data_2N3O # _entry.id 2N3O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id RCSB104381 RCSB 2N3O PDB 25652 BMRB D_1000104381 WWPDB # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2AD9 PDB 'NMR structure of PTB RRM1(49-146) bound to single-stranded CUCUCU RNA' unspecified 1SJQ PDB 'NMR structure of PTB RRM1 (54-147) in the free state' unspecified 25652 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N3O _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-06-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maris, C.' 1 'Jayne, S.F.' 2 'Damberger, F.F.' 3 'Ravindranathan, S.' 4 'Allain, F.H.-T.' 5 # _citation.id primary _citation.title ;C-terminal helix folding upon pyrimidine-rich hairpin binding to PTB RRM1. Implications for PTB function in Encephalomyocarditis virus IRES activity. ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Maris, C.' 1 primary 'Jayne, S.F.' 2 primary 'Damberger, F.F.' 3 primary 'Ravindranathan, S.' 4 primary 'Allain, F.H.-T.' 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polypyrimidine tract-binding protein 1' 13375.167 1 ? ? 'UNP residues 41-163' ? 2 polymer syn ;RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*GP*GP*UP*CP*UP*UP*UP*CP*CP*AP*GP*GP*UP*CP*CP*C)-3') ; 7308.343 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PTB, 57 kDa RNA-binding protein PPTB-1, Heterogeneous nuclear ribonucleoprotein I, hnRNP I' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA ; ;GNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA ; A ? 2 polyribonucleotide no no GGGACCUGGUCUUUCCAGGUCCC GGGACCUGGUCUUUCCAGGUCCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ASP n 1 4 SER n 1 5 LYS n 1 6 LYS n 1 7 PHE n 1 8 LYS n 1 9 GLY n 1 10 ASP n 1 11 SER n 1 12 ARG n 1 13 SER n 1 14 ALA n 1 15 GLY n 1 16 VAL n 1 17 PRO n 1 18 SER n 1 19 ARG n 1 20 VAL n 1 21 ILE n 1 22 HIS n 1 23 ILE n 1 24 ARG n 1 25 LYS n 1 26 LEU n 1 27 PRO n 1 28 ILE n 1 29 ASP n 1 30 VAL n 1 31 THR n 1 32 GLU n 1 33 GLY n 1 34 GLU n 1 35 VAL n 1 36 ILE n 1 37 SER n 1 38 LEU n 1 39 GLY n 1 40 LEU n 1 41 PRO n 1 42 PHE n 1 43 GLY n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 ASN n 1 48 LEU n 1 49 LEU n 1 50 MET n 1 51 LEU n 1 52 LYS n 1 53 GLY n 1 54 LYS n 1 55 ASN n 1 56 GLN n 1 57 ALA n 1 58 PHE n 1 59 ILE n 1 60 GLU n 1 61 MET n 1 62 ASN n 1 63 THR n 1 64 GLU n 1 65 GLU n 1 66 ALA n 1 67 ALA n 1 68 ASN n 1 69 THR n 1 70 MET n 1 71 VAL n 1 72 ASN n 1 73 TYR n 1 74 TYR n 1 75 THR n 1 76 SER n 1 77 VAL n 1 78 THR n 1 79 PRO n 1 80 VAL n 1 81 LEU n 1 82 ARG n 1 83 GLY n 1 84 GLN n 1 85 PRO n 1 86 ILE n 1 87 TYR n 1 88 ILE n 1 89 GLN n 1 90 PHE n 1 91 SER n 1 92 ASN n 1 93 HIS n 1 94 LYS n 1 95 GLU n 1 96 LEU n 1 97 LYS n 1 98 THR n 1 99 ASP n 1 100 SER n 1 101 SER n 1 102 PRO n 1 103 ASN n 1 104 GLN n 1 105 ALA n 1 106 ARG n 1 107 ALA n 1 108 GLN n 1 109 ALA n 1 110 ALA n 1 111 LEU n 1 112 GLN n 1 113 ALA n 1 114 VAL n 1 115 ASN n 1 116 SER n 1 117 VAL n 1 118 GLN n 1 119 SER n 1 120 GLY n 1 121 ASN n 1 122 LEU n 1 123 ALA n 2 1 G n 2 2 G n 2 3 G n 2 4 A n 2 5 C n 2 6 C n 2 7 U n 2 8 G n 2 9 G n 2 10 U n 2 11 C n 2 12 U n 2 13 U n 2 14 U n 2 15 C n 2 16 C n 2 17 A n 2 18 G n 2 19 G n 2 20 U n 2 21 C n 2 22 C n 2 23 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PTB, PTBP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTYB11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PTBP1_HUMAN P26599 1 ;GNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA ; 41 ? 2 PDB 2N3O 2N3O 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2N3O A 1 ? 123 ? P26599 41 ? 163 ? 41 163 2 2 2N3O B 1 ? 23 ? 