HEADER HYDROLASE 11-FEB-15 2MZE TITLE NMR SOLUTION STRUCTURE OF THE PRO FORM OF HUMAN MATRILYSIN (PROMMP-7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRILYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIN, MATRIX METALLOPROTEINASE-7, MMP-7, PUMP-1 PROTEASE, COMPND 5 UTERINE METALLOPROTEINASE; COMPND 6 EC: 3.4.24.23; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP7, MPSL1, PUMP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28-A KEYWDS ZYMOGEN, HYDROLASE, METALLOENZYME EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.H.PRIOR,Y.G.FULCHER,S.R.VAN DOREN REVDAT 2 14-JUN-23 2MZE 1 REMARK SEQADV LINK REVDAT 1 11-NOV-15 2MZE 0 JRNL AUTH S.H.PRIOR,Y.G.FULCHER,R.K.KOPPISETTI,A.JURKEVICH, JRNL AUTH 2 S.R.VAN DOREN JRNL TITL CHARGE-TRIGGERED MEMBRANE INSERTION OF MATRIX JRNL TITL 2 METALLOPROTEINASE-7, SUPPORTER OF INNATE IMMUNITY AND JRNL TITL 3 TUMORS. JRNL REF STRUCTURE V. 23 2099 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26439767 JRNL DOI 10.1016/J.STR.2015.08.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.1, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000104227. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 PROMMP-7(E195A), 20 MM IMIDAZOLE, REMARK 210 PH 6.6, 10 MM CACL2, 20 UM REMARK 210 ZNCL2, 10 MM BETA- REMARK 210 MERCAPTOETHANOL, 0.02 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.4 MM REMARK 210 [U-10% 13C; U-100% 15N] PROMMP- REMARK 210 7(E195A), 20 MM IMIDAZOLE, PH REMARK 210 6.6, 10 MM CACL2, 20 UM ZNCL2, REMARK 210 10 MM BETA-MERCAPTOETHANOL, 0.02 REMARK 210 % SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.4 MM [U-100% 15N, U-100% 13CH3 REMARK 210 (ILV)] PROMMP-7(E195A), 20 MM REMARK 210 IMIDAZOLE, PH 6.6, 10 MM CACL2, REMARK 210 20 UM ZNCL2, 10 MM BETA- REMARK 210 MERCAPTOETHANOL, 0.02 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CO)CA; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; (HB)CB(CGCD)HD; (HB) REMARK 210 CB(CGCD)HE; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, ANALYSIS 2.4, REMARK 210 TALOS, CYANA 2.1, PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 192 H LEU A 196 1.56 REMARK 500 H GLY A 68 O ALA A 157 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 0 73.60 -174.88 REMARK 500 1 PRO A 1 -171.34 -69.76 REMARK 500 1 GLN A 2 77.00 -153.13 REMARK 500 1 TYR A 23 -79.11 -120.75 REMARK 500 1 LYS A 30 100.33 -58.06 REMARK 500 1 ILE A 50 108.27 -50.64 REMARK 500 1 LEU A 54 78.54 -174.63 REMARK 500 1 ASN A 55 -31.22 178.80 REMARK 500 1 SER A 56 -99.81 -91.14 REMARK 500 1 ARG A 66 -82.50 -161.65 REMARK 500 1 GLU A 74 96.32 -179.74 REMARK 500 1 TYR A 75 84.99 -150.37 REMARK 500 1 SER A 76 179.20 57.26 REMARK 500 1 SER A 81 159.63 62.88 REMARK 500 1 PRO A 121 1.21 -69.74 REMARK 500 1 LEU A 122 -156.61 -62.63 REMARK 500 1 VAL A 128 -11.11 -144.34 REMARK 500 1 ALA A 139 166.89 174.45 REMARK 500 1 TYR A 147 132.57 64.89 REMARK 500 1 ASP A 150 -25.13 76.19 REMARK 