data_2N0J # _entry.id 2N0J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id RCSB104268 RCSB 2N0J PDB 25526 BMRB D_1000104268 WWPDB # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 16609 BMRB '1H, 13C, 15N, 31P chemical shift deposition' unspecified 25526 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N0J _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-03-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Duchardt-Ferner, E.' 1 'Gottstein-Schmidtke, S.R.' 2 'Weigand, J.E.' 3 'Ohlenschlaeger, O.E.' 4 'Wurm, J.' 5 'Hammann, C.' 6 'Suess, B.' 7 'Woehnert, J.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'What a Difference an OH Makes: Conformational Dynamics as the Basis for the Ligand Specificity of the Neomycin-Sensing Riboswitch.' Angew.Chem.Int.Ed.Engl. 55 1527 1530 2016 ? GE 1433-7851 9999 ? 26661511 10.1002/anie.201507365 1 'NMR resonance assignments of an engineered neomycin-sensing riboswitch RNA bound to ribostamycin and tobramycin.' 'Biomol.Nmr Assign.' 4 115 118 2010 ? NE 1874-2718 ? ? 20306311 10.1007/s12104-010-9223-z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Duchardt-Ferner, E.' 1 primary 'Gottstein-Schmidtke, S.R.' 2 primary 'Weigand, J.E.' 3 primary 'Ohlenschlager, O.' 4 primary 'Wurm, J.P.' 5 primary 'Hammann, C.' 6 primary 'Suess, B.' 7 primary 'Wohnert, J.' 8 1 'Schmidtke, S.R.' 9 1 'Duchardt-Ferner, E.' 10 1 'Weigand, J.E.' 11 1 'Suess, B.' 12 1 'Wohnert, J.' 13 # _cell.entry_id 2N0J _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2N0J _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA_(27-MER)' 8557.031 1 ? ? ? ? 2 non-polymer syn RIBOSTAMYCIN 454.473 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUGCUUGUCCUUUAAUGGUCCAGUC _entity_poly.pdbx_seq_one_letter_code_can GGCUGCUUGUCCUUUAAUGGUCCAGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 G n 1 6 C n 1 7 U n 1 8 U n 1 9 G n 1 10 U n 1 11 C n 1 12 C n 1 13 U n 1 14 U n 1 15 U n 1 16 A n 1 17 A n 1 18 U n 1 19 G n 1 20 G n 1 21 U n 1 22 C n 1 23 C n 1 24 A n 1 25 G n 1 26 U n 1 27 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N0J _struct_ref.pdbx_db_accession 2N0J _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N0J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2N0J _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 27 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 RIO non-polymer . RIBOSTAMYCIN ;5-AMINO-2-AMINOMETHYL-6-[4,6-DIAMINO-2-(3,4-DIHYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-2-YLOXY)-3-HYDROXY-CYCLOHEXYLOXY]-TETRAHYDRO-PYRAN-3,4-DIOL; (1R,2R,3S,4R,6S)-4,6-diamino-3-hydroxy-2-(beta-D-ribofuranosyloxy)cyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside ; 'C17 H34 N4 O10' 454.473 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 2 '2D 1H-15N HSQC' 2 3 2 '3D 1H-15N NOESY' 3 4 3 '2D 1H-13C HSQC' 2 5 5 '3D HNCO' 2 6 5 '3D H(CCO)NH' 3 7 3 '3D 1H-13C NOESY' 3 8 3 '3D 1H-13C NOESY' 3 9 4 '2D 1H-1H TOCSY' 3 10 4 '2D DQF-COSY' 3 11 4 '2D 1H-1H NOESY' 2 12 6 '2D 1H-1H TOCSY' 2 13 6 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.2 ? ? 267 K 2 ? 6.2 ? ? 283 K 3 ? 6.2 ? ? 298 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.8 mM RNA (27-MER), 25 mM potassium phosphate, 50 mM potassium chloride, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.8 mM [U-100% 15N] RNA (27-MER), 0.9 mM RIBOSTAMYCIN, 25 mM potassium phosphate, 50 mM potassium chloride, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '1.1 mM [U-100% 13C; U-100% 15N] RNA (27-MER), 1.2 mM RIBOSTAMYCIN, 25 mM potassium phosphate, 50 mM potassium chloride, 100% D2O' 3 '100% D2O' '1.1 mM [U-13C; U-15N; U-2H] RNA (27-MER), 1.2 mM RIBOSTAMYCIN, 25 mM potassium phosphate, 50 mM potassium chloride, 100% D2O' 4 '100% D2O' ;1.1 mM [U-100% 13C; U-100% 15N] RNA (27-MER), 1.2 mM RIBOSTAMYCIN, 25 mM potassium phosphate, 50 mM potassium chloride, 90% H2O/10% D2O ; 5 '90% H2O/10% D2O' '1.1 mM [U-13C; U-15N; U-2H] RNA (27-MER), 1.2 mM RIBOSTAMYCIN, 25 mM potassium phosphate, 50 mM potassium chloride, 90% H2O/10% D2O' 6 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker Avance 1 'Bruker Avance' 700 Bruker Avance 2 'Bruker Avance' 800 Bruker Avance 3 'Bruker Avance' 900 Bruker Avance 4 'Bruker Avance' 950 Bruker Avance 5 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2N0J _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N0J _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N0J _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TOPSPIN 2.1 1 'Bruker Biospin' processing TOPSPIN 2.1 2 Wuthrich 'chemical shift assignment' CARA 1.8.4.2 3 Wuthrich 'peak picking' CARA 1.8.4.2 4 Goddard 'chemical shift assignment' SPARKY ? 