HEADER DNA 06-MAY-15 2N2D TITLE STRUCTURE OF DNA G-QUADRUPLEX ADOPTED BY ALS AND FTD RELATED GGGGCC TITLE 2 REPEAT WITH G21 TO BR-G21 SUBSTITUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM) COMPND 4 P*G)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, G-QUADRUPLEX, ANTIPARALLEL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.BRCIC,J.PLAVEC REVDAT 5 15-MAY-24 2N2D 1 REMARK REVDAT 4 14-JUN-23 2N2D 1 REMARK REVDAT 3 06-NOV-19 2N2D 1 SOURCE REMARK LINK REVDAT 2 14-OCT-15 2N2D 1 JRNL REVDAT 1 23-SEP-15 2N2D 0 JRNL AUTH J.BRCIC,J.PLAVEC JRNL TITL SOLUTION STRUCTURE OF A DNA QUADRUPLEX CONTAINING ALS AND JRNL TITL 2 FTD RELATED GGGGCC REPEAT STABILIZED BY JRNL TITL 3 8-BROMODEOXYGUANOSINE SUBSTITUTION. JRNL REF NUCLEIC ACIDS RES. V. 43 8590 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 26253741 JRNL DOI 10.1093/NAR/GKV815 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 14, AMBER 14 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLMAN (AMBER), CASE, DARDEN, REMARK 3 CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, AND REMARK 3 KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000104334. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273; 298 REMARK 210 PH : 7.2; 7.2 REMARK 210 IONIC STRENGTH : 140; 140 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM DNA, 120 MM POTASSIUM REMARK 210 CHLORIDE, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O, 10% D2O; 0.5 REMARK 210 MM DNA, 120 MM POTASSIUM REMARK 210 CHLORIDE, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 100% D2O; 8%- 15, 8% REMARK 210 13 C N DNA 0.3-0.6 MM , 120 MM REMARK 210 POTASSIUM CHLORIDE, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O, 10% REMARK 210 D2O; 8%- 15 N DNA 0.3-0.6 MM , REMARK 210 120 MM POTASSIUM CHLORIDE, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-1H_TOCSY; 1H-1H_NOESY; REMARK 210 1H_1H_DQF_COSY; 1D_13C__HSQC; 1D_ REMARK 210 15N_HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DG A 10 0.06 SIDE CHAIN REMARK 500 2 DC A 6 0.06 SIDE CHAIN REMARK 500 2 DG A 10 0.07 SIDE CHAIN REMARK 500 2 DG A 15 0.07 SIDE CHAIN REMARK 500 2 DC A 18 0.06 SIDE CHAIN REMARK 500 3 DG A 10 0.06 SIDE CHAIN REMARK 500 3 DC A 18 0.06 SIDE CHAIN REMARK 500 4 DC A 6 0.07 SIDE CHAIN REMARK 500 4 DG A 10 0.07 SIDE CHAIN REMARK 500 5 DC A 6 0.07 SIDE CHAIN REMARK 500 5 DG A 10 0.06 SIDE CHAIN REMARK 500 6 DC A 18 0.06 SIDE CHAIN REMARK 500 7 DG A 15 0.05 SIDE CHAIN REMARK 500 8 DG A 10 0.07 SIDE CHAIN REMARK 500 8 DC A 18 0.06 SIDE CHAIN REMARK 500 9 DG A 10 0.07 SIDE CHAIN REMARK 500 9 DC A 18 0.06 SIDE CHAIN REMARK 500 10 DC A 6 0.06 SIDE CHAIN REMARK 500 10 DC A 18 0.06 SIDE CHAIN REMARK 500 10 DG A 20 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25596 RELATED DB: BMRB DBREF 2N2D A 1 22 PDB 2N2D 2N2D 1 22 SEQRES 1 A 22 DG DG DG DG DC DC DG DG DG DG DC DC DG SEQRES 2 A 22 DG DG DG DC DC DG DG BGM DG MODRES 2N2D BGM A 21 DG HET BGM A 21 33 HETNAM BGM 8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE FORMUL 1 BGM C10 H13 BR N5 O7 P LINK O3' DG A 20 P BGM A 21 1555 1555 1.61 LINK O3' BGM A 21 P DG A 22 1555 1555 1.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1