data_2N2F # _entry.id 2N2F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104336 RCSB ? ? 2N2F PDB pdb_00002n2f 10.2210/pdb2n2f/pdb 25597 BMRB ? 10.13018/BMR25597 D_1000104336 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-09 2 'Structure model' 1 1 2015-10-14 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N2F _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-05-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_id 25597 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal ;O'Connor, C. ; 1 'White, K.' 2 'Doncescu, N.' 3 'Didenko, T.' 4 'Roth, B.L.' 5 'Czaplicki, G.' 6 'Stevens, R.C.' 7 'Wuthrich, K.' 8 'Milon, A.' 9 # _citation.id primary _citation.title 'NMR structure and dynamics of the agonist dynorphin peptide bound to the human kappa opioid receptor.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first 11852 _citation.page_last 11857 _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26372966 _citation.pdbx_database_id_DOI 10.1073/pnas.1510117112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary ;O'Connor, C. ; 1 ? primary 'White, K.L.' 2 ? primary 'Doncescu, N.' 3 ? primary 'Didenko, T.' 4 ? primary 'Roth, B.L.' 5 ? primary 'Czaplicki, G.' 6 ? primary 'Stevens, R.C.' 7 ? primary 'Wuthrich, K.' 8 ? primary 'Milon, A.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Dynorphin A(1-13)' _entity.formula_weight 1608.995 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 207-219' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proenkephalin-B, Beta-neoendorphin-dynorphin, Preprodynorphin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YGGFLRRIRPKLK _entity_poly.pdbx_seq_one_letter_code_can YGGFLRRIRPKLK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 GLY n 1 3 GLY n 1 4 PHE n 1 5 LEU n 1 6 ARG n 1 7 ARG n 1 8 ILE n 1 9 ARG n 1 10 PRO n 1 11 LYS n 1 12 LEU n 1 13 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'SYNTHESIS OF THE PEPTIDE WAS PERFORMED BY A SOLID PHASE METHOD USING FMOC CHEMISTRY.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LYS 13 13 13 LYS LYS A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N2F _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N2F _struct.title 'Solution NMR structure of Dynorphin 1-13 bound to Kappa Opioid Receptor' _struct.pdbx_model_details 'fewest violations, model2' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N2F _struct_keywords.pdbx_keywords 'HORMONE RECEPTOR' _struct_keywords.text 'GPCR, HORMONE RECEPTOR' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDYN_HUMAN _struct_ref.pdbx_db_accession P01213 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code YGGFLRRIRPKLK _struct_ref.pdbx_align_begin 207 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N2F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01213 _struct_ref_seq.db_align_beg 207 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 219 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PHE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 4 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 8 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PHE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 4 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 8 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 124.20 120.30 3.90 0.50 N 2 1 NE A ARG 9 ? ? CZ A ARG 9 ? ? NH1 A ARG 9 ? ? 