HEADER TRANSCRIPTION, PROTEIN BINDING 08-MAY-15 2N2H TITLE SOLUTION STRUCTURE OF SDS3 IN COMPLEX WITH SIN3A COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIN3 HISTONE DEACETYLASE COREPRESSOR COMPLEX COMPONENT COMPND 3 SDS3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 205-228; COMPND 6 SYNONYM: SUPPRESSOR OF DEFECTIVE SILENCING 3 PROTEIN HOMOLOG; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PAIRED AMPHIPATHIC HELIX PROTEIN SIN3A; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 608-729; COMPND 12 SYNONYM: HISTONE DEACETYLASE COMPLEX SUBUNIT SIN3A, TRANSCRIPTIONAL COMPND 13 COREPRESSOR SIN3A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SUDS3, SDS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: SIN3A, KIAA4126; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMCSG21 KEYWDS TRANSCRIPTION REPRESSION, COREPRESSOR COMPLEX, HISTONE DEACETYLASE KEYWDS 2 COMPLEX, TRANSCRIPTION, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.CLARK,I.RADHAKRISHNAN REVDAT 4 15-MAY-24 2N2H 1 REMARK REVDAT 3 14-JUN-23 2N2H 1 SEQADV REVDAT 2 20-JAN-16 2N2H 1 JRNL REVDAT 1 15-JUL-15 2N2H 0 JRNL AUTH M.D.CLARK,R.MARCUM,R.GRAVELINE,C.W.CHAN,T.XIE,Z.CHEN,Y.DING, JRNL AUTH 2 Y.ZHANG,A.MONDRAGON,G.DAVID,I.RADHAKRISHNAN JRNL TITL STRUCTURAL INSIGHTS INTO THE ASSEMBLY OF THE HISTONE JRNL TITL 2 DEACETYLASE-ASSOCIATED SIN3L/RPD3L COREPRESSOR COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E3669 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26124119 JRNL DOI 10.1073/PNAS.1504021112 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, A.T. REMARK 3 ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000104338. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-100% 13C; U-100% REMARK 210 15N] SIN3HID, 0.5-1 MM SDS3SID, REMARK 210 90% H2O/10% D2O; 0.5-1 MM [U-100% REMARK 210 13C; U-100% 15N] SDS3SID, 0.5-1 REMARK 210 MM SIN3HID, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D CBCA(CO)NH; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA2 GLY B 659 HB3 GLU B 663 1.32 REMARK 500 HZ1 LYS B 703 OE2 GLU B 706 1.54 REMARK 500 HZ2 LYS B 701 OE1 GLU B 704 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 226 82.39 49.13 REMARK 500 1 ASN B 606 -82.44 -138.16 REMARK 500 1 GLU B 608 -56.49 -153.66 REMARK 500 1 GLU B 614 -103.94 -81.95 REMARK 500 1 ARG B 643 91.23 66.41 REMARK 500 1 LEU B 654 82.63 -69.31 REMARK 500 1 THR B 661 -43.88 -134.65 REMARK 500 1 LYS B 687 -62.12 -137.76 REMARK 500 1 ILE B 691 -60.14 -101.45 REMARK 500 1 LEU B 727 -179.16 73.03 REMARK 500 2 HIS B 609 91.72 68.61 REMARK 500 2 CYS B 613 95.15 62.51 REMARK 500 2 SER B 642 19.71 56.25 REMARK 500 2 LYS B 677 45.99 -151.59 REMARK 500 2 ILE B 691 -63.71 -93.53 REMARK 500 2 TYR B 725 86.04 41.66 REMARK 500 3 ASN A 203 112.46 