HEADER TRANSCRIPTION/VIRAL PROTEIN 18-MAR-15 2N0Y TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN THE C-TERMINAL DOMAIN OF THE RIFT TITLE 2 VALLEY FEVER VIRUS PROTEIN NSS AND THE PH DOMAIN OF THE TFB1 SUBUNIT TITLE 3 OF TFIIH COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY DOMAIN RESIDUES 1-115; COMPND 5 SYNONYM: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT COMPND 6 TFB1, TFIIH SUBUNIT TFB1, RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 COMPND 7 KDA SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NON-STRUCTURAL PROTEIN NS-S; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: C-TERMINAL DOMAIN RESIDUES247-265; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: D9740.3, TFB1, YDR311W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RIFT VALLEY FEVER VIRUS; SOURCE 13 ORGANISM_TAXID: 11589; SOURCE 14 STRAIN: ZH-548 M12; SOURCE 15 GENE: NSS; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS TRANSCRIPTION, VIRULENCE, VIRAL PROTEIN-TRANSCRIPTION COMPLEX, DRUG KEYWDS 2 TARGET, VIRUS-HOST INTERFACE, TRANSCRIPTION-VIRAL PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.CYR,C.DE LA FUENTE,L.LECOQ,I.GUENDEL,P.R.CHABOT,K.KEHN-HALL, AUTHOR 2 J.G.OMICHINSKI REVDAT 5 14-JUN-23 2N0Y 1 REMARK SEQADV REVDAT 4 27-MAY-15 2N0Y 1 JRNL REVDAT 3 20-MAY-15 2N0Y 1 JRNL REVDAT 2 13-MAY-15 2N0Y 1 JRNL REVDAT 1 22-APR-15 2N0Y 0 JRNL AUTH N.CYR,C.DE LA FUENTE,L.LECOQ,I.GUENDEL,P.R.CHABOT, JRNL AUTH 2 K.KEHN-HALL,J.G.OMICHINSKI JRNL TITL A OMEGA XAV MOTIF IN THE RIFT VALLEY FEVER VIRUS NSS PROTEIN JRNL TITL 2 IS ESSENTIAL FOR DEGRADING P62, FORMING NUCLEAR FILAMENTS JRNL TITL 3 AND VIRULENCE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 6021 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 25918396 JRNL DOI 10.1073/PNAS.1503688112 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.3.1, CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000104283. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RNA REMARK 210 POLYMERASE II TRANSCRIPTION REMARK 210 FACTOR B SUBUNIT 1, 2 MM NON- REMARK 210 STRUCTURAL PROTEIN NS-S, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-13C; U-15N] RNA REMARK 210 POLYMERASE II TRANSCRIPTION REMARK 210 FACTOR B SUBUNIT 1, 2 MM NON- REMARK 210 STRUCTURAL PROTEIN NS-S, 100% REMARK 210 D2O; 0.5 MM [U-15N] RNA REMARK 210 POLYMERASE II TRANSCRIPTION REMARK 210 FACTOR B SUBUNIT 1, 1 MM NON- REMARK 210 STRUCTURAL PROTEIN NS-S, 90% H2O/ REMARK 210 10% D2O; 1 MM RNA POLYMERASE II REMARK 210 TRANSCRIPTION FACTOR B SUBUNIT 1, REMARK 210 0.5 MM [U-13C; U-15N] NON- REMARK 210 STRUCTURAL PROTEIN NS-S, 90% H2O/ REMARK 210 10% D2O; 0.5 MM RNA POLYMERASE REMARK 210 II TRANSCRIPTION FACTOR B REMARK 210 SUBUNIT 1, 1 MM [U-13C; U-15N] REMARK 210 NON-STRUCTURAL PROTEIN NS-S, 100% REMARK 210 D2O; 0.4 MM RNA POLYMERASE II REMARK 210 TRANSCRIPTION FACTOR B SUBUNIT 1, REMARK 210 0.2 MM [U-15N] NON-STRUCTURAL REMARK 210 PROTEIN NS-S, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HCCH-TOCSY; REMARK 210 3D HNCO; 3D HNCACB; 2D 1H-13C REMARK 210 HSQC; 3D 1H-13C NOESY; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 INTERMOLECULAR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 260 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 -8.67 75.46 REMARK 500 1 ALA A 25 133.29 -32.23 REMARK 500 1 ASN A 78 -92.18 -71.37 REMARK 500 1 GLU A 79 125.79 170.52 REMARK 500 1 SER B 252 -37.56 67.11 REMARK 500 2 ALA A 25 136.11 -31.46 REMARK 500 2 ASP A 74 -168.24 -79.60 REMARK 500 2 ASN A 78 -96.43 -78.22 REMARK 500 2 GLU A 79 120.59 -177.21 REMARK 500 2 TYR B 246 27.94 -146.52 REMARK 500 2 MET B 250 17.90 