123.39 120.30 3.09 0.50 N 3 2 NE A ARG 7 ? ? CZ A ARG 7 ? ? NH1 A ARG 7 ? ? 123.87 120.30 3.57 0.50 N 4 2 NE A ARG 9 ? ? CZ A ARG 9 ? ? NH1 A ARG 9 ? ? 123.60 120.30 3.30 0.50 N 5 6 NE A ARG 9 ? ? CZ A ARG 9 ? ? NH1 A ARG 9 ? ? 123.90 120.30 3.60 0.50 N 6 7 NE A ARG 7 ? ? CZ A ARG 7 ? ? NH1 A ARG 7 ? ? 123.61 120.30 3.31 0.50 N 7 7 NE A ARG 9 ? ? CZ A ARG 9 ? ? NH1 A ARG 9 ? ? 123.30 120.30 3.00 0.50 N 8 10 NE A ARG 7 ? ? CZ A ARG 7 ? ? NH1 A ARG 7 ? ? 123.81 120.30 3.51 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 9 ? ? 60.29 72.27 2 1 PRO A 10 ? ? -75.66 22.47 3 2 ARG A 6 ? ? -41.36 -15.65 4 2 ARG A 7 ? ? -46.37 -18.31 5 2 PRO A 10 ? ? -74.24 40.98 6 2 LYS A 11 ? ? -165.86 26.99 7 2 LEU A 12 ? ? -157.42 37.09 8 3 ARG A 7 ? ? -55.71 28.90 9 3 ARG A 9 ? ? -115.26 60.73 10 4 ARG A 6 ? ? -49.50 -16.16 11 4 ILE A 8 ? ? -169.76 113.42 12 4 ARG A 9 ? ? 57.04 83.44 13 4 PRO A 10 ? ? -69.26 1.52 14 4 LEU A 12 ? ? 78.93 -29.72 15 5 ARG A 6 ? ? -59.41 5.66 16 5 ARG A 7 ? ? -75.92 40.72 17 5 ILE A 8 ? ? 51.19 72.37 18 5 ARG A 9 ? ? 78.92 66.10 19 6 ARG A 6 ? ? -68.91 1.48 20 6 ILE A 8 ? ? 154.38 118.34 21 6 ARG A 9 ? ? 74.91 64.17 22 7 LEU A 5 ? ? -67.82 3.16 23 7 ARG A 6 ? ? -66.25 34.80 24 7 ILE A 8 ? ? 175.11 123.98 25 7 ARG A 9 ? ? 32.16 49.94 26 8 ARG A 6 ? ? -70.32 26.80 27 8 ARG A 7 ? ? -76.82 44.98 28 8 ILE A 8 ? ? 51.28 82.27 29 8 ARG A 9 ? ? 83.48 70.15 30 8 LYS A 11 ? ? -140.68 37.15 31 9 ARG A 6 ? ? -49.70 -13.98 32 9 ARG A 9 ? ? 74.71 82.12 33 9 PRO A 10 ? ? -75.46 31.84 34 9 LYS A 11 ? ? 59.93 8.52 35 9 LEU A 12 ? ? -155.02 46.52 36 10 PRO A 10 ? ? -82.80 40.47 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 ARG A 7 ? ? ILE A 8 ? ? 149.92 2 6 ARG A 7 ? ? ILE A 8 ? ? 140.68 3 9 ARG A 7 ? ? ILE A 8 ? ? 146.83 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 ARG A 9 ? ? 0.093 'SIDE CHAIN' 2 7 TYR A 1 ? ? 0.070 'SIDE CHAIN' 3 9 ARG A 6 ? ? 0.080 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N2F _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.2 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2N2F _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N2F _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1 mM [U-15N-GFLI] Dynorphin 1, 150 mM potassium chloride, 40 mM [U-2H] MES, 100 uM DSS, 10 uM KOR, 8 mM DDM, 1.6 mM CHS, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;1 mM [U-15N-GFLIR; U-13C-R] Dynorphin 1, 150 mM potassium chloride, 40 mM [U-2H] MES, 100 uM DSS, 10 uM KOR, 8 mM DDM, 1.6 mM CHS, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Dynorphin 1-13-1' 1 ? mM '[U-15N-GFLI]' 1 'potassium chloride-2' 150 ? mM ? 1 MES-3 40 ? mM '[U-2H]' 1 DSS-4 100 ? uM ? 1 KOR-5 10 ? uM ? 1 DDM-6 8 ? mM ? 1 CHS-7 1.6 ? mM ? 1 'Dynorphin 1-13-8' 1 ? mM '[U-15N-GFLIR; U-13C-R]' 2 'potassium chloride-9' 150 ? mM ? 2 MES-10 40 ? mM '[U-2H]' 2 DSS-11 100 ? uM ? 2 KOR-12 10 ? uM ? 2 DDM-13 8 ? mM ? 