HEADER MEMBRANE PROTEIN 05-MAY-15 2N2A TITLE SPATIAL STRUCTURE OF HER2/ERBB2 DIMERIC TRANSMEMBRANE DOMAIN IN THE TITLE 2 PRESENCE OF CYTOPLASMIC JUXTAMEMBRANE DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN (UNP RESIDUES 644-700); COMPND 5 SYNONYM: METASTATIC LYMPH NODE GENE 19 PROTEIN, MLN 19, PROTO- COMPND 6 ONCOGENE NEU, PROTO-ONCOGENE C-ERBB-2, TYROSINE KINASE-TYPE CELL COMPND 7 SURFACE RECEPTOR HER2, P185ERBB2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB2, HER2, MLN19, NEU, NGL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEMEX-1 KEYWDS HER2, ERBB2, TYROSINE KINASE, ACTIVATION, TRANSMEMBRANE, MEMBRANE KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.E.BRAGIN,K.S.MINEEV,E.BOCHAROV,O.BOCHAROVA,A.ARSENIEV REVDAT 3 14-JUN-23 2N2A 1 REMARK SEQADV REVDAT 2 22-MAR-17 2N2A 1 AUTHOR REVDAT 1 24-FEB-16 2N2A 0 JRNL AUTH P.E.BRAGIN,K.S.MINEEV,O.V.BOCHAROVA,P.E.VOLYNSKY, JRNL AUTH 2 E.V.BOCHAROV,A.S.ARSENIEV JRNL TITL HER2 TRANSMEMBRANE DOMAIN DIMERIZATION COUPLED WITH JRNL TITL 2 SELF-ASSOCIATION OF MEMBRANE-EMBEDDED CYTOPLASMIC JRNL TITL 3 JUXTAMEMBRANE REGIONS. JRNL REF J.MOL.BIOL. V. 428 52 2016 JRNL REFN ISSN 0022-2836 JRNL PMID 26585403 JRNL DOI 10.1016/J.JMB.2015.11.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000104331. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4 MM [U-100% 2H] DPC, 1 MM [U REMARK 210 -100% 13C; U-100% 15N] LABELED REMARK 210 PROTEIN, 1 MM UNLABELED PROTEIN, REMARK 210 50 MM SODIUM ACETATE, 0.1 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 4 REMARK 210 MM [U-100% 2H] DPC, 1 MM [U-100% REMARK 210 13C; U-100% 15N] LABELED PROTEIN, REMARK 210 50 MM SODIUM ACETATE, 0.1 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 4 REMARK 210 MM [U-100% 2H] DPC, 1 MM [U-100% REMARK 210 13C; U-100% 15N] LABELED PROTEIN, REMARK 210 50 MM SODIUM ACETATE, 0.1 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC; 3D HNCO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D HCACO; 3D 1H- REMARK 210 15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 -72.96 -107.53 REMARK 500 1 ALA A 5 30.93 72.22 REMARK 500 1 ARG B 104 -78.02 -48.64 REMARK 500 1 ALA B 105 38.02 75.21 REMARK 500 1 GLN B 136 98.22 -58.49 REMARK 500 1 LYS B 138 89.87 -152.99 REMARK 500 2 ARG A 4 46.09 -95.00 REMARK 500 2 ALA A 5 37.31 -142.60 REMARK 500 2 GLN A 36 100.79 -55.80 REMARK 500 2 ILE A 39 103.23 -50.52 REMARK 500 2 LYS B 138 -77.04 -51.50 REMARK 500 3 ILE A 39 103.70 -57.74 REMARK 500 3 GLU A 55 74.06 -113.71 REMARK 500 3 ARG B 104 54.36 -91.86 REMARK 500 3 ALA B 105 40.83 -149.03 REMARK 500 4 ARG A 4 61.16 63.66 REMARK 500 4 GLN A 37 -179.36 -56.54 REMARK 500 4 LYS A 38 97.69 -57.27 REMARK 500 4 GLN B 103 -70.46 -80.49 REMARK 500 4 ALA B 105 39.51 -146.51 REMARK 500 5 ARG A 4 54.14 38.28 REMARK 500 5 GLN A 37 -70.09 -97.36 REMARK 500 5 THR A 43 -74.38 -55.30 REMARK 500 5 ARG B 104 43.19 -93.73 REMARK 500 6 GLN A 36 102.21 -53.06 REMARK 500 6 ILE A 39 105.33 -50.42 REMARK 500 6 ARG B 104 172.61 -52.45 REMARK 500 6 ALA B 105 41.08 79.18 REMARK 500 6 GLN B 136 178.61 -55.87 REMARK 500 7 GLN A 36 101.14 -54.81 REMARK 500 7 ARG B 104 47.75 38.52 REMARK 500 8 GLU A 2 -167.47 -123.69 REMARK 500 8 GLN A 36 103.70 -52.82 REMARK 500 8 GLN A 37 -67.77 -99.99 REMARK 500 8 ILE A 39 97.63 -58.87 REMARK 500 8 ARG B 104 61.57 64.25 REMARK 500 9 ARG B 104 174.42 -53.55 REMARK 500 9 ALA B 105 39.73 78.76 REMARK 500 9 LYS B 138 148.49 -170.53 REMARK 500 9 ARG B 140 -174.61 -58.10 REMARK 500 9 LYS B 141 40.70 -86.84 REMARK 500 10 ARG B 104 48.47 -92.46 REMARK 500 10 ALA B 105 38.58 -144.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25593 RELATED DB: BMRB DBREF 2N2A A 1 57 UNP P04626 ERBB2_HUMAN 644 700 DBREF 2N2A B 101 157 UNP P04626 ERBB2_HUMAN 644 700 SEQADV 2N2A GLY A 58 UNP P04626 EXPRESSION TAG SEQADV 2N2A GLY B 158 UNP P04626 EXPRESSION TAG SEQRES 1 A 58 ALA GLU GLN ARG ALA SER PRO LEU THR SER ILE ILE SER SEQRES 2 A 58 ALA VAL VAL GLY ILE LEU LEU VAL VAL VAL LEU GLY VAL SEQRES 3 A 58 VAL PHE GLY ILE LEU ILE LYS ARG ARG GLN GLN LYS ILE SEQRES 4 A 58 ARG LYS TYR THR MET ARG ARG LEU LEU GLN GLU THR GLU SEQRES 5 A 58 LEU VAL GLU PRO LEU GLY SEQRES 1 B 58 ALA GLU GLN ARG ALA SER PRO LEU THR SER ILE ILE SER SEQRES 2 B 58 ALA VAL VAL GLY ILE LEU LEU VAL VAL VAL LEU GLY VAL SEQRES 3 B 58 VAL PHE GLY ILE LEU ILE LYS ARG ARG GLN GLN LYS ILE SEQRES 4 B 58 ARG LYS TYR THR MET ARG ARG LEU LEU GLN GLU THR GLU SEQRES 5 B 58 LEU VAL GLU PRO LEU GLY HELIX 1 1 SER A 6 GLN A 37 1 32 HELIX 2 2 ARG A 40 LEU A 48 1 9 HELIX 3 3 GLN A 49 GLU A 55 5 7 HELIX 4 4 SER B 106 GLN B 136 1 31 HELIX 5 5 LYS B 141 LEU B 148 1 8 HELIX 6 6 GLN B 149 GLU B 155 5 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1