500 1 ASN A 154 138.09 -34.53 REMARK 500 1 THR A 155 112.23 73.29 REMARK 500 1 PRO A 162 79.17 -69.79 REMARK 500 1 THR A 164 -171.10 63.31 REMARK 500 1 ASP A 173 97.80 -69.21 REMARK 500 1 ASP A 180 -72.59 -125.54 REMARK 500 1 SER A 183 58.17 35.61 REMARK 500 1 THR A 215 32.16 -90.16 REMARK 500 1 ASN A 218 -170.89 -179.12 REMARK 500 1 SER A 242 61.24 -165.78 REMARK 500 1 ASN A 243 100.35 61.61 REMARK 500 2 PRO A 1 -172.00 -69.73 REMARK 500 2 GLN A 2 72.29 -150.24 REMARK 500 2 LEU A 24 -169.39 56.97 REMARK 500 2 LYS A 30 170.09 -51.45 REMARK 500 2 ASN A 31 139.87 67.06 REMARK 500 2 ILE A 50 108.24 -52.67 REMARK 500 2 LEU A 54 83.87 -157.64 REMARK 500 2 ASN A 55 -31.90 -179.59 REMARK 500 2 SER A 56 -101.30 -80.12 REMARK 500 2 ARG A 66 -64.20 -149.76 REMARK 500 2 SER A 76 100.58 -179.62 REMARK 500 2 PHE A 78 153.39 -49.78 REMARK 500 2 SER A 81 104.42 63.06 REMARK 500 2 PRO A 82 -72.13 -69.69 REMARK 500 2 TRP A 84 109.87 -47.05 REMARK 500 2 PRO A 121 28.17 -69.69 REMARK 500 2 LEU A 122 -160.25 -76.83 REMARK 500 2 VAL A 128 -10.77 -145.82 REMARK 500 2 ALA A 139 167.42 177.01 REMARK 500 REMARK 500 THIS ENTRY HAS 629 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 O REMARK 620 2 GLY A 165 O 119.9 REMARK 620 3 GLY A 167 O 135.0 94.8 REMARK 620 4 ASP A 169 OD1 65.4 128.4 116.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 NE2 REMARK 620 2 ASP A 145 OD2 82.3 REMARK 620 3 HIS A 158 NE2 128.7 139.5 REMARK 620 4 HIS A 171 ND1 105.1 119.6 80.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 150 OD2 REMARK 620 2 GLY A 151 O 67.1 REMARK 620 3 GLY A 153 O 100.4 119.5 REMARK 620 4 ASN A 154 O 50.3 100.9 51.1 REMARK 620 5 THR A 155 O 83.0 149.9 68.1 59.5 REMARK 620 6 ASP A 173 OD2 92.3 81.5 158.4 134.8 96.6 REMARK 620 7 GLU A 176 OE2 159.5 128.3 61.1 109.7 81.6 102.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 194 NE2 REMARK 620 2 HIS A 198 NE2 97.3 REMARK 620 3 HIS A 204 NE2 96.7 122.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y6D RELATED DB: PDB REMARK 900 ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 1.6A REMARK 900 RELATED ID: 2Y6C RELATED DB: PDB REMARK 900 ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 1.7A REMARK 900 RELATED ID: 1MMP RELATED DB: PDB REMARK 900 ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 2.3A REMARK 900 RELATED ID: 1MMQ RELATED DB: PDB REMARK 900 ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 1.9A REMARK 900 RELATED ID: 1MMR RELATED DB: PDB REMARK 900 ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 2.4A REMARK 900 RELATED ID: 25485 RELATED DB: BMRB DBREF 2MZE A -2 247 UNP P09237 MMP7_HUMAN 18 267 SEQADV 2MZE ALA A 195 UNP P09237 GLU 215 ENGINEERED MUTATION SEQRES 1 A 250 LEU PRO LEU PRO GLN GLU ALA GLY GLY MET SER GLU LEU SEQRES 2 A 250 GLN TRP GLU GLN ALA GLN ASP TYR LEU LYS ARG PHE TYR SEQRES 3 A 250 LEU TYR ASP SER GLU THR LYS ASN ALA ASN SER LEU GLU SEQRES 4 A 250 ALA LYS LEU LYS GLU MET GLN