2 CHS-14 1.6 ? mM ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.1 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 280 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-15N HSQC' 1 4 2 '2D 1H-13C HSQC' 1 5 2 '2D HNCACB' 1 6 1 '15N T1 T2 hetNOE' 1 7 2 '15N T2' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N2F _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 56 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count 14 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 42 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 2 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 2 # _pdbx_nmr_refine.entry_id 2N2F _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' processing TopSpin 3.2 1 'Bruker Biospin' 'peak picking' TopSpin 3.2 2 'Bruker Biospin' 'chemical shift assignment' TopSpin 3.2 3 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' 'geometry optimization' Amber 14 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' 'structure solution' Amber 14 5 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' refinement Amber 14 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 GLY N N N N 28 GLY CA C N N 29 GLY C C N N 30 GLY O O N N 31 GLY OXT O N N 32 GLY H H N N 33 GLY H2 H N N 34 GLY HA2 H N N 35 GLY HA3 H N N 36 GLY HXT H N N 37 ILE N N N N 38 ILE CA C N S 39 ILE C C N N 40 ILE O O N N 41 ILE CB C N S 42 ILE CG1 C N N 43 ILE CG2 C N N 44 ILE CD1 C N N 45 ILE OXT O N N 46 ILE H H N N 47 ILE H2 H N N 48 ILE HA H N N 49 ILE HB H N N 50 ILE HG12 H N N 51 ILE HG13 H N N 52 ILE HG21 H N N 53 ILE HG22 H N N 54 ILE HG23 H N N 55 ILE HD11 H N N 56 ILE HD12 H N N 57 ILE HD13 H N N 58 ILE HXT H N N 59 LEU N N N N 60 LEU CA C N S 61 LEU C C N N 62 LEU O O N N 63 LEU CB C N N 64 LEU CG C N N 65 LEU CD1 C N N 66 LEU CD2 C N N 67 LEU OXT O N N 68 LEU H H N N 69 LEU H2 H N N 70 LEU HA H N N 71 LEU HB2 H N N 72 LEU HB3 H N N 73 LEU HG H N N 74 LEU HD11 H N N 75 LEU HD12 H N N 76 LEU HD13 H N N 77 LEU HD21 H N N 78 LEU HD22 H N N 79 LEU HD23 H N N 80 LEU HXT H N N 81 LYS N N N N 82 LYS CA C N S 83 LYS C C N N 84 LYS O O N N 85 LYS CB C N N 86 LYS CG C N N 87 LYS CD C N N 88 LYS CE C N N 89 LYS NZ N N N 90 LYS OXT O N N 91 LYS H H N N 92 LYS H2 H N N 93 LYS HA H N N 94 LYS HB2 H N N 95 LYS HB3 H N N 96 LYS HG2 H N N 97 LYS HG3 H N N 98 LYS HD2 H N N 99 LYS HD3 H N N 100 LYS HE2 H N N 101 LYS HE3 H N N 102 LYS HZ1 H N N 103 LYS HZ2 H N N 104 LYS HZ3 H N N 105 LYS HXT H N N 106 PHE N N N N 107 PHE CA C N S 108 PHE C C N N 109 PHE O O N N 110 PHE CB C N N 111 PHE CG C Y N 112 PHE CD1 C Y N 113 PHE CD2 C Y N 114 PHE CE1 C Y N 115 PHE CE2 C Y N 116 PHE CZ C Y N 117 PHE OXT O N N 118 PHE H H N N 119 PHE H2 H N N 120 PHE HA H N N 121 PHE HB2 H N N 122 PHE HB3 H N N 123 PHE HD1 H N N 124 PHE HD2 H N N 125 PHE HE1 H N N 126 PHE HE2 H N N 127 PHE HZ H N N 128 PHE HXT H N N 129 PRO N N N N 130 PRO CA C N S 131 PRO C C N N 132 PRO O O N N 133 PRO CB C N N 134 PRO CG C N N 135 PRO CD C N N 136 PRO OXT O N N 137 PRO H H N N 138 PRO HA H N N 139 PRO HB2 H N N 140 PRO HB3 H N N 141 PRO HG2 H N N 142 PRO HG3 H N N 143 PRO HD2 H N N 144 PRO HD3 H N N 145 PRO HXT H N N 146 TYR N N N N 147 TYR CA C N S 148 TYR C C N N 149 TYR O O N N 150 TYR CB C N N 151 TYR CG C Y N 152 TYR CD1 C Y N 153 TYR CD2 C Y N 154 TYR CE1 C Y N 155 TYR CE2 C Y N 156 TYR CZ C Y N 157 TYR OH O N N 158 TYR OXT O N N 159 TYR H H N N 160 TYR H2 H N N 161 TYR HA H N N 162 TYR HB2 H N N 163 TYR HB3 H N N 164 TYR HD1 H N N 165 TYR HD2 H N N 166 TYR HE1 H N N 167 TYR HE2 H N N 168 TYR HH H N N 169 TYR HXT H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 GLY N CA sing N N 27 GLY N H sing N N 28 GLY N H2 sing N N 29 GLY CA C sing N N 30 GLY CA HA2 sing N N 31 GLY CA HA3 sing N N 32 GLY C O doub N N 33 GLY C OXT