HEADER ELECTRON TRANSPORT 27-MAY-15 2N3B TITLE STRUCTURE OF OXIDIZED HORSE HEART CYTOCHROME C ENCAPSULATED IN REVERSE TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: DOMESTIC HORSE,EQUINE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: CYCS, CYC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PJRHRSN2 KEYWDS REVERSE MICELLE, STRUCTURAL WATER, PARAMAGNETIC, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR E.S.O'BRIEN,N.V.NUCCI,B.FUGLESTAD,C.TOMMOS,A.WAND REVDAT 3 03-FEB-16 2N3B 1 JRNL REVDAT 2 09-DEC-15 2N3B 1 JRNL REVDAT 1 28-OCT-15 2N3B 0 JRNL AUTH E.S.O'BRIEN,N.V.NUCCI,B.FUGLESTAD,C.TOMMOS,A.J.WAND JRNL TITL DEFINING THE APOPTOTIC TRIGGER: THE INTERACTION OF JRNL TITL 2 CYTOCHROME C AND CARDIOLIPIN. JRNL REF J.BIOL.CHEM. V. 290 30879 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26487716 JRNL DOI 10.1074/JBC.M115.689406 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-15. REMARK 100 THE RCSB ID CODE IS RCSB104368. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.15 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 1.5 M H2O, 25 MM SODIUM REMARK 210 PHOSPHATE, 105 MM 1-DECANOYL-RAC- REMARK 210 GLYCEROL, 45 MM REMARK 210 LAURYLDIMETHYLAMINE-N-OXIDE, 8 MM REMARK 210 HEXANOL, 8.67 M [U-99% 2H] REMARK 210 PENTANE, DEUTERATED PENTANE; 0.15 REMARK 210 MM [U-100% 15N] PROTEIN, 1.5 M REMARK 210 H2O, 25 MM SODIUM PHOSPHATE, 105 REMARK 210 MM 1-DECANOYL-RAC-GLYCEROL, 45 MM REMARK 210 LAURYLDIMETHYLAMINE-N-OXIDE, 8 MM REMARK 210 HEXANOL, 8.67 M [U-99% 2H] REMARK 210 PENTANE, DEUTERATED PENTANE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 4D 1H-15N-13C-1H REMARK 210 NOESY; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRPIPE, SPARKY, TOPSPIN, REMARK 210 X-PLOR_NIH, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 13 -67.51 -100.94 REMARK 500 1 THR A 19 -40.10 -139.66 REMARK 500 1 VAL A 20 26.85 41.98 REMARK 500 1 THR A 28 27.46 41.59 REMARK 500 1 PHE A 36 92.34 -54.50 REMARK 500 1 ASN A 70 67.92 -175.00 REMARK 500 1 PRO A 76 124.43 -39.61 REMARK 500 1 MET A 80 95.82 -175.84 REMARK 500 1 PHE A 82 -72.86 -132.37 REMARK 500 1 ALA A 83 127.00 -176.60 REMARK 500 1 LYS A 86 -69.91 -98.81 REMARK 500 2 LYS A 13 -63.64 -101.65 REMARK 500 2 THR A 19 -37.96 -135.06 REMARK 500 2 THR A 28 27.40 39.47 REMARK 500 2 PHE A 36 90.51 -55.55 REMARK 500 2 ASN A 70 69.55 -173.29 REMARK 500 2 PRO A 76 150.43 -41.12 REMARK 500 2 MET A 80 95.63 -177.85 REMARK 500 2 LYS A 86 -67.60 -104.61 REMARK 500 3 ASP A 2 87.97 -151.64 REMARK 500 3 VAL A 3 -17.28 -47.91 REMARK 500 3 LYS A 13 -65.08 -101.56 REMARK 500 3 THR A 19 -41.79 -137.96 REMARK 500 3 VAL A 20 27.52 42.49 REMARK 500 3 THR A 28 26.95 48.87 REMARK 500 3 LEU A 32 30.61 -79.24 REMARK 500 3 PHE A 36 92.83 -54.54 REMARK 500 