELATED DB: PDB REMARK 900 RELATED ID: 2MYU RELATED DB: PDB DBREF 2MYP A 1 131 UNP P74313 ARSC_SYNY3 1 131 SEQADV 2MYP GLY A -2 UNP P74313 EXPRESSION TAG SEQADV 2MYP SER A -1 UNP P74313 EXPRESSION TAG SEQADV 2MYP HIS A 0 UNP P74313 EXPRESSION TAG SEQRES 1 A 134 GLY SER HIS MET LYS LYS VAL MET PHE VAL CYS LYS ARG SEQRES 2 A 134 ASN SER CYS ARG SER GLN MET ALA GLU GLY PHE ALA LYS SEQRES 3 A 134 THR LEU GLY ALA GLY LYS ILE ALA VAL THR SER CYS GLY SEQRES 4 A 134 LEU GLU SER SER ARG VAL HIS PRO THR ALA ILE ALA MET SEQRES 5 A 134 MET GLU GLU VAL GLY ILE ASP ILE SER GLY GLN THR SER SEQRES 6 A 134 ASP PRO ILE GLU ASN PHE ASN ALA ASP ASP TYR ASP VAL SEQRES 7 A 134 VAL ILE SER LEU CYS GLY CYS GLY VAL ASN LEU PRO PRO SEQRES 8 A 134 GLU TRP VAL THR GLN GLU ILE PHE GLU ASP TRP GLN LEU SEQRES 9 A 134 GLU ASP PRO ASP GLY GLN SER LEU GLU VAL PHE ARG THR SEQRES 10 A 134 VAL ARG GLY GLN VAL LYS GLU ARG VAL GLU ASN LEU ILE SEQRES 11 A 134 ALA LYS ILE SER HELIX 1 1 ARG A 14 GLY A 26 1 13 HELIX 2 2 HIS A 43 GLU A 52 1 10 HELIX 3 3 PRO A 64 PHE A 68 5 5 HELIX 4 4 PRO A 88 THR A 92 5 5 HELIX 5 5 SER A 108 SER A 131 1 24 SHEET 1 A 4 ILE A 30 GLY A 36 0 SHEET 2 A 4 LYS A 2 CYS A 8 1 N PHE A 6 O CYS A 35 SHEET 3 A 4 VAL A 75 SER A 78 1 O ILE A 77 N VAL A 7 SHEET 4 A 4 ILE A 95 ASP A 98 1 O GLU A 97 N SER A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1