sing N N 34 GLY OXT HXT sing N N 35 ILE N CA sing N N 36 ILE N H sing N N 37 ILE N H2 sing N N 38 ILE CA C sing N N 39 ILE CA CB sing N N 40 ILE CA HA sing N N 41 ILE C O doub N N 42 ILE C OXT sing N N 43 ILE CB CG1 sing N N 44 ILE CB CG2 sing N N 45 ILE CB HB sing N N 46 ILE CG1 CD1 sing N N 47 ILE CG1 HG12 sing N N 48 ILE CG1 HG13 sing N N 49 ILE CG2 HG21 sing N N 50 ILE CG2 HG22 sing N N 51 ILE CG2 HG23 sing N N 52 ILE CD1 HD11 sing N N 53 ILE CD1 HD12 sing N N 54 ILE CD1 HD13 sing N N 55 ILE OXT HXT sing N N 56 LEU N CA sing N N 57 LEU N H sing N N 58 LEU N H2 sing N N 59 LEU CA C sing N N 60 LEU CA CB sing N N 61 LEU CA HA sing N N 62 LEU C O doub N N 63 LEU C OXT sing N N 64 LEU CB CG sing N N 65 LEU CB HB2 sing N N 66 LEU CB HB3 sing N N 67 LEU CG CD1 sing N N 68 LEU CG CD2 sing N N 69 LEU CG HG sing N N 70 LEU CD1 HD11 sing N N 71 LEU CD1 HD12 sing N N 72 LEU CD1 HD13 sing N N 73 LEU CD2 HD21 sing N N 74 LEU CD2 HD22 sing N N 75 LEU CD2 HD23 sing N N 76 LEU OXT HXT sing N N 77 LYS N CA sing N N 78 LYS N H sing N N 79 LYS N H2 sing N N 80 LYS CA C sing N N 81 LYS CA CB sing N N 82 LYS CA HA sing N N 83 LYS C O doub N N 84 LYS C OXT sing N N 85 LYS CB CG sing N N 86 LYS CB HB2 sing N N 87 LYS CB HB3 sing N N 88 LYS CG CD sing N N 89 LYS CG HG2 sing N N 90 LYS CG HG3 sing N N 91 LYS CD CE sing N N 92 LYS CD HD2 sing N N 93 LYS CD HD3 sing N N 94 LYS CE NZ sing N N 95 LYS CE HE2 sing N N 96 LYS CE HE3 sing N N 97 LYS NZ HZ1 sing N N 98 LYS NZ HZ2 sing N N 99 LYS NZ HZ3 sing N N 100 LYS OXT HXT sing N N 101 PHE N CA sing N N 102 PHE N H sing N N 103 PHE N H2 sing N N 104 PHE CA C sing N N 105 PHE CA CB sing N N 106 PHE CA HA sing N N 107 PHE C O doub N N 108 PHE C OXT sing N N 109 PHE CB CG sing N N 110 PHE CB HB2 sing N N 111 PHE CB HB3 sing N N 112 PHE CG CD1 doub Y N 113 PHE CG CD2 sing Y N 114 PHE CD1 CE1 sing Y N 115 PHE CD1 HD1 sing N N 116 PHE CD2 CE2 doub Y N 117 PHE CD2 HD2 sing N N 118 PHE CE1 CZ doub Y N 119 PHE CE1 HE1 sing N N 120 PHE CE2 CZ sing Y N 121 PHE CE2 HE2 sing N N 122 PHE CZ HZ sing N N 123 PHE OXT HXT sing N N 124 PRO N CA sing N N 125 PRO N CD sing N N 126 PRO N H sing N N 127 PRO CA C sing N N 128 PRO CA CB sing N N 129 PRO CA HA sing N N 130 PRO C O doub N N 131 PRO C OXT sing N N 132 PRO CB CG sing N N 133 PRO CB HB2 sing N N 134 PRO CB HB3 sing N N 135 PRO CG CD sing N N 136 PRO CG HG2 sing N N 137 PRO CG HG3 sing N N 138 PRO CD HD2 sing N N 139 PRO CD HD3 sing N N 140 PRO OXT HXT sing N N 141 TYR N CA sing N N 142 TYR N H sing N N 143 TYR N H2 sing N N 144 TYR CA C sing N N 145 TYR CA CB sing N N 146 TYR CA HA sing N N 147 TYR C O doub N N 148 TYR C OXT sing N N 149 TYR CB CG sing N N 150 TYR CB HB2 sing N N 151 TYR CB HB3 sing N N 152 TYR CG CD1 doub Y N 153 TYR CG CD2 sing Y N 154 TYR CD1 CE1 sing Y N 155 TYR CD1 HD1 sing N N 156 TYR CD2 CE2 doub Y N 157 TYR CD2 HD2 sing N N 158 TYR CE1 CZ doub Y N 159 TYR CE1 HE1 sing N N 160 TYR CE2 CZ sing Y N 161 TYR CE2 HE2 sing N N 162 TYR CZ OH sing N N 163 TYR OH HH sing N N 164 TYR OXT HXT sing N N 165 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker 'AVANCE III' 1 'Bruker Avance III' 800 Bruker AVANCE 2 'Bruker Avance' 700 Bruker 'AVANCE III' 3 'Bruker Avance III' 600 Bruker 'AVANCE III' 4 'Bruker Avance III' # _atom_sites.entry_id 2N2F _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_