HEADER STRUCTURAL PROTEIN 04-APR-15 2N1K TITLE STRUCTURE OF THE THIRD TYPE III DOMAIN FROM HUMAN FIBRONECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD FN3 DOMAIN (UNP RESIDUES 808-905); COMPND 5 SYNONYM: FN, COLD-INSOLUBLE GLOBULIN, CIG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FN1, FN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FN3 DOMAIN, FIBRONECTIN, EXTRACELLULAR MATRIX PROTEIN, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR J.M.STINE,Y.SUN,G.ARMSTRONG,K.BRIKNAROVA REVDAT 3 01-MAY-24 2N1K 1 REMARK SEQADV REVDAT 2 25-NOV-15 2N1K 1 JRNL REVDAT 1 11-NOV-15 2N1K 0 JRNL AUTH J.M.STINE,Y.SUN,G.ARMSTRONG,B.E.BOWLER,K.BRIKNAROVA JRNL TITL STRUCTURE AND UNFOLDING OF THE THIRD TYPE III DOMAIN FROM JRNL TITL 2 HUMAN FIBRONECTIN. JRNL REF BIOCHEMISTRY V. 54 6724 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26517579 JRNL DOI 10.1021/ACS.BIOCHEM.5B00818 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, ARIA, CNS REMARK 3 AUTHORS : AGILENT (VNMRJ), LINGE, O'DONOGHUE AND NILGES REMARK 3 (ARIA), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CARTESIAN DYNAMICS AND POWELL REMARK 3 MINIMIZATION IN EXPLICIT WATER (DEFAULT ARIA REFINEMENT PROTOCOL) REMARK 4 REMARK 4 2N1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000104305. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.17 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 3FN3, 10 MM SODIUM PHOSPHATE, REMARK 210 1.8 MM POTASSIUM PHOSPHATE, 140 REMARK 210 MM SODIUM CHLORIDE, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 0.6 MM [U-99% 15N] 3FN3, 10 REMARK 210 MM SODIUM PHOSPHATE, 1.8 MM REMARK 210 POTASSIUM PHOSPHATE, 140 MM REMARK 210 SODIUM CHLORIDE, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 0.6 MM 3FN3, 10 MM SODIUM REMARK 210 PHOSPHATE, 1.8 MM POTASSIUM REMARK 210 PHOSPHATE, 140 MM SODIUM REMARK 210 CHLORIDE, 2.7 MM POTASSIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.6 REMARK 210 MM 3FN3, 10 MM SODIUM PHOSPHATE, REMARK 210 1.8 MM POTASSIUM PHOSPHATE, 140 REMARK 210 MM SODIUM CHLORIDE, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 100% D2O; REMARK 210 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 3FN3, 10 MM SODIUM PHOSPHATE, REMARK 210 1.8 MM POTASSIUM PHOSPHATE, 140 REMARK 210 MM SODIUM CHLORIDE, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 0.9 MM 3FN3, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D HBCB(CGCD)HD; 3D 1H- REMARK 210 15N NOESY; 2D 15N HMQC; 2D DQF- REMARK 210 COSY; 2D 1H-1H TOCSY; 2D 1H-1H REMARK 210 NOESY; 2D 13C/15N-FILTERED 13C/ REMARK 210 15N-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : VARIAN NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CCPNMR, ARIA, REMARK 210 CNS, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 4 38.63 -98.90 REMARK 500 1 ASP A 15 107.12 -36.76 REMARK 500 1 ASP A 22 -159.47 -133.59 REMARK 500 1 ARG A 32 156.26 -45.82 REMARK 500 1 GLU A 49 157.10 68.70 REMARK 500 1 ASN A 62 17.53 -146.41 REMARK 500 1 SER A 63 134.37 -171.40 REMARK 500 1 PRO A 101 102.81 -47.57 REMARK 500 2 THR A 7 -65.13 -99.97 REMARK 500 2 THR A 8 125.15 68.98 REMARK 500 2 ASP A 15 106.17 -36.79 REMARK 500 2 ARG A 32 152.35 -46.07 REMARK 500 2 GLU A 49 142.64 -179.82 REMARK 500 2 PRO A 101 105.93 -52.01 REMARK 500 3 MET A 4 43.37 -156.86 REMARK 500 3 ASP A 15 106.24 -39.27 REMARK 500 3 ASP A 22 -167.77 -125.41 REMARK 500 3 ARG A 32 156.83 -48.28 REMARK 500 3 GLU A 49 148.77 178.63 REMARK 500 3 ASN A 62 11.27 -149.19 REMARK 500 4 SER A 2 111.34 69.17 REMARK 500 4 PRO A 14 151.44 -49.31 REMARK 500 4 ASP A 15 106.61 -36.63 REMARK 500 4 SER A 25 131.21 -170.20 REMARK 500 4 ARG A 32 158.12 -49.54 REMARK 500 4 ASN A 62 12.46 -141.30 REMARK 500 4 PRO A 101 58.26 -68.80 REMARK 500 5 PRO A 14 154.83 -48.54 REMARK 500 5 ASP A 15 106.36 -39.31 REMARK 500 5 ASP A 22 -157.61 -118.68 REMARK 500 5 ARG A 32 156.61 -49.00 REMARK 500 5 GLU A 49 143.03 -179.84 REMARK 500 5 ASN A 62 17.19 -146.73 REMARK 500 5 LEU A 69 -175.92 -68.17 REMARK 500 5 ARG A 102 69.86 65.90 REMARK 500 6 ASP A 15 106.63 -34.98 REMARK 500 6 ASP A 22 -163.29 -111.75 REMARK 500 6 ARG A 32 156.52 -49.72 REMARK 500 6 GLU A 49 142.11 -171.31 REMARK 500 6 ASN A 62 13.87 -141.60 REMARK 500 6 LEU A 69 -175.99 -69.58 REMARK 500 6 PRO A 101 65.97 -67.95 REMARK 500 7 THR A 6 102.06 -59.51 REMARK 500 7 ALA A 9 88.44 65.95 REMARK 500 7 ASP A 15 107.69 -42.15 REMARK 500 7 ASP A 22 -167.90 -125.15 REMARK 500 7 SER A 63 136.93 -170.17 REMARK 500 7 PRO A 101 105.42 -50.70 REMARK 500 8 THR A 6 66.15 62.03 REMARK 500 8 ASP A 15 103.17 -37.05 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25564 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 T16P (UNP T817P) IS A NATURAL VARIANT. DBREF 2N1K A 7 104 UNP P02751 FINC_HUMAN 808 905 SEQADV 2N1K GLY A 1 UNP P02751 EXPRESSION TAG SEQADV 2N1K SER A 2 UNP P02751 EXPRESSION TAG SEQADV 2N1K HIS A 3 UNP P02751 EXPRESSION TAG SEQADV 2N1K MET A 4 UNP P02751 EXPRESSION TAG SEQADV 2N1K GLY A 5 UNP P02751 EXPRESSION TAG SEQADV 2N1K THR A 6 UNP P02751 EXPRESSION TAG SEQADV 2N1K PRO A 16 UNP P02751 THR 817 SEE REMARK 999 SEQADV 2N1K GLY A 105 UNP P02751 EXPRESSION TAG SEQADV 2N1K THR A 106 UNP P02751 EXPRESSION TAG SEQRES 1 A 106 GLY SER HIS MET GLY THR THR THR ALA PRO ASP ALA PRO SEQRES 2 A 106 PRO ASP PRO THR VAL ASP GLN VAL ASP ASP THR SER ILE SEQRES 3 A 106 VAL VAL ARG TRP SER ARG PRO GLN ALA PRO ILE THR GLY SEQRES 4 A 106 TYR ARG ILE VAL TYR SER PRO SER VAL GLU GLY SER SER SEQRES 5 A 106 THR GLU LEU ASN LEU PRO GLU THR ALA ASN SER VAL THR SEQRES 6 A 106 LEU SER ASP LEU GLN PRO GLY VAL GLN TYR ASN ILE THR SEQRES 7 A 106 ILE TYR ALA VAL GLU GLU ASN GLN GLU SER THR PRO VAL SEQRES 8 A 106 VAL ILE GLN GLN GLU THR THR GLY THR PRO ARG SER ASP SEQRES 9 A 106 GLY THR SHEET 1 A 3 THR A 17 VAL A 21 0 SHEET 2 A 3 SER A 25 ARG A 29 -1 O VAL A 27 N GLN A 20 SHEET 3 A 3 SER A 63 SER A 67 -1 O LEU A 66 N ILE A 26 SHEET 1 B 4 THR A 53 PRO A 58 0 SHEET 2 B 4 GLY A 39 PRO A 46 -1 N TYR A 44 O THR A 53 SHEET 3 B 4 GLN A 74 VAL A 82 -1 O ASN A 76 N SER A 45 SHEET 4 B 4 VAL A 91 GLU A 96 -1 O ILE A 93 N ILE A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1