HEADER UBIQUITIN-BINDING PROTEIN 02-FEB-15 2MYX TITLE STRUCTURE OF THE CUE DOMAIN OF YEAST CUE1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COUPLING OF UBIQUITIN CONJUGATION TO ER DEGRADATION PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 45-115 OF CUE1; COMPND 6 SYNONYM: KINETOCHORE-DEFECT SUPPRESSOR 4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: CUE1, KIS4, YM8156.06, YMR264W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: T7 EXPRESS (NEB); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET39(B)+ KEYWDS CUE DOMAIN, UBIQUITINATION, ERAD, UBIQUITIN-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.KNISS,V.V.ROGOV,F.LOEHR,P.GUENTERT,V.DOETSCH REVDAT 4 14-JUN-23 2MYX 1 REMARK SEQADV REVDAT 3 13-JUL-16 2MYX 1 JRNL REVDAT 2 22-JUN-16 2MYX 1 JRNL REVDAT 1 23-MAR-16 2MYX 0 JRNL AUTH M.VON DELBRUCK,A.KNISS,V.V.ROGOV,L.PLUSKA,K.BAGOLA,F.LOHR, JRNL AUTH 2 P.GUNTERT,T.SOMMER,V.DOTSCH JRNL TITL THE CUE DOMAIN OF CUE1 ALIGNS GROWING UBIQUITIN CHAINS WITH JRNL TITL 2 UBC7 FOR RAPID ELONGATION. JRNL REF MOL.CELL V. 62 918 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27264873 JRNL DOI 10.1016/J.MOLCEL.2016.04.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.96, OPALP REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000104210. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 5 % D2O, 0.01 % REMARK 210 SODIUM AZIDE, 4.6 MM PROTEASE REMARK 210 INHIBITOR COCKTAIL, 1.2 MM [U-98% REMARK 210 13C; U-98% 15N] CUE DOMAIN OF REMARK 210 CUE1, 100 UM DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HNCO; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D LONG RANGE 1H-15N REMARK 210 TROSY HNCO; 3D HN(CA)CO; 2D 1H- REMARK 210 13C HSQC; 2D 1H-13C CT TROSY H(C) REMARK 210 N; 2D (H)CB(CG)CCH-TOCSY; 2D (HB) REMARK 210 CB(CGCD)HD; 3D H(CC)(CO)NH TOCSY; REMARK 210 3D (H)C(C)(CO)NH TOCSY; 2D 1H- REMARK 210 15N BEST TROSY H(N)N REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, SPARKY 3.115, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 10 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 13 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 46 73.53 26.91 REMARK 500 1 GLN A 50 29.34 -70.99 REMARK 500 1 ALA A 52 -178.73 -64.28 REMARK 500 2 ALA A 42 -12.85 64.85 REMARK 500 2 ASN A 51 99.46 -63.35 REMARK 500 2 ARG A 58 81.88 2.51 REMARK 500 3 MET A 43 -79.45 -74.37 REMARK 500 3 ASN A 51 -75.70 -75.84 REMARK 500 3 ASP A 106 -179.75 -69.45 REMARK 500 4 ASN A 51 -13.51 -146.28 REMARK 500 5 GLN A 50 22.63 -65.27 REMARK 500 5 ARG A 54 13.39 56.30 REMARK 500 5 ARG A 58 90.02 -69.63 REMARK 500 6 MET A 43 17.11 51.34 REMARK 500 6 GLN A 50 54.47 37.69 REMARK 500 6 LEU A 53 33.05 -141.78 REMARK 500 6 ASN A 60 37.11 -99.34 REMARK 500 7 ALA A 42 51.51 -69.69 REMARK 500 7 GLN A 46 38.62 -145.55 REMARK 500 7 THR A 49 -30.30 -156.72 REMARK 500 7 ARG A 55 99.52 -61.86 REMARK 500 7 ASP A 106 -171.72 -69.76 REMARK 500 8 LEU A 53 38.02 -148.37 REMARK 500 9 ALA A 52 72.04 -69.52 REMARK 500 10 ARG A 54 19.54 51.15 REMARK 500 10 ASP A 106 -178.46 -69.98 REMARK 500 11 SER A 48 21.16 -67.86 REMARK 500 11 THR A 49 170.84 157.91 REMARK 500 11 ARG A 54 151.76 -44.13 REMARK 500 11 ASP A 106 -178.22 -64.33 REMARK 500 12 MET A 43 -48.45 -152.77 REMARK 500 12 THR A 56 -92.22 -121.07 REMARK 500 12 ASN A 60 -13.99 53.97 REMARK 500 13 THR A 56 17.48 -141.63 REMARK 500 15 GLN A 50 77.76 -59.00 REMARK 500 16 VAL A 59 155.94 -46.35 REMARK 500 16 ASP A 106 -179.25 -68.34 REMARK 500 18 ALA A 52 -159.40 -120.42 REMARK 500 19 MET A 43 -89.96 -113.63 REMARK 500 19 THR A 56 -21.61 -142.03 REMARK 500 19 PRO A 78 0.23 -68.54 REMARK 500 20 ALA A 52 28.63 49.80 REMARK 500 20 ALA A 77 75.46 -115.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 101 0.10 SIDE CHAIN REMARK 500 3 ARG A 101 0.08 SIDE CHAIN REMARK 500 5 ARG A 101 0.10 SIDE CHAIN REMARK 500 6 ARG A 58 0.10 SIDE CHAIN REMARK 500 8 ARG A 101 0.09 SIDE CHAIN REMARK 500 11 ARG A 101 0.09 SIDE CHAIN REMARK 500 12 ARG A 86 0.08 SIDE CHAIN REMARK 500 14 ARG A 101 0.09 SIDE CHAIN REMARK 500 15 ARG A 101 0.08 SIDE CHAIN REMARK 500 17 ARG A 58 0.11 SIDE CHAIN REMARK 500 18 ARG A 55 0.09 SIDE CHAIN REMARK 500 19 ARG A 55 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25461 RELATED DB: BMRB DBREF 2MYX A 45 115 UNP P38428 CUE1_YEAST 45 115 SEQADV 2MYX GLY A 41 UNP P38428 EXPRESSION TAG SEQADV 2MYX ALA A 42 UNP P38428 EXPRESSION TAG SEQADV 2MYX MET A 43 UNP P38428 EXPRESSION TAG SEQADV 2MYX GLY A 44 UNP P38428 EXPRESSION TAG SEQRES 1 A 75 GLY ALA MET GLY PRO GLN GLY SER THR GLN ASN ALA LEU SEQRES 2 A 75 ARG ARG THR GLY ARG VAL ASN GLY GLY HIS PRO VAL THR SEQRES 3 A 75 THR GLN MET VAL GLU THR VAL GLN ASN LEU ALA PRO ASN SEQRES 4 A 75 LEU HIS PRO GLU GLN ILE ARG TYR SER LEU GLU ASN THR SEQRES 5 A 75 GLY SER VAL GLU GLU THR VAL GLU ARG TYR LEU ARG GLY SEQRES 6 A 75 ASP GLU PHE SER PHE PRO PRO GLY PHE GLU HELIX 1 1 THR A 66 ALA A 77 1 12 HELIX 2 2 HIS A 81 GLY A 93 1 13 HELIX 3 3 SER A 94 ARG A 104 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1