2N3O 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '3D HNCA' 1 2 2 '3D HN(CO)CA' 1 3 2 '3D HNCACB' 1 4 2 '3D HNCO' 1 5 2 '3D HCCH-TOCSY' 1 6 2 '3D HCCH-TOCSY' 1 7 1 '3D 1H-15N NOESY-HSQC' 1 8 2 '3D 1H-13C NOESY aliphatic-HSQC' 1 9 2 '3D 1H-13C NOESY aromatic-HSQC' 1 10 5 '2D 1H-1H TOCSY' 1 11 5 '2D 1H-1H NOESY' 1 12 3 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 13 4 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 14 3 '2D f2-13C-filtered NOESY' 3 15 2 '3D aliphatic-HSQC-NOESY' 1 16 3 '2D H2C2 TROSY' 1 17 3 '2D H6C6 TROSY' 1 18 3 '2D H8C8 TROSY' 1 19 8 '2D H2C2 TROSY' 1 20 8 '2D H6C6 TROSY' 1 21 8 '2D H8C8 TROSY' 1 22 3 '2D H5C5 TROSY' 1 23 3 ;2D H1'C1' TROSY ; 1 24 8 '2D H5C5 TROSY' 1 25 8 ;2D H1'C1' TROSY ; 1 26 1 '2D HN TROSY' 1 27 7 '2D HN TROSY' 3 28 9 '2D HN TROSY' 3 29 9 '2D HN TROSY' 1 30 1 '2D {1H}15N-NOE HSQC' 3 31 1 '2D 1H-1H NOESY' 1 32 12 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 33 12 '3D 1H-13C NOESY aliphatic' 1 34 4 '3D 1H-13C NOESY aliphatic' 1 35 11 '3D f1-13Cfiltered,f2-13C-edited NOESY aliphatic-HSQC' 1 36 4 '2D 1H-13C HSQC aliphatic' 1 37 3 '2D 1H-13C HSQC aromatic' 1 38 3 '3D 1H-13C NOESY aliphatic' 1 39 5 '3D 1H-13C NOESY aromatic' 4 40 13 '3D 1H-13C NOESY aliphatic' 4 41 13 '3D 1H-13C NOESY aromatic' 1 42 11 '2D 1H-13C HSQC aliphatic' 3 43 14 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.020 6.5 ambient ? 313 K 2 0.020 6.5 ambient ? 298 K 3 0.020 6.5 ambient ? 278 K 4 0.020 6.5 ambient ? 303 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-99% 13C; U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 3 '100% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM [U-13C; U-15N]-ribose-Ura10,Ura12,Ura14 RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 4 '100% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 5 '100% D2O' '1 mM [U-99% 13C; U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 6 '100% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 13 mg/mL Pf1 phage, 90% H2O/10% D2O' 7 '90% H2O/10% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 13 mg/mL Pf1 phage, 100% D2O ; 8 '100% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 13 mg/mL Pf1 phage, 90% H2O/10% D2O ; 9 '90% H2O/10% D2O' '1 mM [U-99% 15N] PTBRRM1, 1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 10 '90% H2O/10% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-13C; U-15N]-ribose-Cyt9,Ura11,Ura13,Gua15 RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O ; 11 '100% D2O' ;1 mM [U-99% 15N] PTBRRM1, 1 mM [U-13C; U-15N]-Ura7,Ura10,Cyt11,Ura12,Ura13,Ura14,Cyt15,Cyt16,Ura20,Cyt21,Cyt22,Cyt23 RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O ; 12 '100% D2O' '1 mM [U-99% 13C; U-99% 15N] RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 100% D2O' 13 '100% D2O' '1 mM RNA, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' 14 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker Avance 1 'Bruker Avance' 600 Bruker Avance 2 'Bruker Avance' 700 Bruker Avance 3 'Bruker Avance' 750 Bruker Avance 4 'Bruker Avance' 900 Bruker Avance 5 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2N3O _pdbx_nmr_refine.method 'simulated annealing, simulated annealing' _pdbx_nmr_refine.details ;250 CONFORMERS WERE CALCULATED WITH CYANA USING THE DEPOSITED UPL AND ACO CONSTRAINT FILES. THE 50 CONFORMERS WITH THE LOWEST CYANA TARGET FUNCTION WERE SELECTED FOR REFINEMENT WITH AMBER. 50 CYANA CONFORMERS WERE REFINED WITH AMBER USING CONSTRAINTS DEFINED IN THE DEPOSITED RST FILE. THE REFINED CONFORMERS WERE THEN SORTED BY AMBER ENERGY. THE BEST 30 WERE PRESELECTED AND FROM THESE 30 THE 20 CONFORMERS WITH LOWEST VIOLATION ENERGY WERE SORTED AND DEPOSITED. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2N3O _pdbx_nmr_details.text ;Standard 3D NOESYs measured with 150 msec mixing time. 2D NOESY with 200 msec mixing time. NOESYs measured at 5C were obtained using 3919-watergate sequence before detection. RNA Constraints for all base-paired nucleotides except the closing G9-C15 basepair of the loop were derived from NOESY spectra obtained with free RNA - the NOE patterns were the same as for the RNA in the complex but signal to noise was better. 3D NOESYs of unlabeled RNA were measured with 200 msec mixing time, and 2D NOESY of unlabeled RNA was measured with 250 msec mixing time. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation 0 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 250 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N3O _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 4.72 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.29 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N3O _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'chemical shift assignment' SPARKY 3.114 1 Goddard 'peak picking' SPARKY 3.114 2 'Herrmann, Guntert and Wuthrich' 'peak picking' UNIO/ATNOS-CANDID 10 3 'Herrmann, Guntert and Wuthrich' 'noe assignment' UNIO/ATNOS-CANDID 10 4 'Guntert, Mumenthaler and Wuthrich' 'chemical shift assignment' CYANA 3.0 5 'Guntert, Mumenthaler and Wuthrich' 'noe assignment' CYANA 3.0 6 'Guntert, Mumenthaler and Wuthrich' 'structure calculation' CYANA 3.0 7 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement AMBER 12 8 'Laskowski and MacArthur' validation ProcheckNMR 3.5.4 9 'Koradi, Billeter and Wuthrich' 'data analysis' Molmol 2K.2 10 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N3O _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N3O _struct.title ;Structure of PTB RRM1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA ; _struct.pdbx_descriptor 'Polypyrimidine tract-binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N3O _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'Polypyirimine tract binding protein, IRES, PTB, C-terminal helix formation, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 31 ? LEU A 38 ? THR A 71 LEU A 78 1 ? 8 HELX_P HELX_P2 2 THR A 63 ? THR A 75 ? THR A 103 THR A 115 1 ? 13 HELX_P HELX_P3 3 ASN A 103 ? VAL A 114 ? ASN A 143 VAL A 154 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 23 N3 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 23 O2 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 3 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 3 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 3 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 20 N3 ? ? B A 4 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 20 O4 ? ? B A 4 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 6 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 6 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 6 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 17 N1 ? ? B U 7 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 17 N6 ? ? B U 7 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 8 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 8 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 8 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 9 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 9 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 9 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B U 10 N3 ? ? ? 