HEADER RNA BINDING PROTEIN 23-FEB-15 2MZS TITLE NMR STRUCTURE OF THE RRM2 DOMAIN OF HRB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HRB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND RRM DOMAIN (UNP RESIDUES 262-358); COMPND 5 SYNONYM: PROTEIN TOM34; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: HRB1, N2009, TOM34, YNL004W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RRM, RNA BINDING DOMAIN, HRB1, THO/TREX, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.MARTINEZ-LUMBRERAS,B.SERAPHIN,J.PEREZ-CANADILLAS REVDAT 4 14-JUN-23 2MZS 1 REMARK SEQADV REVDAT 3 27-JAN-16 2MZS 1 JRNL REVDAT 2 09-DEC-15 2MZS 1 JRNL REVDAT 1 02-DEC-15 2MZS 0 JRNL AUTH S.MARTINEZ-LUMBRERAS,V.TAVERNITI,S.ZORRILLA,B.SERAPHIN, JRNL AUTH 2 J.M.PEREZ-CANADILLAS JRNL TITL GBP2 INTERACTS WITH THO/TREX THROUGH A NOVEL TYPE OF RRM JRNL TITL 2 DOMAIN. JRNL REF NUCLEIC ACIDS RES. V. 44 437 2016 JRNL REFN ISSN 0305-1048 JRNL PMID 26602689 JRNL DOI 10.1093/NAR/GKV1303 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104241. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM PROTEIN, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 25 MM SODIUM CHLORIDE, REMARK 210 0.1 MM DTT, 90% H2O/10% D2O; REMARK 210 0.2 MM PROTEIN, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 25 MM SODIUM CHLORIDE, REMARK 210 0.1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TOPSPIN, CCPNMR ANALYSIS, REMARK 210 NMRPIPE REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 262 168.34 67.99 REMARK 500 1 LYS A 266 35.59 -140.15 REMARK 500 1 ASN A 267 -22.43 -160.58 REMARK 500 1 ALA A 288 -114.50 -109.31 REMARK 500 1 SER A 300 -177.11 66.76 REMARK 500 1 THR A 301 -35.46 -142.87 REMARK 500 1 GLU A 337 -144.89 61.68 REMARK 500 1 HIS A 340 2.32 -160.09 REMARK 500 1 HIS A 342 -179.25 61.86 REMARK 500 1 SER A 343 114.53 -163.23 REMARK 500 1 ASP A 349 45.88 -142.65 REMARK 500 2 SER A 261 154.73 76.38 REMARK 500 2 GLU A 262 170.92 68.68 REMARK 500 2 LYS A 266 24.99 -145.61 REMARK 500 2 ASN A 267 -22.54 -161.55 REMARK 500 2 VAL A 272 60.58 -113.60 REMARK 500 2 ALA A 288 -125.39 -91.80 REMARK 500 2 SER A 300 171.68 75.98 REMARK 500 2 VAL A 339 144.88 -170.82 REMARK 500 2 SER A 343 143.57 -171.43 REMARK 500 2 VAL A 348 135.42 -170.27 REMARK 500 2 ASP A 349 39.64 -156.44 REMARK 500 3 ASN A 267 -42.21 -174.36 REMARK 500 3 LEU A 268 116.97 -34.75 REMARK 500 3 VAL A 272 79.88 -108.28 REMARK 500 3 LYS A 282 0.15 -64.93 REMARK 500 3 ALA A 288 -104.75 -79.44 REMARK 500 3 THR A 301 -27.24 -146.09 REMARK 500 3 SER A 338 -169.86 -167.41 REMARK 500 3 SER A 343 155.80 77.89 REMARK 500 3 ASP A 349 115.10 -166.75 REMARK 500 4 ASN A 267 -25.64 -168.21 REMARK 500 4 ALA A 270 -5.78 -59.98 REMARK 500 4 ALA A 288 -96.01 -89.35 REMARK 500 4 SER A 300 163.65 73.54 REMARK 500 4 GLU A 327 18.96 59.49 REMARK 500 4 ASP A 353 8.31 -159.51 REMARK 500 4 ASP A 354 31.72 -85.92 REMARK 500 4 VAL A 357 115.20 74.49 REMARK 500 5 SER A 261 17.98 -143.26 REMARK 500 5 LYS A 266 78.37 -150.01 REMARK 500 5 ASN A 267 -34.83 -176.71 REMARK 500 5 ALA A 270 -7.42 -57.89 REMARK 500 5 ALA A 288 -108.72 -101.01 REMARK 500 5 VAL A 357 22.36 -149.14 REMARK 500 6 SER A 261 33.45 -153.29 REMARK 500 6 ASN A 267 -23.03 83.91 REMARK 500 6 LEU A 268 116.58 -28.91 REMARK 500 6 ALA A 288 -128.84 -83.52 REMARK 500 6 GLU A 337 -167.12 59.10 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 265 LYS A 266 2 -145.65 REMARK 500 SER A 307 PHE A 308 2 -149.27 REMARK 500 SER A 307 PHE A 308 3 -144.89 REMARK 500 ASN A 267 LEU A 268 6 144.56 REMARK 500 VAL A 265 LYS A 266 8 -148.75 REMARK 500 VAL A 265 LYS A 266 10 -148.69 REMARK 500 TYR A 309 ASP A 310 11 145.96 REMARK 500 SER A 307 PHE A 308 12 -141.31 REMARK 500 ASN A 267 LEU A 268 13 145.28 REMARK 500 VAL A 265 LYS A 266 20 -148.56 REMARK 500 LEU A 331 ASP A 332 20 148.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25498 RELATED DB: BMRB REMARK 900 RELATED ID: 2MZQ RELATED DB: PDB REMARK 900 RELATED ID: 2MZR RELATED DB: PDB REMARK 900 RELATED ID: 2MZT RELATED DB: PDB DBREF 2MZS A 262 358 UNP P38922 HRB1_YEAST 262 358 SEQADV 2MZS GLY A 260 UNP P38922 EXPRESSION TAG SEQADV 2MZS SER A 261 UNP P38922 EXPRESSION TAG SEQRES 1 A 99 GLY SER GLU VAL ILE VAL LYS ASN LEU PRO ALA SER VAL SEQRES 2 A 99 ASN TRP GLN ALA LEU LYS ASP ILE PHE LYS GLU CYS GLY SEQRES 3 A 99 ASN VAL ALA HIS ALA ASP VAL GLU LEU ASP GLY ASP GLY SEQRES 4 A 99 VAL SER THR GLY SER GLY THR VAL SER PHE TYR ASP ILE SEQRES 5 A 99 LYS ASP LEU HIS ARG ALA ILE GLU LYS TYR ASN GLY TYR SEQRES 6 A 99 SER ILE GLU GLY ASN VAL LEU ASP VAL LYS SER LYS GLU SEQRES 7 A 99 SER VAL HIS ASN HIS SER ASP GLY ASP ASP VAL ASP ILE SEQRES 8 A 99 PRO MET ASP ASP SER PRO VAL ASN HELIX 1 1 ASN A 273 GLU A 283 1 11 HELIX 2 2 ASP A 310 ASN A 322 1 13 SHEET 1 A 4 HIS A 289 ASP A 291 0 SHEET 2 A 4 GLY A 304 SER A 307 -1 O THR A 305 N ASP A 291 SHEET 3 A 4 VAL A 263 VAL A 265 -1 N VAL A 263 O VAL A 306 SHEET 4 A 4 VAL A 333 SER A 335 -1 O LYS A 334 N ILE A 264 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1