5 Goddard 'peak picking' SPARKY ? 6 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 7 ? refinement CYANA ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N0J _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N0J _struct.title 'Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostamycin complex' _struct.pdbx_descriptor 27-MER _struct.pdbx_model_details 'closest to the average, model5' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N0J _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Riboswitches, RNA-ligand interaction, Aminoglycosides, RNA recognition, RNA structure, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 1 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 1 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 1 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 26 O2 ? ? A G 2 A U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 26 N3 ? ? A G 2 A U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 3 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 3 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 3 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 4 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 4 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 5 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 5 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 5 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A U 10 N3 ? ? ? 1_555 A U 21 O4 ? ? A U 10 A U 21 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? hydrog18 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 11 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 11 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 11 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A U 13 N3 ? ? ? 1_555 A U 18 O4 ? ? A U 13 A U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog25 hydrog ? ? A U 13 O2 ? ? ? 1_555 A U 18 N3 ? ? A U 13 A U 18 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE RIO A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 U A 4 ? U A 4 . ? 1_555 ? 2 AC1 11 G A 5 ? G A 5 . ? 1_555 ? 3 AC1 11 G A 9 ? G A 9 . ? 1_555 ? 4 AC1 11 U A 10 ? U A 10 . ? 1_555 ? 5 AC1 11 C A 11 ? C A 11 . ? 1_555 ? 6 AC1 11 C A 12 ? C A 12 . ? 1_555 ? 7 AC1 11 A A 17 ? A A 17 . ? 1_555 ? 8 AC1 11 G A 19 ? G A 19 . ? 1_555 ? 9 AC1 11 G A 20 ? G A 20 . ? 1_555 ? 10 AC1 11 U A 21 ? U A 21 . ? 1_555 ? 11 AC1 11 C A 22 ? C A 22 . ? 1_555 ? # _atom_sites.entry_id 2N0J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 C 22 22 22 C C A . n A 1 23 C 23 23 23 C C A . n A 1 24 A 24 24 24 A A A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 C 27 27 27 C C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RIO _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id RIO _pdbx_nonpoly_scheme.auth_mon_id RIO _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'RNA (27-MER)-1' 0.8 ? mM ? 1 'potassium phosphate-2' 25 ? mM ? 1 'potassium chloride-3' 50 ? mM ? 1 'RNA (27-MER)-4' 0.8 ? mM '[U-100% 15N]' 2 RIBOSTAMYCIN-5 0.9 ? mM ? 2 'potassium phosphate-6' 25 ? mM ? 2 'potassium chloride-7' 50 ? mM ? 2 'RNA (27-MER)-8' 1.1 ? mM '[U-100% 13C; U-100% 15N]' 3 RIBOSTAMYCIN-9 1.2 ? mM ? 3 'potassium phosphate-10' 25 ? mM ? 3 'potassium chloride-11' 50 ? mM ? 3 'RNA (27-MER)-12' 1.1 ? mM '[U-13C; U-15N; U-2H]' 4 RIBOSTAMYCIN-13 1.2 ? mM ? 4 'potassium phosphate-14' 25 ? mM ? 4 'potassium chloride-15' 50 ? mM ? 4 'RNA (27-MER)-16' 1.1 ? mM '[U-100% 13C; U-100% 15N]' 5 RIBOSTAMYCIN-17 1.2 ? mM ? 