1_555 B U 14 O4 ? ? B U 10 B U 14 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog27 hydrog ? ? B U 10 O2 ? ? ? 1_555 B U 14 N3 ? ? B U 10 B U 14 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 45 ? MET A 50 ? VAL A 85 MET A 90 A 2 GLN A 56 ? MET A 61 ? GLN A 96 MET A 101 A 3 VAL A 20 ? ARG A 24 ? VAL A 60 ARG A 64 A 4 TYR A 87 ? PHE A 90 ? TYR A 127 PHE A 130 B 1 VAL A 80 ? LEU A 81 ? VAL A 120 LEU A 121 B 2 GLN A 84 ? PRO A 85 ? GLN A 124 PRO A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 49 ? N LEU A 89 O PHE A 58 ? O PHE A 98 A 2 3 O ILE A 59 ? O ILE A 99 N ILE A 21 ? N ILE A 61 A 3 4 N HIS A 22 ? N HIS A 62 O GLN A 89 ? O GLN A 129 B 1 2 N LEU A 81 ? N LEU A 121 O GLN A 84 ? O GLN A 124 # _atom_sites.entry_id 2N3O _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 41 41 GLY GLY A . n A 1 2 ASN 2 42 42 ASN ASN A . n A 1 3 ASP 3 43 43 ASP ASP A . n A 1 4 SER 4 44 44 SER SER A . n A 1 5 LYS 5 45 45 LYS LYS A . n A 1 6 LYS 6 46 46 LYS LYS A . n A 1 7 PHE 7 47 47 PHE PHE A . n A 1 8 LYS 8 48 48 LYS LYS A . n A 1 9 GLY 9 49 49 GLY GLY A . n A 1 10 ASP 10 50 50 ASP ASP A . n A 1 11 SER 11 51 51 SER SER A . n A 1 12 ARG 12 52 52 ARG ARG A . n A 1 13 SER 13 53 53 SER SER A . n A 1 14 ALA 14 54 54 ALA ALA A . n A 1 15 GLY 15 55 55 GLY GLY A . n A 1 16 VAL 16 56 56 VAL VAL A . n A 1 17 PRO 17 57 57 PRO PRO A . n A 1 18 SER 18 58 58 SER SER A . n A 1 19 ARG 19 59 59 ARG ARG A . n A 1 20 VAL 20 60 60 VAL VAL A . n A 1 21 ILE 21 61 61 ILE ILE A . n A 1 22 HIS 22 62 62 HIS HIS A . n A 1 23 ILE 23 63 63 ILE ILE A . n A 1 24 ARG 24 64 64 ARG ARG A . n A 1 25 LYS 25 65 65 LYS LYS A . n A 1 26 LEU 26 66 66 LEU LEU A . n A 1 27 PRO 27 67 67 PRO PRO A . n A 1 28 ILE 28 68 68 ILE ILE A . n A 1 29 ASP 29 69 69 ASP ASP A . n A 1 30 VAL 30 70 70 VAL VAL A . n A 1 31 THR 31 71 71 THR THR A . n A 1 32 GLU 32 72 72 GLU GLU A . n A 1 33 GLY 33 73 73 GLY GLY A . n A 1 34 GLU 34 74 74 GLU GLU A . n A 1 35 VAL 35 75 75 VAL VAL A . n A 1 36 ILE 36 76 76 ILE ILE A . n A 1 37 SER 37 77 77 SER SER A . n A 1 38 LEU 38 78 78 LEU LEU A . n A 1 39 GLY 39 79 79 GLY GLY A . n A 1 40 LEU 40 80 80 LEU LEU A . n A 1 41 PRO 41 81 81 PRO PRO A . n A 1 42 PHE 42 82 82 PHE PHE A . n A 1 43 GLY 43 83 83 GLY GLY A . n A 1 44 LYS 44 84 84 LYS LYS A . n A 1 45 VAL 45 85 85 VAL VAL A . n A 1 46 THR 46 86 86 THR THR A . n A 1 47 ASN 47 87 87 ASN ASN A . n A 1 48 LEU 48 88 88 LEU LEU A . n A 1 49 LEU 49 89 89 LEU LEU A . n A 1 50 MET 50 90 90 MET MET A . n A 1 51 LEU 51 91 91 LEU LEU A . n A 1 52 LYS 52 92 92 LYS LYS A . n A 1 53 GLY 53 93 93 GLY GLY A . n A 1 54 LYS 54 94 94 LYS LYS A . n A 1 55 ASN 55 95 95 ASN ASN A . n A 1 56 GLN 56 96 96 GLN GLN A . n A 1 57 ALA 57 97 97 ALA ALA A . n A 1 58 PHE 58 98 98 PHE PHE A . n A 1 59 ILE 59 99 99 ILE ILE A . n A 1 60 GLU 60 100 100 GLU GLU A . n A 1 61 MET 61 101 101 MET MET A . n A 1 62 ASN 62 102 102 ASN ASN A . n A 1 63 THR 63 103 103 THR THR A . n A 1 64 GLU 64 104 104 GLU GLU A . n A 1 65 GLU 65 105 105 GLU GLU A . n A 1 66 ALA 66 106 106 ALA ALA A . n A 1 67 ALA 67 107 107 ALA ALA A . n A 1 68 ASN 68 108 108 ASN ASN A . n A 1 69 THR 69 109 109 THR THR A . n A 1 70 MET 70 110 110 MET MET A . n A 1 71 VAL 71 111 111 VAL VAL A . n A 1 72 ASN 72 112 112 ASN ASN A . n A 1 73 TYR 73 113 113 TYR TYR A . n A 1 74 TYR 74 114 114 TYR TYR A . n A 1 75 THR 75 115 115 THR THR A . n A 1 76 SER 76 116 116 SER SER A . n A 1 77 VAL 77 117 117 VAL VAL A . n A 1 78 THR 78 118 118 THR THR A . n A 1 79 PRO 79 119 119 PRO PRO A . n A 1 80 VAL 80 120 120 VAL VAL A . n A 1 81 LEU 81 121 121 LEU LEU A . n A 1 82 ARG 82 122 122 ARG ARG A . n A 1 83 GLY 83 123 123 GLY GLY