LYS PHE PHE GLY LEU PRO SEQRES 5 A 250 ILE THR GLY MET LEU ASN SER ARG VAL ILE GLU ILE MET SEQRES 6 A 250 GLN LYS PRO ARG CYS GLY VAL PRO ASP VAL ALA GLU TYR SEQRES 7 A 250 SER LEU PHE PRO ASN SER PRO LYS TRP THR SER LYS VAL SEQRES 8 A 250 VAL THR TYR ARG ILE VAL SER TYR THR ARG ASP LEU PRO SEQRES 9 A 250 HIS ILE THR VAL ASP ARG LEU VAL SER LYS ALA LEU ASN SEQRES 10 A 250 MET TRP GLY LYS GLU ILE PRO LEU HIS PHE ARG LYS VAL SEQRES 11 A 250 VAL TRP GLY THR ALA ASP ILE MET ILE GLY PHE ALA ARG SEQRES 12 A 250 GLY ALA HIS GLY ASP SER TYR PRO PHE ASP GLY PRO GLY SEQRES 13 A 250 ASN THR LEU ALA HIS ALA PHE ALA PRO GLY THR GLY LEU SEQRES 14 A 250 GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU ARG TRP THR SEQRES 15 A 250 ASP GLY SER SER LEU GLY ILE ASN PHE LEU TYR ALA ALA SEQRES 16 A 250 THR HIS ALA LEU GLY HIS SER LEU GLY MET GLY HIS SER SEQRES 17 A 250 SER ASP PRO ASN ALA VAL MET TYR PRO THR TYR GLY ASN SEQRES 18 A 250 GLY ASP PRO GLN ASN PHE LYS LEU SER GLN ASP ASP ILE SEQRES 19 A 250 LYS GLY ILE GLN LYS LEU TYR GLY LYS ARG SER ASN SER SEQRES 20 A 250 ARG LYS LYS HET CA A 301 1 HET CA A 302 1 HET ZN A 303 1 HET ZN A 304 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 CA 2(CA 2+) FORMUL 4 ZN 2(ZN 2+) HELIX 1 1 GLU A 3 MET A 7 5 5 HELIX 2 2 SER A 8 PHE A 22 1 15 HELIX 3 3 ALA A 32 GLY A 47 1 16 HELIX 4 4 SER A 56 LYS A 64 1 9 HELIX 5 5 PRO A 101 GLU A 119 1 19 HELIX 6 6 PHE A 188 LEU A 200 1 13 HELIX 7 7 SER A 227 GLY A 239 1 13 SHEET 1 A 4 PHE A 124 ARG A 125 0 SHEET 2 A 4 VAL A 89 ILE A 93 1 N VAL A 89 O ARG A 125 SHEET 3 A 4 ILE A 134 ALA A 139 1 O ILE A 134 N THR A 90 SHEET 4 A 4 ALA A 170 ASP A 173 1 O ALA A 170 N MET A 135 SHEET 1 B 2 TRP A 178 THR A 179 0 SHEET 2 B 2 ILE A 186 ASN A 187 1 O ILE A 186 N THR A 179 LINK O ASP A 133 CA CA A 301 1555 1555 2.41 LINK NE2 HIS A 143 ZN ZN A 303 1555 1555 2.09 LINK OD2 ASP A 145 ZN ZN A 303 1555 1555 2.15 LINK OD2 ASP A 150 CA CA A 302 1555 1555 2.87 LINK O GLY A 151 CA CA A 302 1555 1555 2.16 LINK O GLY A 153 CA CA A 302 1555 1555 3.01 LINK O ASN A 154 CA CA A 302 1555 1555 3.07 LINK O THR A 155 CA CA A 302 1555 1555 2.44 LINK NE2 HIS A 158 ZN ZN A 303 1555 1555 2.17 LINK O GLY A 165 CA CA A 301 1555 1555 2.41 LINK O GLY A 167 CA CA A 301 1555 1555 2.42 LINK OD1 ASP A 169 CA CA A 301 1555 1555 2.39 LINK ND1 HIS A 171 ZN ZN A 303 1555 1555 2.41 LINK OD2 ASP A 173 CA CA A 302 1555 1555 2.56 LINK OE2 GLU A 176 CA CA A 302 1555 1555 2.42 LINK NE2 HIS A 194 ZN ZN A 304 1555 1555 2.08 LINK NE2 HIS A 198 ZN ZN A 304 1555 1555 2.10 LINK NE2 HIS A 204 ZN ZN A 304 1555 1555 2.09 SITE 1 AC1 5 ASP A 133 GLY A 165 LEU A 166 GLY A 167 SITE 2 AC1 5 ASP A 169 SITE 1 AC2 7 ASP A 150 GLY A 151 GLY A 153 ASN A 154 SITE 2 AC2 7 THR A 155 ASP A 173 GLU A 176 SITE 1 AC3 5 HIS A 143 ASP A 145 HIS A 158 PHE A 160 SITE 2 AC3 5 HIS A 171 SITE 1 AC4 4 CYS A 67 HIS A 194 HIS A 198 HIS A 204 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1