5 'potassium phosphate-18' 25 ? mM ? 5 'potassium chloride-19' 50 ? mM ? 5 'RNA (27-MER)-20' 1.1 ? mM '[U-13C; U-15N; U-2H]' 6 RIBOSTAMYCIN-21 1.2 ? mM ? 6 'potassium phosphate-22' 25 ? mM ? 6 'potassium chloride-23' 50 ? mM ? 6 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N0J _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 50 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 879 _pdbx_nmr_constraints.NOE_interentity_total_count 103 _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 429 _pdbx_nmr_constraints.NOE_long_range_total_count 127 _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 220 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.16 108.50 4.66 0.70 N 2 1 "O4'" A C 6 ? ? "C1'" A C 6 ? ? "C2'" A C 6 ? ? 98.54 105.80 -7.26 1.00 N 3 1 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.56 108.50 5.06 0.70 N 4 1 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 122.98 118.90 4.08 0.60 N 5 1 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.39 121.90 -4.51 0.70 N 6 1 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 113.26 108.50 4.76 0.70 N 7 1 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.77 108.50 5.27 0.70 N 8 1 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.06 108.50 4.56 0.70 N 9 1 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 113.04 108.50 4.54 0.70 N 10 1 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 114.27 108.50 5.77 0.70 N 11 2 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 115.64 108.50 7.14 0.70 N 12 2 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 114.31 108.50 5.81 0.70 N 13 2 "O4'" A U 18 ? ? "C1'" A U 18 ? ? N1 A U 18 ? ? 113.15 108.50 4.65 0.70 N 14 2 "O4'" A U 26 ? ? "C1'" A U 26 ? ? N1 A U 26 ? ? 113.56 108.50 5.06 0.70 N 15 3 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.79 108.50 4.29 0.70 N 16 3 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 116.34 108.50 7.84 0.70 N 17 3 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.08 108.50 4.58 0.70 N 18 3 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.81 108.50 4.31 0.70 N 19 3 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 112.89 108.50 4.39 0.70 N 20 3 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 114.77 108.50 6.27 0.70 N 21 3 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.99 108.50 5.49 0.70 N 22 3 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 112.93 108.50 4.43 0.70 N 23 3 "O4'" A U 26 ? ? "C1'" A U 26 ? ? N1 A U 26 ? ? 112.79 108.50 4.29 0.70 N 24 4 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.00 108.50 4.50 0.70 N 25 4 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.76 108.50 4.26 0.70 N 26 4 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 112.98 108.50 4.48 0.70 N 27 4 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.44 108.50 4.94 0.70 N 28 4 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 114.20 108.50 5.70 0.70 N 29 4 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.76 108.50 4.26 0.70 N 30 4 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.39 108.50 4.89 0.70 N 31 4 N1 A C 23 ? ? C2 A C 23 ? ? O2 A C 23 ? ? 122.66 118.90 3.76 0.60 N 32 4 N3 A C 23 ? ? C2 A C 23 ? ? O2 A C 23 ? ? 117.70 121.90 -4.20 0.70 N 33 4 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.58 121.90 -4.32 0.70 N 34 5 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.16 108.50 4.66 0.70 N 35 5 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.43 108.50 4.93 0.70 N 36 5 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 114.38 108.50 5.88 0.70 N 37 5 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 122.71 118.90 3.81 0.60 N 38 5 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.44 121.90 -4.46 0.70 N 39 5 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 113.24 108.50 4.74 0.70 N 40 5 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.83 108.50 4.33 0.70 N 41 5 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.48 108.50 4.98 0.70 N 42 5 "O4'" A U 14 ? ? "C1'" A U 14 ? ? N1 A U 14 ? ? 