A . n A 1 84 GLN 84 124 124 GLN GLN A . n A 1 85 PRO 85 125 125 PRO PRO A . n A 1 86 ILE 86 126 126 ILE ILE A . n A 1 87 TYR 87 127 127 TYR TYR A . n A 1 88 ILE 88 128 128 ILE ILE A . n A 1 89 GLN 89 129 129 GLN GLN A . n A 1 90 PHE 90 130 130 PHE PHE A . n A 1 91 SER 91 131 131 SER SER A . n A 1 92 ASN 92 132 132 ASN ASN A . n A 1 93 HIS 93 133 133 HIS HIS A . n A 1 94 LYS 94 134 134 LYS LYS A . n A 1 95 GLU 95 135 135 GLU GLU A . n A 1 96 LEU 96 136 136 LEU LEU A . n A 1 97 LYS 97 137 137 LYS LYS A . n A 1 98 THR 98 138 138 THR THR A . n A 1 99 ASP 99 139 139 ASP ASP A . n A 1 100 SER 100 140 140 SER SER A . n A 1 101 SER 101 141 141 SER SER A . n A 1 102 PRO 102 142 142 PRO PRO A . n A 1 103 ASN 103 143 143 ASN ASN A . n A 1 104 GLN 104 144 144 GLN GLN A . n A 1 105 ALA 105 145 145 ALA ALA A . n A 1 106 ARG 106 146 146 ARG ARG A . n A 1 107 ALA 107 147 147 ALA ALA A . n A 1 108 GLN 108 148 148 GLN GLN A . n A 1 109 ALA 109 149 149 ALA ALA A . n A 1 110 ALA 110 150 150 ALA ALA A . n A 1 111 LEU 111 151 151 LEU LEU A . n A 1 112 GLN 112 152 152 GLN GLN A . n A 1 113 ALA 113 153 153 ALA ALA A . n A 1 114 VAL 114 154 154 VAL VAL A . n A 1 115 ASN 115 155 155 ASN ASN A . n A 1 116 SER 116 156 156 SER SER A . n A 1 117 VAL 117 157 157 VAL VAL A . n A 1 118 GLN 118 158 158 GLN GLN A . n A 1 119 SER 119 159 159 SER SER A . n A 1 120 GLY 120 160 160 GLY GLY A . n A 1 121 ASN 121 161 161 ASN ASN A . n A 1 122 LEU 122 162 162 LEU LEU A . n A 1 123 ALA 123 163 163 ALA ALA A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 A 4 4 4 A A B . n B 2 5 C 5 5 5 C C B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 G 8 8 8 G G B . n B 2 9 G 9 9 9 G G B . n B 2 10 U 10 10 10 U U B . n B 2 11 C 11 11 11 C C B . n B 2 12 U 12 12 12 U U B . n B 2 13 U 13 13 13 U U B . n B 2 14 U 14 14 14 U U B . n B 2 15 C 15 15 15 C C B . n B 2 16 C 16 16 16 C C B . n B 2 17 A 17 17 17 A A B . n B 2 18 G 18 18 18 G G B . n B 2 19 G 19 19 19 G G B . n B 2 20 U 20 20 20 U U B . n B 2 21 C 21 21 21 C C B . n B 2 22 C 22 22 22 C C B . n B 2 23 C 23 23 23 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1610 ? 1 MORE -14 ? 1 'SSA (A^2)' 10580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-08-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0 _pdbx_nmr_ensemble_rms.entry_id 2N3O _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id PTBRRM1-1 1 ? mM '[U-99% 15N]' 1 RNA 1 ? mM ? 1 'sodium phosphate-3' 10 ? mM ? 1 'sodium chloride-4' 20 ? mM ? 1 PTBRRM1-5 1 ? mM '[U-99% 13C; U-99% 15N]' 2 RNA 1 ? mM ? 2 'sodium phosphate-7' 10 ? mM ? 2 'sodium chloride-8' 20 ? mM ? 2 PTBRRM1-9 1 ? mM '[U-99% 15N]' 3 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 3 'sodium phosphate-11' 10 ? mM ? 3 'sodium chloride-12' 20 ? mM ? 3 PTBRRM1-13 1 ? mM '[U-99% 15N]' 4 RNA 1 ? mM '[U-13C; U-15N]-ribose-Ura10,Ura12,Ura14' 4 'sodium phosphate-15' 10 ? mM ? 4 'sodium chloride-16' 20 ? mM ? 4 PTBRRM1-17 1 ? mM '[U-99% 15N]' 5 RNA 1 ? mM ? 5 'sodium phosphate-19' 10 ? mM ? 5 'sodium chloride-20' 20 ? mM ? 5 PTBRRM1-21 1 ? mM '[U-99% 13C; U-99% 15N]' 6 RNA 1 ? mM ? 6 'sodium phosphate-23' 10 ? mM ? 6 'sodium chloride-24' 20 ? mM ? 6 PTBRRM1-25 1 ? mM '[U-99% 15N]' 7 RNA 1 ? mM ? 7 'sodium phosphate-27' 10 ? mM ? 7 'sodium chloride-28' 20 ? mM ? 7 'Pf1 phage-29' 13 ? mg/mL ? 7 PTBRRM1-30 1 ? mM '[U-99% 15N]' 8 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 8 'sodium phosphate-32' 10 ? mM ? 8 'sodium chloride-33' 20 ? mM ? 8 'Pf1 phage-34' 13 ? mg/mL ? 8 PTBRRM1-35 1 ? mM '[U-99% 15N]' 9 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 9 'sodium phosphate-37' 10 ? mM ? 