HEADER METAL BINDING PROTEIN 10-MAR-15 2N0M TITLE THE SOLUTION STRUCTURE OF THE SOLUBLE FORM OF THE LIPID-MODIFIED TITLE 2 AZURIN FROM NEISSERIA GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID MODIFIED AZURIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 56-183; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 242231; SOURCE 4 STRAIN: ATCC 700825 / FA 1090; SOURCE 5 GENE: NGO0994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-C KEYWDS NEISSERIA, COPPER PROTEIN, AZURIN-FAMILY, METAL BINDING PROTEIN, KEYWDS 2 ELECTRON TRANSFER EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.R.PAULETA,M.F.MATZAPETAKIS,C.F.NOBREGA,C.CARREIRA,I.H.SARAIVA REVDAT 2 14-JUN-23 2N0M 1 REMARK SEQADV LINK REVDAT 1 20-JAN-16 2N0M 0 JRNL AUTH C.S.NOBREGA,I.H.SARAIVA,C.CARREIRA,B.DEVREESE, JRNL AUTH 2 M.MATZAPETAKIS,S.R.PAULETA JRNL TITL THE SOLUTION STRUCTURE OF THE SOLUBLE FORM OF THE JRNL TITL 2 LIPID-MODIFIED AZURIN FROM NEISSERIA GONORRHOEAE, THE JRNL TITL 3 ELECTRON DONOR OF CYTOCHROME C PEROXIDASE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1857 169 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 26589091 JRNL DOI 10.1016/J.BBABIO.2015.11.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, CNS 1.21 REMARK 3 AUTHORS : JP LINGE, M HABECK, W RIEPING, M NILGES (ARIA), REMARK 3 BRUNGER, A.T. ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104271. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 LAZ, 20.0 MM SODIUM PHOSPHATE, REMARK 210 1.0 MM SODIUM AZIDE, 5.0 MM REMARK 210 SODIUM ASCORBATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.21, CCPNMR ANALYSIS 2.4, REMARK 210 TOPSPIN 3.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 -36.61 -137.10 REMARK 500 1 ASN A 5 92.98 -161.67 REMARK 500 1 MET A 16 64.39 64.70 REMARK 500 1 ALA A 69 47.78 -106.85 REMARK 500 1 PRO A 77 98.54 -57.75 REMARK 500 1 ASP A 78 -60.85 -161.59 REMARK 500 2 ASN A 13 -166.21 -124.27 REMARK 500 2 THR A 72 -76.30 -94.87 REMARK 500 2 ASP A 73 26.24 -168.18 REMARK 500 2 PRO A 77 22.98 -69.52 REMARK 500 3 ASN A 5 98.54 -163.34 REMARK 500 3 MET A 47 83.18 -164.87 REMARK 500 3 THR A 72 54.70 -145.01 REMARK 500 3 PRO A 77 15.36 -68.22 REMARK 500 4 ASN A 13 -166.96 -121.46 REMARK 500 4 ALA A 105 39.64 -92.64 REMARK 500 5 THR A 2 -62.66 -139.52 REMARK 500 5 ASN A 13 -165.50 -122.50 REMARK 500 5 SER A 46 -55.10 -121.93 REMARK 500 5 PRO A 77 52.91 -67.67 REMARK 500 5 ASP A 79 -37.57 73.31 REMARK 500 5 MET A 122 73.85 -109.80 REMARK 500 6 THR A 2 -62.13 -97.39 REMARK 500 6 ASP A 106 -34.08 -167.97 REMARK 500 6 PRO A 116 107.79 -51.16 REMARK 500 7 MET A 47 80.59 -152.07 REMARK 500 7 PRO A 77 102.03 -56.93 REMARK 500 7 ASP A 78 -51.43 -176.89 REMARK 500 7 ASP A 106 66.71 -116.98 REMARK 500 8 MET A 16 69.37 63.10 REMARK 500 8 ALA A 69 49.80 -106.71 REMARK 500 8 THR A 72 52.63 -117.38 REMARK 500 8 PRO A 77 68.89 -68.53 REMARK 500 8 ASP A 78 -45.59 -153.97 REMARK 500 9 ASP A 73 19.97 59.52 REMARK 500 10 ALA A 3 -19.55 75.00 REMARK 500 10 THR A 72 -89.92 -102.22 REMARK 500 10 ASP A 73 35.09 -143.65 REMARK 500 10 PRO A 77 30.60 -71.76 REMARK 500 10 ALA A 80 -61.72 -104.46 REMARK 500 10 ALA A 105 40.78 -86.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 ND1 REMARK 620 2 CYS A 113 SG 126.6 REMARK 620 3 HIS A 118 ND1 107.4 125.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18636 RELATED DB: BMRB DBREF 2N0M A 3 130 UNP Q5F809 Q5F809_NEIG1 56 183 SEQADV 2N0M ALA A 1 UNP Q5F809 EXPRESSION TAG SEQADV 2N0M THR A 2 UNP Q5F809 EXPRESSION TAG SEQRES 1 A 130 ALA THR ALA GLY ASN CYS ALA ALA THR VAL GLU SER ASN SEQRES 2 A 130 ASP ASN MET GLN PHE ASN THR LYS ASP ILE GLN VAL SER SEQRES 3 A 130 LYS ALA CYS LYS GLU PHE THR ILE THR LEU LYS HIS THR SEQRES 4 A 130 GLY THR GLN PRO LYS ALA SER MET GLY HIS ASN LEU VAL SEQRES 5 A 130 ILE ALA LYS ALA GLU ASP MET ASP GLY VAL PHE LYS ASP SEQRES 6 A 130 GLY VAL GLY ALA ALA ASP THR ASP TYR VAL LYS PRO ASP SEQRES 7 A 130 ASP ALA ARG VAL VAL ALA HIS THR LYS LEU ILE GLY GLY SEQRES 8 A 130 GLY GLU GLU SER SER LEU THR LEU ASP PRO ALA LYS LEU SEQRES 9 A 130 ALA ASP GLY ASP TYR LYS PHE ALA CYS THR PHE PRO GLY SEQRES 10 A 130 HIS GLY ALA LEU MET ASN GLY LYS VAL THR LEU VAL ASP HET CU1 A 201 1 HETNAM CU1 COPPER (I) ION FORMUL 2 CU1 CU 1+ HELIX 1 1 PRO A 43 GLY A 48 1 6 HELIX 2 2 ASP A 58 GLY A 68 1 11 HELIX 3 3 ALA A 69 ASP A 73 5 5 HELIX 4 4 ASP A 100 GLY A 107 5 8 SHEET 1 A 4 GLN A 17 PHE A 18 0 SHEET 2 A 4 ALA A 7 ASN A 13 -1 N ASN A 13 O GLN A 17 SHEET 3 A 4 PHE A 32 HIS A 38 1 O THR A 35 N ALA A 8 SHEET 4 A 4 GLU A 94 LEU A 99 -1 O SER A 95 N LEU A 36 SHEET 1 B 2 ASP A 22 SER A 26 0 SHEET 2 B 2 LYS A 125 VAL A 129 1 O VAL A 129 N VAL A 25 SHEET 1 C 3 VAL A 82 HIS A 85 0 SHEET 2 C 3 VAL A 52 LYS A 55 -1 N ILE A 53 O ALA A 84 SHEET 3 C 3 TYR A 109 ALA A 112 -1 O ALA A 112 N VAL A 52 LINK ND1 HIS A 49 CU CU1 A 201 1555 1555 2.07 LINK SG CYS A 113 CU CU1 A 201 1555 1555 2.16 LINK ND1 HIS A 118 CU CU1 A 201 1555 1555 2.06 SITE 1 AC1 5 GLY A 48 HIS A 49 CYS A 113 HIS A 118 SITE 2 AC1 5 MET A 122 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1