112.70 108.50 4.20 0.70 N 43 5 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.29 108.50 4.79 0.70 N 44 5 "O4'" A G 20 ? ? "C1'" A G 20 ? ? N9 A G 20 ? ? 114.05 108.50 5.55 0.70 N 45 5 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 112.88 108.50 4.38 0.70 N 46 5 N1 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 122.63 118.90 3.73 0.60 N 47 5 N3 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 117.70 121.90 -4.20 0.70 N 48 6 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.11 108.50 4.61 0.70 N 49 6 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.78 118.90 4.88 0.60 N 50 6 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.76 121.90 -5.14 0.70 N 51 6 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.07 108.50 4.57 0.70 N 52 6 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.73 108.50 5.23 0.70 N 53 6 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 114.75 108.50 6.25 0.70 N 54 6 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.84 108.50 5.34 0.70 N 55 6 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 112.73 108.50 4.23 0.70 N 56 6 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 112.92 108.50 4.42 0.70 N 57 6 N1 A C 27 ? ? C2 A C 27 ? ? O2 A C 27 ? ? 122.83 118.90 3.93 0.60 N 58 7 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.91 108.50 4.41 0.70 N 59 7 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.31 108.50 4.81 0.70 N 60 7 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.83 108.50 4.33 0.70 N 61 7 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.39 108.50 6.89 0.70 N 62 7 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.49 108.50 4.99 0.70 N 63 7 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 112.78 108.50 4.28 0.70 N 64 7 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.80 108.50 5.30 0.70 N 65 8 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.74 108.50 4.24 0.70 N 66 8 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.78 108.50 4.28 0.70 N 67 8 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.02 118.90 4.12 0.60 N 68 8 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.07 121.90 -4.83 0.70 N 69 8 "C3'" A C 6 ? ? "O3'" A C 6 ? ? P A U 7 ? ? 127.43 119.70 7.73 1.20 Y 70 8 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 113.00 108.50 4.50 0.70 N 71 8 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 116.16 108.50 7.66 0.70 N 72 8 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.26 108.50 5.76 0.70 N 73 8 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 114.19 108.50 5.69 0.70 N 74 8 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.68 108.50 5.18 0.70 N 75 9 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.04 108.50 4.54 0.70 N 76 9 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.00 108.50 4.50 0.70 N 77 9 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.38 118.90 4.48 0.60 N 78 9 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.50 121.90 -4.40 0.70 N 79 9 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.05 108.50 4.55 0.70 N 80 9 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 112.82 108.50 4.32 0.70 N 81 9 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.82 108.50 5.32 0.70 N 82 9 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 113.59 108.50 5.09 0.70 N 83 10 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.79 108.50 5.29 0.70 N 84 10 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.43 118.90 4.53 0.60 N 85 10 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.50 121.90 -4.40 0.70 N 86 10 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 112.81 108.50 4.31 0.70 N 87 10 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.27 108.50 4.77 0.70 N 88 10 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.75 108.50 5.25 0.70 N 89 10 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.97 108.50 4.47 0.70 N 90 10 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 113.40 108.50 4.90 0.70 N 91 10 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 112.73 108.50 4.23 0.70 N 92 11 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.92 108.50 4.42 0.70 