HEADER ANTIMICROBIAL PEPTIDE 27-MAR-15 2N1C TITLE STRUCTURE OF PVHCT, AN ANTIMICROBIAL PEPTIDE FROM SHRIMP LITOPENAEUS TITLE 2 VANNAMEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOCYANIN SUBUNIT L2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL REGION (UNP RESIDUES 654-676); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 4 ORGANISM_COMMON: WHITE PACIFIC SHRIMP,WHITE SHRIMP; SOURCE 5 ORGANISM_TAXID: 6689 KEYWDS ANTIMICROBIAL PEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR V.W.PETIT,J.L.ROLLAND,A.BLOND,C.DJEDIAT,J.PEDUZZI,C.GOULARD, AUTHOR 2 E.BACHERE,J.DUPONT,D.DESTOUMIEUX-GARZON,S.REBUFFAT REVDAT 3 14-JUN-23 2N1C 1 REMARK REVDAT 2 27-JAN-16 2N1C 1 JRNL REVDAT 1 27-MAY-15 2N1C 0 JRNL AUTH V.W.PETIT,J.L.ROLLAND,A.BLOND,C.CAZEVIEILLE,C.DJEDIAT, JRNL AUTH 2 J.PEDUZZI,C.GOULARD,E.BACHERE,J.DUPONT,D.DESTOUMIEUX-GARZON, JRNL AUTH 3 S.REBUFFAT JRNL TITL A HEMOCYANIN-DERIVED ANTIMICROBIAL PEPTIDE FROM THE PENAEID JRNL TITL 2 SHRIMP ADOPTS AN ALPHA-HELICAL STRUCTURE THAT SPECIFICALLY JRNL TITL 3 PERMEABILIZES FUNGAL MEMBRANES. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1860 557 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 26708991 JRNL DOI 10.1016/J.BBAGEN.2015.12.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104297. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.5 MM PROTEIN, 350 MM [U-99% REMARK 210 2H] DPC, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, TOPSPIN 3.2, REMARK 210 AURELIA 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -83.10 -88.85 REMARK 500 1 HIS A 20 -95.13 -152.81 REMARK 500 2 GLU A 2 -71.23 -93.19 REMARK 500 2 ASP A 3 106.51 -160.26 REMARK 500 2 PRO A 5 -168.49 -76.70 REMARK 500 2 GLU A 19 64.94 -116.15 REMARK 500 2 HIS A 20 -97.71 -91.27 REMARK 500 2 HIS A 22 -50.92 -141.70 REMARK 500 3 GLU A 19 116.58 80.21 REMARK 500 3 HIS A 20 -75.86 -80.02 REMARK 500 4 ASP A 3 113.65 -164.22 REMARK 500 4 GLU A 19 58.78 -106.53 REMARK 500 4 HIS A 20 -118.03 67.13 REMARK 500 5 GLU A 2 -81.47 -83.12 REMARK 500 5 GLU A 19 70.91 66.00 REMARK 500 5 HIS A 22 -60.74 -95.35 REMARK 500 6 GLU A 19 67.45 -100.44 REMARK 500 6 HIS A 20 -93.93 -99.05 REMARK 500 7 GLU A 2 -84.51 -89.39 REMARK 500 7 GLU A 19 78.74 61.46 REMARK 500 8 GLU A 2 -6.89 79.57 REMARK 500 8 HIS A 20 -164.65 -123.61 REMARK 500 9 ASP A 3 -143.13 -93.08 REMARK 500 9 GLU A 19 100.50 67.16 REMARK 500 9 HIS A 22 -65.55 -96.46 REMARK 500 10 GLU A 19 81.04 66.01 REMARK 500 10 ILE A 21 -83.78 -87.63 REMARK 500 11 GLU A 2 -65.94 88.39 REMARK 500 11 ASP A 3 106.24 -165.12 REMARK 500 11 GLU A 19 70.26 -107.38 REMARK 500 11 HIS A 20 -107.19 -120.91 REMARK 500 11 HIS A 22 32.07 -140.07 REMARK 500 12 GLU A 2 -84.67 -90.61 REMARK 500 12 GLU A 19 96.83 58.07 REMARK 500 12 HIS A 20 -105.55 -96.60 REMARK 500 13 ASP A 3 99.25 71.37 REMARK 500 13 GLU A 19 67.52 -104.47 REMARK 500 13 HIS A 22 62.07 -153.13 REMARK 500 14 ASP A 3 110.62 -165.59 REMARK 500 14 ASN A 6 -60.09 -128.82 REMARK 500 14 GLU A 19 83.04 66.50 REMARK 500 14 HIS A 20 -110.60 70.63 REMARK 500 15 GLU A 19 85.18 68.86 REMARK 500 15 HIS A 20 -167.63 -103.28 REMARK 500 16 ASP A 3 112.25 73.22 REMARK 500 16 GLU A 19 48.63 -150.50 REMARK 500 16 HIS A 20 156.27 72.91 REMARK 500 16 ILE A 21 -165.82 -100.62 REMARK 500 17 ASP A 3 99.69 76.03 REMARK 500 17 GLU A 19 64.81 64.68 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25555 RELATED DB: BMRB DBREF1 2N1C A 1 23 UNP A0A059TFW7_LITVA DBREF2 2N1C A A0A059TFW7 654 676 SEQRES 1 A 23 PHE GLU ASP LEU PRO ASN PHE GLY HIS ILE GLN VAL LYS SEQRES 2 A 23 VAL PHE ASN HIS GLY GLU HIS ILE HIS HIS HELIX 1 1 PRO A 5 GLU A 19 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1