HEADER SIGNALING PROTEIN 21-MAY-15 2N34 TITLE NMR ASSIGNMENTS AND SOLUTION STRUCTURE OF THE JAK INTERACTION REGION TITLE 2 OF SOCS5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF CYTOKINE SIGNALING 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: JAK INTERACTION REGION (UNP RESIDUES 175-244); COMPND 5 SYNONYM: SOCS-5, CYTOKINE-INDUCIBLE SH2-CONTAINING PROTEIN 5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CISH5, SOCS5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS SUPPRESSOR OF CYTOKINE SIGNALLING, JAK INTERACTION REGION, KEYWDS 2 INTRINSICALLY UNSTRUCTURED PROTEIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.R.CHANDRASHEKARAN,B.MOHANTY,E.M.LINOSSI,S.E.NICHOLSON,J.BABON, AUTHOR 2 R.S.NORTON,L.F.DAGLEY,E.W.W.LEUNG,J.M.MURPHY REVDAT 3 14-JUN-23 2N34 1 REMARK REVDAT 2 26-AUG-15 2N34 1 JRNL REVDAT 1 29-JUL-15 2N34 0 SPRSDE 29-JUL-15 2N34 2MP6 JRNL AUTH I.R.CHANDRASHEKARAN,B.MOHANTY,E.M.LINOSSI,L.F.DAGLEY, JRNL AUTH 2 E.W.LEUNG,J.M.MURPHY,J.J.BABON,S.E.NICHOLSON,R.S.NORTON JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF THE CONSERVED JRNL TITL 2 JAK INTERACTION REGION IN THE INTRINSICALLY DISORDERED JRNL TITL 3 N-TERMINUS OF SOCS5. JRNL REF BIOCHEMISTRY V. 54 4672 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26173083 JRNL DOI 10.1021/ACS.BIOCHEM.5B00619 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, OPALP REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LUGINBUHL, GUNTERT, REMARK 3 BILLETER AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000104361. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 SOCS5 JIR, 5 MM TCEP, 20 MM REMARK 210 SODIUM CITRATE, 0.02 % SODIUM REMARK 210 AZIDE, 94% H2O/6% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, NMRPIPE 3.0, REMARK 210 NMRVIEW V8.2.33, CARA, TALOS, REMARK 210 SPARKY, CYANA 3.0, ATNOS, CANDID REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 15 PHE A 220 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 180 178.03 71.49 REMARK 500 1 GLN A 182 69.75 -154.82 REMARK 500 1 LEU A 187 27.67 -151.00 REMARK 500 1 CYS A 188 176.81 59.67 REMARK 500 1 TYR A 194 25.85 -152.94 REMARK 500 1 SER A 195 -165.14 56.69 REMARK 500 1 LYS A 196 62.06 71.09 REMARK 500 1 SER A 198 99.63 -172.24 REMARK 500 1 LYS A 207 7.30 -164.51 REMARK 500 1 MET A 214 0.69 53.06 REMARK 500 1 CYS A 218 72.23 -112.30 REMARK 500 1 LYS A 234 -80.65 62.22 REMARK 500 1 GLN A 235 -164.34 -126.40 REMARK 500 1 SER A 241 156.51 74.88 REMARK 500 1 HIS A 243 -85.33 -125.12 REMARK 500 2 LEU A 177 179.97 45.08 REMARK 500 2 GLN A 182 58.47 -112.51 REMARK 500 2 VAL A 185 87.28 -161.32 REMARK 500 2 MET A 191 23.46 -142.58 REMARK 500 2 TYR A 194 18.47 -149.24 REMARK 500 2 SER A 195 19.22 -145.43 REMARK 500 2 GLN A 197 161.40 175.58 REMARK 500 2 LYS A 199 73.30 -155.86 REMARK 500 2 PHE A 202 116.08 -178.47 REMARK 500 2 SER A 203 94.92 -161.31 REMARK 500 2 ASN A 204 29.58 -141.33 REMARK 500 2 LYS A 205 -2.60 -149.38 REMARK 500 2 GLU A 212 72.72 44.09 REMARK 500 2 LEU A 213 -158.73 62.17 REMARK 500 2 CYS A 218 83.43 -156.74 REMARK 500 2 HIS A 236 -73.24 66.31 REMARK 500 3 ARG A 192 138.17 74.60 REMARK 500 3 THR A 193 157.50 179.19 REMARK 500 3 TYR A 194 13.71 -143.59 REMARK 500 3 SER A 203 -2.24 60.15 REMARK 500 3 ARG A 206 20.05 -150.06 REMARK 500 3 MET A 214 71.68 -159.98 REMARK 500 3 GLU A 216 47.84 -151.70 REMARK 500 3 VAL A 240 21.52 47.20 REMARK 500 4 GLN A 179 -164.84 52.84 REMARK 500 4 ARG A 192 47.04 -87.85 REMARK 500 4 PHE A 202 31.87 -159.37 REMARK 500 4 SER A 203 -154.86 54.54 REMARK 500 4 LYS A 205 82.45 53.24 REMARK 500 4 ARG A 206 -178.82 53.66 REMARK 500 4 MET A 214 168.35 75.04 REMARK 500 4 GLU A 216 -0.82 -140.38 REMARK 500 4 LYS A 234 -81.36 55.54 REMARK 500 4 HIS A 236 35.59 -77.02 REMARK 500 4 THR A 237 22.96 -66.47 REMARK 500 REMARK 500 THIS ENTRY HAS 314 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 243 SER A 244 1 147.21 REMARK 500 HIS A 236 THR A 237 6 -145.44 REMARK 500 SER A 203 ASN A 204 13 -149.47 REMARK 500 SER A 211 GLU A 212 13 -138.83 REMARK 500 SER A 241 PRO A 242 16 143.89 REMARK 500 ARG A 180 LEU A 181 18 134.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 10 ARG A 206 0.09 SIDE CHAIN REMARK 500 14 TYR A 194 0.09 SIDE CHAIN REMARK 500 16 ARG A 206 0.08 SIDE CHAIN REMARK 500 18 ARG A 206 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19966 RELATED DB: BMRB DBREF 2N34 A 175 244 UNP O54928 SOCS5_MOUSE 175 244 SEQRES 1 A 70 ARG SER LEU ARG GLN ARG LEU GLN ASP THR VAL GLY LEU SEQRES 2 A 70 CYS PHE PRO MET ARG THR TYR SER LYS GLN SER LYS PRO SEQRES 3 A 70 LEU PHE SER ASN LYS ARG LYS ILE HIS LEU SER GLU LEU SEQRES 4 A 70 MET LEU GLU LYS CYS PRO PHE PRO ALA GLY SER ASP LEU SEQRES 5 A 70 ALA GLN LYS TRP HIS LEU ILE LYS GLN HIS THR ALA PRO SEQRES 6 A 70 VAL SER PRO HIS SER HELIX 1 1 SER A 224 LYS A 234 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1