N 93 11 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.85 108.50 4.35 0.70 N 94 11 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 114.70 108.50 6.20 0.70 N 95 11 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.54 121.90 -4.36 0.70 N 96 11 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 113.27 108.50 4.77 0.70 N 97 11 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.71 108.50 4.21 0.70 N 98 11 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.99 108.50 5.49 0.70 N 99 11 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.69 108.50 5.19 0.70 N 100 11 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 113.82 108.50 5.32 0.70 N 101 12 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.78 108.50 4.28 0.70 N 102 12 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.32 118.90 4.42 0.60 N 103 12 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 117.10 121.90 -4.80 0.70 N 104 12 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 112.91 108.50 4.41 0.70 N 105 12 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.15 108.50 6.65 0.70 N 106 12 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.09 108.50 5.59 0.70 N 107 12 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.56 108.50 5.06 0.70 N 108 12 N1 A G 20 ? ? C6 A G 20 ? ? O6 A G 20 ? ? 115.55 119.90 -4.35 0.60 N 109 12 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 112.70 108.50 4.20 0.70 N 110 12 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.28 108.50 4.78 0.70 N 111 12 "O4'" A U 26 ? ? "C1'" A U 26 ? ? N1 A U 26 ? ? 112.84 108.50 4.34 0.70 N 112 13 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.93 108.50 5.43 0.70 N 113 13 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.28 108.50 4.78 0.70 N 114 13 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.13 108.50 4.63 0.70 N 115 13 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.27 108.50 4.77 0.70 N 116 13 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.78 108.50 6.28 0.70 N 117 13 "O4'" A U 18 ? ? "C1'" A U 18 ? ? N1 A U 18 ? ? 112.88 108.50 4.38 0.70 N 118 13 N1 A G 20 ? ? C6 A G 20 ? ? O6 A G 20 ? ? 116.17 119.90 -3.73 0.60 N 119 13 "O4'" A U 26 ? ? "C1'" A U 26 ? ? N1 A U 26 ? ? 112.93 108.50 4.43 0.70 N 120 14 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.08 108.50 4.58 0.70 N 121 14 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.13 118.90 4.23 0.60 N 122 14 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.75 121.90 -5.15 0.70 N 123 14 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 114.11 108.50 5.61 0.70 N 124 14 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.11 108.50 5.61 0.70 N 125 14 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 114.05 108.50 5.55 0.70 N 126 15 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.75 108.50 5.25 0.70 N 127 15 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.70 108.50 4.20 0.70 N 128 15 N3 A G 9 ? ? C4 A G 9 ? ? C5 A G 9 ? ? 125.57 128.60 -3.03 0.50 N 129 15 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.83 108.50 7.33 0.70 N 130 15 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.26 108.50 4.76 0.70 N 131 15 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 113.81 108.50 5.31 0.70 N 132 16 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.57 108.50 5.07 0.70 N 133 16 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 114.82 108.50 6.32 0.70 N 134 16 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 122.64 118.90 3.74 0.60 N 135 16 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 113.16 108.50 4.66 0.70 N 136 16 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.87 108.50 5.37 0.70 N 137 16 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 114.09 108.50 5.59 0.70 N 138 16 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 114.09 108.50 5.59 0.70 N 139 16 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 112.78 108.50 4.28 0.70 N 140 17 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 112.89 108.50 4.39 0.70 N 141 17 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 