82.11 REMARK 500 2 SER B 256 -164.57 59.97 REMARK 500 2 ASP B 258 -70.94 -86.70 REMARK 500 2 ASP B 259 -39.27 169.54 REMARK 500 3 LYS A 11 -6.43 74.00 REMARK 500 3 ALA A 25 131.03 -29.41 REMARK 500 3 ASP A 74 -157.33 -93.91 REMARK 500 3 ASN A 78 -86.00 -82.46 REMARK 500 3 GLU A 79 129.32 178.91 REMARK 500 3 ASP B 259 -152.91 -140.76 REMARK 500 4 SER A 2 -11.76 69.84 REMARK 500 4 LYS A 11 -8.16 71.28 REMARK 500 4 ALA A 25 133.73 -30.00 REMARK 500 4 ASP A 35 -74.58 -71.79 REMARK 500 4 GLU A 68 -7.59 -59.02 REMARK 500 4 LYS A 70 -98.41 41.82 REMARK 500 4 GLU A 79 118.18 98.93 REMARK 500 4 MET B 250 55.06 -169.06 REMARK 500 4 ASP B 259 44.16 -164.01 REMARK 500 5 HIS A 3 -4.65 63.65 REMARK 500 5 GLU A 10 41.56 70.49 REMARK 500 5 ALA A 25 132.41 -30.29 REMARK 500 5 ASP A 35 -72.26 -97.51 REMARK 500 5 LYS A 70 48.45 -98.51 REMARK 500 5 ASP A 74 -157.59 -86.67 REMARK 500 5 ASN A 78 -86.67 -85.72 REMARK 500 5 ASP B 259 -15.89 73.76 REMARK 500 6 SER A 2 -35.88 -174.32 REMARK 500 6 ALA A 25 132.76 -25.67 REMARK 500 6 LYS A 70 -90.99 45.73 REMARK 500 6 GLU A 79 118.74 85.89 REMARK 500 6 MET B 250 23.17 -143.95 REMARK 500 6 SER B 256 104.62 68.46 REMARK 500 7 SER A 2 -41.72 63.50 REMARK 500 7 LYS A 11 -4.81 72.38 REMARK 500 7 ALA A 25 132.78 -28.20 REMARK 500 7 ASP A 74 -157.57 -85.01 REMARK 500 7 ASN A 78 -89.08 -85.83 REMARK 500 7 GLU A 79 131.03 -178.74 REMARK 500 7 SER B 252 -18.92 77.50 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 23 PRO A 24 1 -149.42 REMARK 500 SER A 23 PRO A 24 3 -147.34 REMARK 500 SER A 23 PRO A 24 5 -147.94 REMARK 500 SER A 23 PRO A 24 7 -147.83 REMARK 500 SER A 23 PRO A 24 16 -147.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2M14 RELATED DB: PDB REMARK 900 RELATED ID: 2LOX RELATED DB: PDB REMARK 900 RELATED ID: 18842 RELATED DB: BMRB REMARK 900 RELATED ID: 18229 RELATED DB: BMRB REMARK 900 RELATED ID: 6225 RELATED DB: BMRB REMARK 900 RELATED ID: 1Y5O RELATED DB: PDB REMARK 900 RELATED ID: 25540 RELATED DB: BMRB DBREF 2N0Y A 1 115 UNP P32776 TFB1_YEAST 1 115 DBREF 2N0Y B 247 265 UNP P21698 NSS_RVFVZ 247 265 SEQADV 2N0Y PRO A 1 UNP P32776 MET 1 ENGINEERED MUTATION SEQADV 2N0Y GLY B 242 UNP P21698 EXPRESSION TAG SEQADV 2N0Y GLY B 243 UNP P21698 EXPRESSION TAG SEQADV 2N0Y GLY B 244 UNP P21698 EXPRESSION TAG SEQADV 2N0Y GLY B 245 UNP P21698 EXPRESSION TAG SEQADV 2N0Y TYR B 246 UNP P21698 EXPRESSION TAG SEQRES 1 A 115 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 115 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 115 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 115 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 115 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 115 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 115 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 115 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 115 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP SEQRES 1 B 24 GLY GLY GLY GLY TYR ASP VAL GLU MET GLU SER GLU GLU SEQRES 2 B 24 GLU SER ASP ASP ASP GLY PHE VAL GLU VAL ASP HELIX 1 1 ASN A 93 ASP A 113 1 21 HELIX 2 2 SER B 252 ASP B 257 1 6 SHEET 1 A 3 SER A 4 GLY A 5 0 SHEET 2 A 3 VAL A 12 ASN A 19 -1 O ILE A 16 N GLY A 5 SHEET 3 A 3 ILE A 8 PHE A 9 -1 N PHE A 9 O VAL A 12 SHEET 1 B 4 SER A 4 GLY A 5 0 SHEET 2 B 4 VAL A 12 ASN A 19 -1 O ILE A 16 N GLY A 5 SHEET 3 B 4 GLU A 26 SER A 31 -1 O GLU A 26 N ASN A 19 SHEET 4 B 4 VAL A 37 VAL A 41 -1 O HIS A 38 N TRP A 29 SHEET 1 C 3 ILE A 45 ALA A 50 0 SHEET 2 C 3 MET A 59 GLY A 64 -1 O ILE A 63 N LYS A 47 SHEET 3 C 3 ARG A 86 SER A 90 -1 O HIS A 87 N LEU A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1