3 ASN A 70 65.91 -167.28 REMARK 500 3 MET A 80 95.94 -175.82 REMARK 500 3 PHE A 82 -71.99 -126.04 REMARK 500 3 ALA A 83 109.60 -175.87 REMARK 500 3 LYS A 86 -68.45 -95.35 REMARK 500 4 VAL A 3 -18.63 -49.12 REMARK 500 4 LYS A 13 -64.89 -101.01 REMARK 500 4 THR A 19 -41.54 -139.91 REMARK 500 4 THR A 28 27.45 42.73 REMARK 500 4 LEU A 32 31.55 -76.97 REMARK 500 4 PHE A 36 93.69 -53.03 REMARK 500 4 ASN A 70 65.86 -168.16 REMARK 500 4 MET A 80 95.75 -169.26 REMARK 500 4 PHE A 82 -82.92 -147.96 REMARK 500 4 LYS A 86 -63.73 -102.67 REMARK 500 5 VAL A 3 -17.28 -49.62 REMARK 500 5 LYS A 13 -64.19 -101.29 REMARK 500 5 THR A 19 -37.65 -141.23 REMARK 500 5 VAL A 20 29.62 42.04 REMARK 500 5 LEU A 32 32.86 -80.33 REMARK 500 5 PHE A 36 87.71 -52.89 REMARK 500 5 THR A 40 128.77 -38.94 REMARK 500 5 ASN A 70 69.11 -172.19 REMARK 500 REMARK 500 THIS ENTRY HAS 325 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 80 SD REMARK 620 2 HEC A 201 NA 89.9 REMARK 620 3 HEC A 201 NB 90.3 89.9 REMARK 620 4 HEC A 201 NC 90.0 179.9 90.1 REMARK 620 5 HEC A 201 ND 90.1 90.0 179.6 90.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OCD RELATED DB: PDB REMARK 900 ENTRY FOR THE SAME PROTEIN SYSTEM ENCAPSULATED WITHIN REMARK 900 REVERSE MICELLES INCORPORATING PSEUDOCONTACT SHIFTS REMARK 900 RELATED ID: 25640 RELATED DB: BMRB DBREF 2N3B A 1 104 UNP P00004 CYC_HORSE 2 105 SEQRES 1 A 104 GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE VAL GLN LYS SEQRES 2 A 104 CYS ALA GLN CYS HIS THR VAL GLU LYS GLY GLY LYS HIS SEQRES 3 A 104 LYS THR GLY PRO ASN LEU HIS GLY LEU PHE GLY ARG LYS SEQRES 4 A 104 THR GLY GLN ALA PRO GLY PHE THR TYR THR ASP ALA ASN SEQRES 5 A 104 LYS ASN LYS GLY ILE THR TRP LYS GLU GLU THR LEU MET SEQRES 6 A 104 GLU TYR LEU GLU ASN PRO LYS LYS TYR ILE PRO GLY THR SEQRES 7 A 104 LYS MET ILE PHE ALA GLY ILE LYS LYS LYS THR GLU ARG SEQRES 8 A 104 GLU ASP LEU ILE ALA TYR LEU LYS LYS ALA THR ASN GLU HET HEC A 201 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 HOH *4(H2 O) HELIX 1 1 ASP A 2 CYS A 14 1 13 HELIX 2 2 ALA A 15 HIS A 18 5 4 HELIX 3 3 THR A 49 ASN A 54 1 6 HELIX 4 4 LYS A 60 GLU A 69 1 10 HELIX 5 5 ASN A 70 ILE A 75 1 6 HELIX 6 6 LYS A 87 GLU A 104 1 18 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.82 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.82 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.00 LINK SD MET A 80 FE HEC A 201 1555 1555 2.30 SITE 1 AC1 21 LYS A 13 CYS A 14 GLN A 16 CYS A 17 SITE 2 AC1 21 HIS A 18 PRO A 30 LEU A 35 GLY A 41 SITE 3 AC1 21 PHE A 46 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 21 TRP A 59 TYR A 67 LEU A 68 THR A 78 SITE 5 AC1 21 LYS A 79 MET A 80 PHE A 82 LEU A 94 SITE 6 AC1 21 LEU A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1