9 'sodium chloride-38' 20 ? mM ? 9 'Pf1 phage-39' 13 ? mg/mL ? 9 PTBRRM1-40 1 ? mM '[U-99% 15N]' 10 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 10 'sodium phosphate-42' 10 ? mM ? 10 'sodium chloride-43' 20 ? mM ? 10 PTBRRM1-44 1 ? mM '[U-99% 15N]' 11 RNA 1 ? mM '[U-13C; U-15N]-ribose-Cyt9,Ura11,Ura13,Gua15' 11 'sodium phosphate-46' 10 ? mM ? 11 'sodium chloride-47' 20 ? mM ? 11 PTBRRM1-48 1 ? mM '[U-99% 15N]' 12 RNA 1 ? mM '[U-13C; U-15N]-Ura7,Ura10,Cyt11,Ura12,Ura13,Ura14,Cyt15,Cyt16,Ura20,Cyt21,Cyt22,Cyt23' 12 'sodium phosphate-50' 10 ? mM ? 12 'sodium chloride-51' 20 ? mM ? 12 RNA 1 ? mM '[U-99% 13C; U-99% 15N]' 13 'sodium phosphate-53' 10 ? mM ? 13 'sodium chloride-54' 20 ? mM ? 13 RNA 1 ? mM ? 14 'sodium phosphate-56' 10 ? mM ? 14 'sodium chloride-57' 20 ? mM ? 14 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N3O _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 27 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 14 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 14 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 14 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 92 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 0 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 83 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 84 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count 23 _pdbx_nmr_constraints.NOE_constraints_total 2284 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 614 _pdbx_nmr_constraints.NOE_long_range_total_count 623 _pdbx_nmr_constraints.NOE_medium_range_total_count 381 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 574 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.11 108.50 4.61 0.70 N 2 1 "C5'" B U 14 ? ? "C4'" B U 14 ? ? "C3'" B U 14 ? ? 106.12 115.20 -9.08 1.40 N 3 1 "C5'" B U 14 ? ? "C4'" B U 14 ? ? "O4'" B U 14 ? ? 115.62 109.80 5.82 0.90 N 4 2 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.27 108.50 4.77 0.70 N 5 2 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "C3'" B U 13 ? ? 104.57 115.20 -10.63 1.40 N 6 3 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.19 119.70 7.49 1.20 Y 7 5 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.35 119.70 7.65 1.20 Y 8 6 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.75 119.70 8.05 1.20 Y 9 7 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "C3'" B U 13 ? ? 105.65 115.20 -9.55 1.40 N 10 9 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.10 119.70 7.40 1.20 Y 11 9 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 115.49 109.80 5.69 0.90 N 12 10 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.73 119.70 8.03 1.20 Y 13 11 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.54 119.70 7.84 1.20 Y 14 11 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 115.55 109.80 5.75 0.90 N 15 12 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.47 108.50 4.97 0.70 N 16 12 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "C3'" B U 13 ? ? 105.83 115.20 -9.37 1.40 N 17 13 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.30 108.50 4.80 0.70 N 18 13 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 116.68 109.80 6.88 0.90 N 19 14 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.63 119.70 7.93 1.20 Y 20 14 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 115.28 108.50 6.78 0.70 N 21 15 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.65 119.70 7.95 1.20 Y 22 16 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.46 119.70 7.76 1.20 Y 23 17 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.35 119.70 7.65 1.20 Y 24 18 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 112.77 108.50 4.27 0.70 N 25 18 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.54 119.70 7.84 1.20 Y 26 19 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.54 119.70 7.84 1.20 Y 27 19 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 112.82 108.50 4.32 0.70 N 28 19 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.72 108.50 4.22 0.70 N 29 20 "C3'" B U 10 ? ? "O3'" B U 10 ? ? P B C 11 ? ? 