114.55 108.50 6.05 0.70 N 142 17 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.01 108.50 4.51 0.70 N 143 17 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 113.03 108.50 4.53 0.70 N 144 17 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 113.25 108.50 4.75 0.70 N 145 18 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.73 108.50 5.23 0.70 N 146 18 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.48 108.50 4.98 0.70 N 147 18 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.76 108.50 5.26 0.70 N 148 18 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 122.71 118.90 3.81 0.60 N 149 18 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.75 121.90 -5.15 0.70 N 150 18 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.33 108.50 6.83 0.70 N 151 18 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.34 108.50 4.84 0.70 N 152 19 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.39 108.50 5.89 0.70 N 153 19 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 112.94 108.50 4.44 0.70 N 154 19 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.21 108.50 4.71 0.70 N 155 19 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.39 108.50 6.89 0.70 N 156 20 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.79 108.50 4.29 0.70 N 157 20 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.58 108.50 5.08 0.70 N 158 20 N1 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 123.52 118.90 4.62 0.60 N 159 20 N3 A C 6 ? ? C2 A C 6 ? ? O2 A C 6 ? ? 116.62 121.90 -5.28 0.70 N 160 20 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.08 108.50 4.58 0.70 N 161 20 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 113.01 108.50 4.51 0.70 N 162 20 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 112.98 108.50 4.48 0.70 N 163 20 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 115.57 108.50 7.07 0.70 N 164 20 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 113.58 108.50 5.08 0.70 N 165 20 "O4'" A U 15 ? ? "C1'" A U 15 ? ? N1 A U 15 ? ? 112.76 108.50 4.26 0.70 N 166 20 "O4'" A A 16 ? ? "C1'" A A 16 ? ? N9 A A 16 ? ? 113.66 108.50 5.16 0.70 N 167 20 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 112.81 108.50 4.31 0.70 N 168 20 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 112.72 108.50 4.22 0.70 N 169 20 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 112.77 108.50 4.27 0.70 N 170 20 "O4'" A U 26 ? ? "C1'" A U 26 ? ? N1 A U 26 ? ? 113.41 108.50 4.91 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 1 ? ? 0.058 'SIDE CHAIN' 2 1 G A 2 ? ? 0.081 'SIDE CHAIN' 3 1 U A 4 ? ? 0.151 'SIDE CHAIN' 4 1 G A 5 ? ? 0.090 'SIDE CHAIN' 5 1 C A 6 ? ? 0.063 'SIDE CHAIN' 6 1 U A 8 ? ? 0.083 'SIDE CHAIN' 7 1 U A 10 ? ? 0.097 'SIDE CHAIN' 8 1 U A 15 ? ? 0.163 'SIDE CHAIN' 9 1 A A 17 ? ? 0.059 'SIDE CHAIN' 10 1 C A 27 ? ? 0.091 'SIDE CHAIN' 11 2 G A 2 ? ? 0.077 'SIDE CHAIN' 12 2 U A 4 ? ? 0.083 'SIDE CHAIN' 13 2 G A 5 ? ? 0.095 'SIDE CHAIN' 14 2 C A 6 ? ? 0.105 'SIDE CHAIN' 15 2 U A 8 ? ? 0.130 'SIDE CHAIN' 16 2 G A 9 ? ? 0.072 'SIDE CHAIN' 17 2 U A 10 ? ? 0.152 'SIDE CHAIN' 18 2 U A 13 ? ? 0.098 'SIDE CHAIN' 19 2 U A 14 ? ? 0.066 'SIDE CHAIN' 20 2 A A 17 ? ? 0.062 'SIDE CHAIN' 21 2 U A 26 ? ? 0.108 'SIDE CHAIN' 22 3 G A 2 ? ? 0.110 'SIDE CHAIN' 23 3 U A 4 ? ? 0.062 'SIDE CHAIN' 24 3 G A 5 ? ? 0.082 'SIDE CHAIN' 25 3 C A 6 ? ? 0.106 'SIDE CHAIN' 26 3 U A 8 ? ? 0.148 'SIDE CHAIN' 27 3 G A 9 ? ? 0.076 'SIDE CHAIN' 28 3 U A 18 ? ? 0.087 'SIDE CHAIN' 29 3 G A 19 ? ? 0.053 'SIDE CHAIN' 30 4 G A 1 ? ? 0.068 'SIDE CHAIN' 31 4 G A 2 ? ? 0.084 'SIDE CHAIN' 32 4 C A 6 ? ? 0.116 'SIDE CHAIN' 33 4 U A 10 ? ? 0.135 'SIDE CHAIN' 34 4 C A 11 ? ? 0.073 'SIDE CHAIN' 35 4 U A 15 ? ? 0.082 'SIDE CHAIN' 36 4 U A 18 ? ? 0.065 'SIDE CHAIN' 37 4 G A 20 ? ? 0.076 'SIDE CHAIN' 38 4 C A 22 ? ? 0.074 'SIDE CHAIN' 39 4 G A 25 ? ? 0.084 'SIDE CHAIN' 40 4 C A 27 ? ? 0.075 'SIDE CHAIN' 41 5 G A 2 ? ? 0.111 'SIDE CHAIN' 42 5 C A 3 ? ? 0.073 'SIDE CHAIN' 43 5 U A 4 ? ? 0.097 'SIDE CHAIN' 44 5 G A 5 ? ? 0.063 'SIDE CHAIN' 45 5 U A 8 ? ? 0.149 'SIDE CHAIN' 46 5 U A 10 ? ? 