69.63 REMARK 500 3 GLN A 206 91.03 63.84 REMARK 500 3 LYS A 227 173.94 62.30 REMARK 500 3 ASN B 606 126.56 72.83 REMARK 500 3 ARG B 643 80.83 61.64 REMARK 500 3 LEU B 654 27.74 -76.18 REMARK 500 3 THR B 657 -167.25 -109.17 REMARK 500 3 LEU B 658 -41.67 75.83 REMARK 500 3 SER B 662 28.00 -154.08 REMARK 500 3 TYR B 674 32.40 -95.82 REMARK 500 3 LYS B 687 -56.24 -126.12 REMARK 500 3 ILE B 691 -63.25 -98.68 REMARK 500 3 GLN B 721 -62.11 -90.10 REMARK 500 4 GLN A 206 83.64 64.96 REMARK 500 4 GLU B 608 154.99 70.52 REMARK 500 4 LEU B 641 -70.39 -75.98 REMARK 500 4 ARG B 643 96.75 71.14 REMARK 500 4 PHE B 714 -64.64 -90.92 REMARK 500 4 LYS B 728 122.43 73.10 REMARK 500 5 ASN A 203 85.81 -156.77 REMARK 500 5 TYR A 209 161.53 70.13 REMARK 500 5 LEU A 210 167.06 65.24 REMARK 500 5 ALA B 607 -25.61 -172.24 REMARK 500 5 CYS B 613 150.65 71.53 REMARK 500 5 GLU B 614 -78.18 -95.27 REMARK 500 5 LEU B 641 -70.76 -69.37 REMARK 500 5 ARG B 643 81.03 66.76 REMARK 500 5 ASP B 655 -81.86 -148.65 REMARK 500 5 ILE B 691 -66.70 -99.80 REMARK 500 5 LYS B 728 -34.43 -164.18 REMARK 500 6 ALA A 205 -165.54 61.08 REMARK 500 6 TYR A 209 -71.43 69.58 REMARK 500 6 LEU A 226 39.52 -83.34 REMARK 500 6 ILE B 610 108.92 73.16 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25599 RELATED DB: BMRB DBREF 2N2H A 205 228 UNP Q8BR65 SDS3_MOUSE 205 228 DBREF 2N2H B 608 729 UNP Q60520 SIN3A_MOUSE 608 729 SEQADV 2N2H SER A 202 UNP Q8BR65 EXPRESSION TAG SEQADV 2N2H ASN A 203 UNP Q8BR65 EXPRESSION TAG SEQADV 2N2H ALA A 204 UNP Q8BR65 EXPRESSION TAG SEQADV 2N2H SER B 605 UNP Q60520 EXPRESSION TAG SEQADV 2N2H ASN B 606 UNP Q60520 EXPRESSION TAG SEQADV 2N2H ALA B 607 UNP Q60520 EXPRESSION TAG SEQRES 1 A 27 SER ASN ALA ALA GLN LEU ASN TYR LEU LEU THR ASP GLU SEQRES 2 A 27 GLN ILE MET GLU ASP LEU ARG THR LEU ASN LYS LEU LYS SEQRES 3 A 27 SER SEQRES 1 B 125 SER ASN ALA GLU HIS ILE TYR ARG CYS GLU ASP GLU ARG SEQRES 2 B 125 PHE GLU LEU ASP VAL VAL LEU GLU THR ASN LEU ALA THR SEQRES 3 B 125 ILE ARG VAL LEU GLU ALA ILE GLN LYS LYS LEU SER ARG SEQRES 4 B 125 LEU SER ALA GLU GLU GLN ALA LYS PHE ARG LEU ASP ASN SEQRES 5 B 125 THR LEU GLY GLY THR SER GLU VAL ILE HIS ARG LYS ALA SEQRES 6 B 125 LEU GLN ARG ILE TYR ALA ASP LYS ALA ALA ASP ILE ILE SEQRES 7 B 125 ASP GLY LEU ARG LYS ASN PRO SER ILE ALA VAL PRO ILE SEQRES 8 B 125 VAL LEU LYS ARG LEU LYS MET LYS GLU GLU GLU TRP ARG SEQRES 9 B 125 GLU ALA GLN ARG GLY PHE ASN LYS VAL TRP ARG GLU GLN SEQRES 10 B 125 ASN GLU LYS TYR TYR LEU LYS SER HELIX 1 1 THR A 212 ASN A 224 1 13 HELIX 2 2 ASP B 615 SER B 642 1 28 HELIX 3 3 SER B 645 PHE B 652 1 8 HELIX 4 4 SER B 662 TYR B 674 1 13 HELIX 5 5 LYS B 677 ARG B 686 1 10 HELIX 6 6 ASN B 688 PHE B 714 1 27 HELIX 7 7 PHE B 714 LYS B 724 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1