127.20 119.70 7.50 1.20 Y 30 20 "C5'" B C 15 ? ? "C4'" B C 15 ? ? "O4'" B C 15 ? ? 115.35 109.80 5.55 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 91 ? ? -96.62 37.34 2 1 GLU A 135 ? ? 59.45 139.54 3 1 ASP A 139 ? ? -151.73 7.53 4 1 SER A 140 ? ? -142.14 -1.94 5 1 GLN A 158 ? ? 53.44 19.74 6 2 LYS A 46 ? ? -153.76 22.46 7 2 PHE A 47 ? ? -67.91 3.78 8 2 ALA A 54 ? ? 56.33 -176.56 9 2 ASP A 69 ? ? -69.07 4.78 10 2 SER A 116 ? ? -141.80 11.40 11 2 LYS A 137 ? ? -160.84 113.45 12 2 ASP A 139 ? ? -153.59 2.16 13 2 SER A 141 ? ? 59.96 138.06 14 2 VAL A 157 ? ? 62.86 145.06 15 3 ALA A 54 ? ? 56.40 -174.11 16 3 PRO A 67 ? ? -67.26 -177.26 17 3 LEU A 91 ? ? -96.90 37.62 18 3 ASN A 95 ? ? -85.37 49.03 19 3 LYS A 137 ? ? -162.40 112.27 20 3 ASP A 139 ? ? -157.72 -52.62 21 4 SER A 51 ? ? -68.79 2.65 22 4 ASN A 95 ? ? -92.36 47.23 23 4 ASP A 139 ? ? -149.62 -23.71 24 4 SER A 140 ? ? -154.47 64.59 25 5 ASN A 42 ? ? -146.29 16.33 26 5 SER A 44 ? ? 54.54 -147.96 27 5 ASP A 50 ? ? 60.72 169.03 28 5 SER A 51 ? ? -149.73 12.77 29 5 LYS A 65 ? ? 58.69 17.05 30 5 LEU A 91 ? ? -93.73 49.48 31 5 ASP A 139 ? ? -160.27 -55.26 32 6 LYS A 46 ? ? -69.52 3.15 33 6 PHE A 47 ? ? -58.32 -5.90 34 6 SER A 140 ? ? 59.95 -66.41 35 6 SER A 159 ? ? 59.02 171.69 36 8 ASP A 43 ? ? 58.31 12.44 37 8 PHE A 47 ? ? -69.50 10.83 38 8 LEU A 91 ? ? -97.62 43.19 39 8 SER A 141 ? ? 62.15 138.97 40 8 SER A 156 ? ? 60.74 170.38 41 8 SER A 159 ? ? 58.47 176.45 42 9 PHE A 47 ? ? -64.77 1.11 43 9 LYS A 134 ? ? -67.90 -174.40 44 9 GLU A 135 ? ? -49.84 159.98 45 9 ASP A 139 ? ? -142.49 -1.29 46 10 ASN A 42 ? ? -148.65 13.00 47 10 LYS A 46 ? ? -154.13 -14.82 48 10 LYS A 65 ? ? 59.84 18.18 49 10 ASN A 95 ? ? -100.53 54.62 50 10 LYS A 134 ? ? 59.32 -168.50 51 10 ASP A 139 ? ? -164.76 -43.17 52 10 SER A 156 ? ? 60.02 175.52 53 11 LYS A 45 ? ? -75.69 25.43 54 11 LYS A 46 ? ? -66.84 0.10 55 11 LEU A 91 ? ? -102.35 43.75 56 11 LYS A 92 ? ? -61.27 0.87 57 11 ASN A 95 ? ? -93.39 52.75 58 11 SER A 140 ? ? 59.28 -73.25 59 12 ASP A 43 ? ? 62.42 124.73 60 12 PHE A 47 ? ? -69.15 1.31 61 12 ARG A 59 ? ? -89.73 42.08 62 12 LEU A 91 ? ? -97.47 37.55 63 12 LYS A 137 ? ? -161.08 115.57 64 12 ASP A 139 ? ? -142.82 -43.66 65 12 SER A 141 ? ? -173.86 145.99 66 12 VAL A 157 ? ? 55.00 7.75 67 13 ARG A 52 ? ? -141.44 15.70 68 13 LYS A 94 ? ? -151.49 -157.77 69 13 ASN A 95 ? ? -113.16 61.63 70 13 ASP A 139 ? ? -157.88 9.35 71 13 SER A 140 ? ? -153.37 6.25 72 13 SER A 159 ? ? 49.40 26.47 73 14 ASN A 95 ? ? -107.45 65.70 74 14 SER A 116 ? ? -141.25 11.58 75 14 SER A 140 ? ? -164.30 -40.68 76 14 ASN A 161 ? ? 49.08 20.81 77 15 TYR A 114 ? ? -68.88 3.04 78 15 ARG A 122 ? ? 58.18 19.82 79 15 SER A 140 ? ? -151.80 3.41 80 15 ARG A 146 ? ? -140.01 -34.01 81 16 PHE A 47 ? ? -68.79 3.40 82 16 ASN A 95 ? ? -102.63 49.78 83 16 PHE A 130 ? ? -59.70 174.56 84 16 SER A 141 ? ? 62.50 133.94 85 16 SER A 156 ? ? 57.70 15.54 86 17 ALA A 54 ? ? 58.12 173.76 87 17 LEU A 91 ? ? -108.97 40.97 88 17 ASN A 95 ? ? -83.56 40.61 89 17 SER A 140 ? ? 61.31 -36.97 90 17 SER A 156 ? ? 56.79 15.00 91 17 SER A 159 ? ? 58.48 176.69 92 18 SER A 44 ? ? 