0.113 'SIDE CHAIN' 47 5 C A 11 ? ? 0.069 'SIDE CHAIN' 48 5 U A 15 ? ? 0.071 'SIDE CHAIN' 49 5 A A 17 ? ? 0.061 'SIDE CHAIN' 50 5 G A 19 ? ? 0.060 'SIDE CHAIN' 51 5 G A 25 ? ? 0.057 'SIDE CHAIN' 52 6 G A 2 ? ? 0.131 'SIDE CHAIN' 53 6 U A 4 ? ? 0.130 'SIDE CHAIN' 54 6 C A 12 ? ? 0.060 'SIDE CHAIN' 55 6 C A 23 ? ? 0.080 'SIDE CHAIN' 56 6 A A 24 ? ? 0.067 'SIDE CHAIN' 57 6 U A 26 ? ? 0.077 'SIDE CHAIN' 58 7 G A 1 ? ? 0.089 'SIDE CHAIN' 59 7 G A 2 ? ? 0.067 'SIDE CHAIN' 60 7 U A 4 ? ? 0.078 'SIDE CHAIN' 61 7 G A 5 ? ? 0.100 'SIDE CHAIN' 62 7 C A 6 ? ? 0.082 'SIDE CHAIN' 63 7 U A 8 ? ? 0.062 'SIDE CHAIN' 64 7 G A 9 ? ? 0.099 'SIDE CHAIN' 65 7 U A 10 ? ? 0.147 'SIDE CHAIN' 66 7 C A 11 ? ? 0.095 'SIDE CHAIN' 67 7 U A 13 ? ? 0.099 'SIDE CHAIN' 68 7 U A 15 ? ? 0.085 'SIDE CHAIN' 69 7 A A 17 ? ? 0.066 'SIDE CHAIN' 70 7 C A 22 ? ? 0.078 'SIDE CHAIN' 71 7 A A 24 ? ? 0.076 'SIDE CHAIN' 72 7 G A 25 ? ? 0.070 'SIDE CHAIN' 73 8 G A 1 ? ? 0.068 'SIDE CHAIN' 74 8 G A 2 ? ? 0.068 'SIDE CHAIN' 75 8 G A 5 ? ? 0.103 'SIDE CHAIN' 76 8 C A 6 ? ? 0.067 'SIDE CHAIN' 77 8 U A 7 ? ? 0.080 'SIDE CHAIN' 78 8 U A 10 ? ? 0.152 'SIDE CHAIN' 79 8 G A 20 ? ? 0.060 'SIDE CHAIN' 80 8 A A 24 ? ? 0.080 'SIDE CHAIN' 81 8 G A 25 ? ? 0.078 'SIDE CHAIN' 82 9 G A 1 ? ? 0.096 'SIDE CHAIN' 83 9 U A 4 ? ? 0.091 'SIDE CHAIN' 84 9 G A 5 ? ? 0.135 'SIDE CHAIN' 85 9 C A 6 ? ? 0.111 'SIDE CHAIN' 86 9 G A 9 ? ? 0.124 'SIDE CHAIN' 87 9 U A 10 ? ? 0.127 'SIDE CHAIN' 88 9 U A 15 ? ? 0.080 'SIDE CHAIN' 89 9 G A 20 ? ? 0.084 'SIDE CHAIN' 90 9 C A 22 ? ? 0.064 'SIDE CHAIN' 91 10 G A 2 ? ? 0.095 'SIDE CHAIN' 92 10 G A 5 ? ? 0.122 'SIDE CHAIN' 93 10 C A 6 ? ? 0.073 'SIDE CHAIN' 94 10 G A 9 ? ? 0.090 'SIDE CHAIN' 95 10 U A 10 ? ? 0.133 'SIDE CHAIN' 96 10 U A 15 ? ? 0.120 'SIDE CHAIN' 97 10 C A 22 ? ? 0.058 'SIDE CHAIN' 98 11 G A 2 ? ? 0.088 'SIDE CHAIN' 99 11 C A 3 ? ? 0.083 'SIDE CHAIN' 100 11 U A 4 ? ? 0.111 'SIDE CHAIN' 101 11 U A 10 ? ? 0.191 'SIDE CHAIN' 102 11 C A 11 ? ? 0.059 'SIDE CHAIN' 103 11 A A 17 ? ? 0.060 'SIDE CHAIN' 104 11 G A 19 ? ? 0.065 'SIDE CHAIN' 105 11 A A 24 ? ? 0.057 'SIDE CHAIN' 106 11 C A 27 ? ? 0.150 'SIDE CHAIN' 107 12 G A 2 ? ? 0.083 'SIDE CHAIN' 108 12 C A 3 ? ? 0.095 'SIDE CHAIN' 109 12 U A 4 ? ? 0.079 'SIDE CHAIN' 110 12 G A 5 ? ? 0.078 'SIDE CHAIN' 111 12 U A 7 ? ? 0.086 'SIDE CHAIN' 112 12 U A 8 ? ? 0.082 'SIDE CHAIN' 113 12 G A 9 ? ? 0.073 'SIDE CHAIN' 114 12 U A 10 ? ? 0.082 'SIDE CHAIN' 115 12 U A 15 ? ? 0.109 'SIDE CHAIN' 116 12 A A 24 ? ? 0.058 'SIDE CHAIN' 117 13 G A 1 ? ? 0.089 'SIDE CHAIN' 118 13 G A 2 ? ? 0.093 'SIDE CHAIN' 119 13 C A 6 ? ? 0.120 'SIDE CHAIN' 120 13 U A 7 ? ? 0.059 'SIDE CHAIN' 121 13 U A 10 ? ? 0.083 'SIDE CHAIN' 122 13 U A 13 ? ? 0.072 'SIDE CHAIN' 123 13 U A 15 ? ? 0.124 'SIDE CHAIN' 124 13 A A 16 ? ? 0.087 'SIDE CHAIN' 125 13 U A 18 ? ? 0.081 'SIDE CHAIN' 126 13 C A 22 ? ? 0.103 'SIDE CHAIN' 127 13 C A 23 ? ? 0.065 'SIDE CHAIN' 128 13 G A 25 ? ? 0.077 'SIDE CHAIN' 129 13 C A 27 ? ? 0.067 'SIDE CHAIN' 130 14 G A 5 ? ? 0.071 'SIDE CHAIN' 131 14 U A 7 ? ? 0.069 'SIDE CHAIN' 132 14 U A 8 ? ? 0.072 'SIDE CHAIN' 133 14 G A 9 ? ? 0.091 'SIDE CHAIN' 134 14 U A 10 ? ? 0.150 'SIDE CHAIN' 135 14 G A 20 ? ? 0.103 'SIDE CHAIN' 136 14 C A 23 ? ? 0.070 'SIDE CHAIN' 137 14 A A 24 ? ? 0.057 'SIDE CHAIN' 138 14 C A 27 ? ? 0.063 'SIDE CHAIN' 139 15 G A 2 ? ? 0.079 'SIDE CHAIN' 140 15 U A 4 ? ? 0.073 'SIDE CHAIN' 141 15 U A 8 ? ? 0.086 'SIDE CHAIN' 142 15 G A 9 ? ? 0.095 'SIDE CHAIN' 143 15 U A 10 ? ? 0.126 'SIDE CHAIN' 144 15 U A 15 ? ? 0.090 'SIDE CHAIN' 145 15 A A 16 ? ? 0.064 'SIDE CHAIN' 146 15 U A 18 ? ? 0.062 'SIDE CHAIN' 147 15 G A 20 ? ? 0.065 'SIDE CHAIN' 148 15 C A 23 ? ? 0.071 'SIDE CHAIN' 149 16 G A 2 ? ? 0.105 'SIDE CHAIN' 150 16 G A 5 ? ? 0.073 'SIDE CHAIN' 151 16 C A 6 ? ? 0.076 'SIDE CHAIN' 152 16 G A 9 ? ? 0.073 'SIDE CHAIN' 153 16 U A 10 ? ? 0.103 'SIDE CHAIN' 154 16 C A 11 ? ? 0.067 'SIDE CHAIN' 155 16 U A 15 ? ? 0.132 'SIDE CHAIN' 156 16 A A 17 ? ? 0.096 'SIDE CHAIN' 157 16 G A 25 ? ? 0.061 'SIDE CHAIN' 158 17 G A 2 ? ? 0.089 'SIDE CHAIN' 159 17 U A 4 ? ? 0.091 'SIDE CHAIN' 160 17 G A 5 ? ? 0.115 'SIDE CHAIN' 161 17 U A 8 ? ? 