57.52 18.80 93 18 ASP A 69 ? ? -68.13 8.48 94 18 LEU A 91 ? ? -97.76 53.86 95 18 SER A 141 ? ? 61.10 134.02 96 19 PHE A 47 ? ? 59.74 154.67 97 19 PRO A 57 ? ? -70.65 28.15 98 19 LEU A 91 ? ? -97.63 50.46 99 19 LYS A 92 ? ? -59.33 -5.23 100 19 ASN A 95 ? ? -85.02 49.32 101 19 ASP A 139 ? ? -137.19 -61.94 102 20 LEU A 91 ? ? -102.12 43.37 103 20 ASN A 95 ? ? -84.59 47.19 104 20 SER A 140 ? ? -164.78 -31.69 105 20 ARG A 146 ? ? -141.96 -26.38 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 G B 9 ? ? 0.054 'SIDE CHAIN' 2 5 U B 10 ? ? 0.069 'SIDE CHAIN' 3 6 U B 10 ? ? 0.071 'SIDE CHAIN' 4 8 C B 11 ? ? 0.061 'SIDE CHAIN' 5 11 U B 10 ? ? 0.066 'SIDE CHAIN' 6 12 U B 10 ? ? 0.061 'SIDE CHAIN' 7 17 TYR A 113 ? ? 0.076 'SIDE CHAIN' 8 20 U B 10 ? ? 0.065 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N3O 'a-form double helix' 2N3O 'hairpin loop' 2N3O 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 23 1_555 -0.264 -0.093 -0.507 -16.120 -4.844 -1.219 1 B_G1:C23_B B 1 ? B 23 ? 19 1 1 B G 2 1_555 B C 22 1_555 -0.285 -0.083 -0.249 -8.091 -4.382 -0.734 2 B_G2:C22_B B 2 ? B 22 ? 19 1 1 B G 3 1_555 B C 21 1_555 -0.402 -0.120 0.077 1.134 -6.281 -0.303 3 B_G3:C21_B B 3 ? B 21 ? 19 1 1 B A 4 1_555 B U 20 1_555 0.037 -0.040 -0.177 0.732 -14.357 -1.361 4 B_A4:U20_B B 4 ? B 20 ? 20 1 1 B C 5 1_555 B G 19 1_555 0.455 -0.130 0.050 0.438 -13.140 -0.177 5 B_C5:G19_B B 5 ? B 19 ? 19 1 1 B C 6 1_555 B G 18 1_555 0.331 -0.104 -0.048 1.209 -7.028 -0.449 6 B_C6:G18_B B 6 ? B 18 ? 19 1 1 B U 7 1_555 B A 17 1_555 -0.139 -0.018 -0.313 7.473 -8.112 -1.646 7 B_U7:A17_B B 7 ? B 17 ? 20 1 1 B G 8 1_555 B C 16 1_555 -0.483 -0.143 0.066 2.613 -12.128 -0.699 8 B_G8:C16_B B 8 ? B 16 ? 19 1 1 B G 9 1_555 B C 15 1_555 -0.708 -0.205 0.525 6.468 -7.320 1.714 9 B_G9:C15_B B 9 ? B 15 ? 19 1 1 B U 10 1_555 B U 14 1_555 3.345 -1.885 0.664 2.373 -9.188 12.205 10 B_U10:U14_B B 10 ? B 14 ? 16 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 23 1_555 B G 2 1_555 B C 22 1_555 -0.032 -1.664 3.200 -1.581 7.198 28.985 -4.599 -0.239 2.715 14.095 3.097 29.888 1 BB_G1G2:C22C23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B G 2 1_555 B C 22 1_555 B G 3 1_555 B C 21 1_555 0.037 -1.722 3.108 -2.916 5.046 29.419 -4.272 -0.616 2.764 9.815 5.672 29.978 2 BB_G2G3:C21C22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B G 3 1_555 B C 21 1_555 B A 4 1_555 B U 20 1_555 -0.102 -1.718 3.314 0.968 7.761 33.066 -4.129 0.323 2.845 13.404 -1.672 33.953 3 BB_G3A4:U20C21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B A 4 1_555 B U 20 1_555 B C 5 1_555 B G 19 1_555 0.100 -1.859 3.325 -1.341 4.416 33.248 -3.930 -0.388 3.053 7.672 2.329 33.558 4 BB_A4C5:G19U20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B C 5 1_555 B G 19 1_555 B C 6 1_555 B G 18 1_555 -0.072 -1.837 3.253 2.193 7.768 30.738 -4.678 0.504 2.709 14.345 -4.050 31.756 5 BB_C5C6:G18G19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B C 6 1_555 B G 18 1_555 B U 7 1_555 B A 17 1_555 -0.012 -1.664 3.149 2.396 7.256 26.866 -5.001 0.537 2.607 15.230 -5.028 27.912 6 BB_C6U7:A17G18_BB B 6 ? B 18 ? B 7 ? B 17 ? 1 B U 7 1_555 B A 17 1_555 B G 8 1_555 B C 16 1_555 0.196 -1.728 3.416 -3.309 9.968 31.058 -4.720 -0.897 2.712 17.982 5.969 32.744 7 BB_U7G8:C16A17_BB B 7 ? B 17 ? B 8 ? B 16 ? 1 B G 8 1_555 B C 16 1_555 B G 9 1_555 B C 15 1_555 -0.105 -1.951 3.004 -6.188 1.321 28.144 -4.186 -1.044 2.868 2.673 12.525 28.833 8 BB_G8G9:C15C16_BB B 8 ? B 16 ? B 9 ? B 15 ? 1 B G 9 1_555 B C 15 1_555 B U 10 1_555 B U 14 1_555 0.407 -0.551 3.366 2.028 15.159 47.608 -1.772 -0.333 3.081 18.237 -2.440 49.867 9 BB_G9U10:U14C15_BB B 9 ? B 15 ? B 10 ? B 14 ? #