0.102 'SIDE CHAIN' 162 17 G A 9 ? ? 0.091 'SIDE CHAIN' 163 17 U A 10 ? ? 0.076 'SIDE CHAIN' 164 17 U A 15 ? ? 0.124 'SIDE CHAIN' 165 17 U A 18 ? ? 0.071 'SIDE CHAIN' 166 17 G A 19 ? ? 0.051 'SIDE CHAIN' 167 17 G A 25 ? ? 0.106 'SIDE CHAIN' 168 18 G A 1 ? ? 0.076 'SIDE CHAIN' 169 18 C A 3 ? ? 0.070 'SIDE CHAIN' 170 18 U A 4 ? ? 0.111 'SIDE CHAIN' 171 18 G A 9 ? ? 0.074 'SIDE CHAIN' 172 18 G A 20 ? ? 0.075 'SIDE CHAIN' 173 18 A A 24 ? ? 0.075 'SIDE CHAIN' 174 18 G A 25 ? ? 0.069 'SIDE CHAIN' 175 19 U A 4 ? ? 0.137 'SIDE CHAIN' 176 19 G A 5 ? ? 0.059 'SIDE CHAIN' 177 19 C A 6 ? ? 0.097 'SIDE CHAIN' 178 19 G A 9 ? ? 0.129 'SIDE CHAIN' 179 19 U A 10 ? ? 0.121 'SIDE CHAIN' 180 19 G A 19 ? ? 0.052 'SIDE CHAIN' 181 19 C A 23 ? ? 0.060 'SIDE CHAIN' 182 19 G A 25 ? ? 0.078 'SIDE CHAIN' 183 19 C A 27 ? ? 0.097 'SIDE CHAIN' 184 20 G A 1 ? ? 0.122 'SIDE CHAIN' 185 20 G A 2 ? ? 0.065 'SIDE CHAIN' 186 20 U A 4 ? ? 0.073 'SIDE CHAIN' 187 20 G A 9 ? ? 0.085 'SIDE CHAIN' 188 20 U A 10 ? ? 0.076 'SIDE CHAIN' 189 20 C A 11 ? ? 0.059 'SIDE CHAIN' 190 20 G A 20 ? ? 0.083 'SIDE CHAIN' 191 20 U A 21 ? ? 0.074 'SIDE CHAIN' 192 20 G A 25 ? ? 0.084 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N0J 'double helix' 2N0J 'a-form double helix' 2N0J 'hairpin loop' 2N0J 'bulge loop' 2N0J 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 27 1_555 -0.262 -0.173 0.129 1.828 -3.418 -2.106 1 A_G1:C27_A A 1 ? A 27 ? 19 1 1 A G 2 1_555 A U 26 1_555 -2.067 -0.301 0.273 2.546 -19.355 7.672 2 A_G2:U26_A A 2 ? A 26 ? 28 1 1 A C 3 1_555 A G 25 1_555 0.020 -0.044 -0.165 8.330 -20.756 -1.663 3 A_C3:G25_A A 3 ? A 25 ? 19 1 1 A U 4 1_555 A A 24 1_555 0.077 -0.067 0.107 1.638 -14.687 0.229 4 A_U4:A24_A A 4 ? A 24 ? 20 1 1 A G 5 1_555 A C 23 1_555 0.206 -0.055 -0.089 3.741 -16.605 1.383 5 A_G5:C23_A A 5 ? A 23 ? 19 1 1 A G 9 1_555 A C 22 1_555 -0.268 -0.139 -0.159 1.023 -9.569 -1.360 6 A_G9:C22_A A 9 ? A 22 ? 19 1 1 A U 10 1_555 A U 21 1_555 3.207 -1.396 0.201 -3.173 -1.725 -8.767 7 A_U10:U21_A A 10 ? A 21 ? ? ? 1 A C 11 1_555 A G 20 1_555 -0.360 -0.032 -0.655 11.216 -9.536 1.352 8 A_C11:G20_A A 11 ? A 20 ? 19 1 1 A C 12 1_555 A G 19 1_555 -0.065 -0.078 -0.300 6.440 -2.444 -2.576 9 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A U 13 1_555 A U 18 1_555 2.796 -1.858 -0.274 14.025 -7.927 11.431 10 A_U13:U18_A A 13 ? A 18 ? 16 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 27 1_555 A G 2 1_555 A U 26 1_555 0.683 -2.065 2.886 -3.354 14.864 24.785 -6.416 -1.881 1.353 31.152 7.030 29.032 1 AA_G1G2:U26C27_AA A 1 ? A 27 ? A 2 ? A 26 ? 1 A G 2 1_555 A U 26 1_555 A C 3 1_555 A G 25 1_555 -0.799 -0.831 3.137 1.193 7.820 38.415 -2.111 1.325 2.894 11.733 -1.790 39.191 2 AA_G2C3:G25U26_AA A 2 ? A 26 ? A 3 ? A 25 ? 1 A C 3 1_555 A G 25 1_555 A U 4 1_555 A A 24 1_555 -0.147 -1.161 3.494 -1.896 9.785 35.217 -3.232 -0.034 3.076 15.785 3.058 36.557 3 AA_C3U4:A24G25_AA A 3 ? A 25 ? A 4 ? A 24 ? 1 A U 4 1_555 A A 24 1_555 A G 5 1_555 A C 23 1_555 -0.533 -0.465 3.396 -1.805 14.000 32.447 -2.876 0.607 2.975 23.704 3.056 35.309 4 AA_U4G5:C23A24_AA A 4 ? A 24 ? A 5 ? A 23 ? 1 A G 5 1_555 A C 23 1_555 A G 9 1_555 A C 22 1_555 -1.036 -0.835 3.424 -3.764 13.467 33.274 -3.303 1.130 2.973 22.332 6.241 36.016 5 AA_G5G9:C22C23_AA A 5 ? A 23 ? A 9 ? A 22 ? 1 A G 9 1_555 A C 22 1_555 A U 10 1_555 A U 21 1_555 -1.561 -0.966 3.938 -1.476 19.715 50.859 -2.463 1.604 3.417 22.027 1.649 54.327 6 AA_G9U10:U21C22_AA A 9 ? A 22 ? A 10 ? A 21 ? 1 A U 10 1_555 A U 21 1_555 A C 11 1_555 A G 20 1_555 0.444 -1.770 3.285 4.002 -5.292 14.888 -2.095 1.572 3.684 -19.226 -14.539 16.292 7 AA_U10C11:G20U21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A C 11 1_555 A G 20 1_555 A C 12 1_555 A G 19 1_555 -0.764 -1.370 3.768 -3.378 12.822 23.411 -6.470 0.717 2.742 28.825 7.595 26.860 8 AA_C11C12:G19G20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A U 13 1_555 A U 18 1_555 1.114 -0.623 3.553 -4.018 2.732 46.881 -1.019 -1.745 3.413 3.423 5.035 47.118 9 AA_C12U13:U18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name RIBOSTAMYCIN _pdbx_entity_nonpoly.comp_id RIO #