HEADER PERIPLASMIC BINDING PROTEIN 17-JUN-15 2N45 TITLE EC-NMR STRUCTURE OF ESCHERICHIA COLI MALTOSE-BINDING PROTEIN TITLE 2 DETERMINED BY COMBINING EVOLUTIONARY COUPLINGS (EC) AND SPARSE NMR TITLE 3 DATA WITH A SECOND SET OF RDC DATA SIMULATED FOR AN ALTERNATIVE TITLE 4 ALIGNMENT TENSOR. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 5 ER690 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-396; COMPND 5 SYNONYM: MBP, MMBP, MALTODEXTRIN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALE, B4034, JW3994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS EC-NMR, PERIPLASMIC BINDING PROTEIN, STRUCTURAL GENOMICS, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-BIOLOGY, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.MARKS,G.T.MONTELIONE,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 15-MAY-24 2N45 1 REMARK REVDAT 4 14-JUN-23 2N45 1 REMARK REVDAT 3 12-AUG-15 2N45 1 JRNL REVDAT 2 22-JUL-15 2N45 1 JRNL REVDAT 1 01-JUL-15 2N45 0 JRNL AUTH Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.S.MARKS,G.T.MONTELIONE JRNL TITL PROTEIN STRUCTURE DETERMINATION BY COMBINING SPARSE NMR DATA JRNL TITL 2 WITH EVOLUTIONARY COUPLINGS. JRNL REF NAT.METHODS V. 12 751 2015 JRNL REFN ISSN 1548-7091 JRNL PMID 26121406 JRNL DOI 10.1038/NMETH.3455 REMARK 0 REMARK 0 THIS ENTRY 2N45 REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA IN PDB ENTRIES 2MV0 AND 1EZP DETERMINED BY REMARK 0 AUTHORS: P.ROSSI,O.F.LANGE,N.G.SGOURAKIS,Y.SONG,H.LEE, REMARK 0 J.M.ARAMINI,A.ERTEKIN,R.XIAO,T.B.ACTON,D.BAKER,G.T.MONTELIONE, REMARK 0 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) (PDB ENTRY 2MV0); REMARK 0 G.A.MUELLER,W.Y.CHOY,D.YANG,J.D.FORMAN-KAY,R.A.VENTERS,L.E.KAY REMARK 0 (PDB ENTRY 1EZP). REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2MV0 REMARK 0 AUTH O.F.LANGE,P.ROSSI,N.G.SGOURAKIS,Y.SONG,H.W.LEE,J.M.ARAMINI, REMARK 0 AUTH 2 A.ERTEKIN,R.XIAO,T.B.ACTON,G.T.MONTELIONE,D.BAKER REMARK 0 TITL DETERMINATION OF SOLUTION STRUCTURES OF PROTEINS UP TO 40 REMARK 0 TITL 2 KDA USING CS-ROSETTA WITH SPARSE NMR DATA FROM DEUTERATED REMARK 0 TITL 3 SAMPLES. REMARK 0 REF PROC.NATL.ACAD.SCI.USA V. 109 10873 2012 REMARK 0 REFN ISSN 0027-8424 REMARK 0 PMID 22733734 REMARK 0 DOI 10.1073/PNAS.1203013109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EVFOLD-PLM, ROSETTA, REDUCE REMARK 3 AUTHORS : BAKER, D. ET AL. (ROSETTA), RICHARDSON, J. & REMARK 3 RICHARDSON, D. (REDUCE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROTONS FROM THE ROSETTA MODELS WERE REMARK 3 REMOVED AND ADDED BACK USING REDUCE. REDCAT WAS USED TO SIMULATE REMARK 3 ONE RDC DATA SET WITH ONE ALIGNMENT TENSOR FROM THE REFERENCE REMARK 3 STRUCTURE. REMARK 4 REMARK 4 2N45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000104398. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ASDP (EC-NMR), CYANA, TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: AUTHORS USED THE CS DATA AND THE NOESY PEAK LIST DATA FROM REMARK 210 PDB ENTRY 2MV0, AND THE RDC DATA FROM PDB ENTRY 1EZP. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 132 H ASP A 136 1.58 REMARK 500 O ASP A 136 H LYS A 140 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 55 95.02 -171.30 REMARK 500 1 ALA A 63 -112.57 -104.96 REMARK 500 1 HIS A 64 -83.04 -110.74 REMARK 500 1 LEU A 89 -145.09 -105.02 REMARK 500 1 ALA A 231 28.61 49.72 REMARK 500 1 SER A 233 -99.03 33.87 REMARK 500 1 ASN A 234 39.18 -151.10 REMARK 500 1 THR A 237 82.01 -6.62 REMARK 500 1 PRO A 254 70.60 -63.94 REMARK 500 1 TYR A 283 -52.38 -120.58 REMARK 500 1 ALA A 301 72.69 43.78 REMARK 500 2 ASP A 55 95.86 -170.76 REMARK 500 2 ALA A 63 -121.11 -112.05 REMARK 500 2 HIS A 64 -79.86 -133.86 REMARK 500 2 LEU A 89 -147.35 -107.30 REMARK 500 2 ALA A 231 17.99 59.59 REMARK 500 2 SER A 233 -94.99 31.91 REMARK 500 2 ASN A 234 38.70 -151.27 REMARK 500 2 THR A 237 82.65 -7.26 REMARK 500 2 PRO A 254 74.67 -62.90 REMARK 500 2 TYR A 283 -50.34 -122.66 REMARK 500 3 ASP A 55 97.05 -172.75 REMARK 500 3 ALA A 63 -98.09 -105.08 REMARK 500 3 HIS A 64 -89.15 -127.17 REMARK 500 3 LEU A 89 -149.78 -109.41 REMARK 500 3 SER A 233 -96.34 32.32 REMARK 500 3 ASN A 234 36.29 -143.65 REMARK 500 3 THR A 237 82.18 -8.92 REMARK 500 3 LYS A 239 13.76 -153.65 REMARK 500 3 PRO A 254 68.76 -68.95 REMARK 500 3 ALA A 301 71.69 43.47 REMARK 500 4 ASP A 55 95.40 -172.50 REMARK 500 4 ALA A 63 -95.46 -113.46 REMARK 500 4 HIS A 64 -85.87 -127.05 REMARK 500 4 LEU A 89 -145.02 -108.23 REMARK 500 4 ALA A 168 -73.54 -67.94 REMARK 500 4 SER A 233 -80.79 -4.64 REMARK 500 4 ASN A 234 4.95 -171.92 REMARK 500 4 THR A 237 75.08 -6.68 REMARK 500 4 PRO A 254 74.75 -64.93 REMARK 500 4 LEU A 285 41.40 -99.94 REMARK 500 4 ALA A 301 85.26 54.97 REMARK 500 5 ASP A 55 101.87 -169.66 REMARK 500 5 ALA A 63 -100.00 -105.10 REMARK 500 5 HIS A 64 -85.90 -127.33 REMARK 500 5 SER A 233 -91.72 2.92 REMARK 500 5 ASN A 234 3.04 -153.99 REMARK 500 5 THR A 237 82.89 -9.96 REMARK 500 5 LYS A 239 -31.76 -130.23 REMARK 500 5 PRO A 254 75.20 -67.38 REMARK 500 REMARK 500 THIS ENTRY HAS 215 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 14 LYS A 15 2 148.23 REMARK 500 ASP A 14 LYS A 15 3 147.31 REMARK 500 ASP A 14 LYS A 15 4 148.21 REMARK 500 ASP A 14 LYS A 15 5 149.43 REMARK 500 ASP A 14 LYS A 15 6 148.27 REMARK 500 ASP A 14 LYS A 15 7 145.66 REMARK 500 ASP A 14 LYS A 15 8 144.35 REMARK 500 ASP A 14 LYS A 15 9 146.90 REMARK 500 ASP A 14 LYS A 15 10 147.94 REMARK 500 ASP A 14 LYS A 15 11 145.80 REMARK 500 ASP A 14 LYS A 15 12 147.52 REMARK 500 ASP A 14 LYS A 15 13 148.86 REMARK 500 ASP A 14 LYS A 15 14 147.91 REMARK 500 ASP A 14 LYS A 15 16 147.08 REMARK 500 ASP A 14 LYS A 15 17 149.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25237 RELATED DB: BMRB REMARK 900 RELATED ID: 2MV0 RELATED DB: PDB REMARK 900 RELATED ID: 1EZP RELATED DB: PDB REMARK 900 RELATED ID: 2N42 RELATED DB: PDB REMARK 900 RELATED ID: 2N44 RELATED DB: PDB REMARK 900 RELATED ID: 2N46 RELATED DB: PDB REMARK 900 RELATED ID: 2N47 RELATED DB: PDB REMARK 900 RELATED ID: 2N48 RELATED DB: PDB REMARK 900 RELATED ID: 2N49 RELATED DB: PDB REMARK 900 RELATED ID: 2N4A RELATED DB: PDB REMARK 900 RELATED ID: 2N4B RELATED DB: PDB REMARK 900 RELATED ID: 2N4C RELATED DB: PDB REMARK 900 RELATED ID: 2N4D RELATED DB: PDB REMARK 900 RELATED ID: 2N4F RELATED DB: PDB REMARK 900 RELATED ID: NESG-ER690 RELATED DB: TARGETTRACK DBREF 2N45 A 1 370 UNP P0AEX9 MALE_ECOLI 27 396 SEQRES 1 A 370 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 370 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 370 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 370 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 370 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 370 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 370 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 370 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 370 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 370 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 370 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 370 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 370 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 370 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 370 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 370 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 370 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 370 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 370 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 370 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 370 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 370 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 370 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 370 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 370 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 370 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 370 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 370 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 29 A 370 GLN THR ARG ILE THR LYS HELIX 1 1 ASN A 12 LYS A 15 5 4 HELIX 2 2 GLY A 16 GLY A 32 1 17 HELIX 3 3 LYS A 42 THR A 53 1 12 HELIX 4 4 ASP A 65 SER A 73 1 9 HELIX 5 5 ASP A 82 LEU A 89 1 8 HELIX 6 6 PRO A 91 VAL A 97 1 7 HELIX 7 7 GLU A 130 ALA A 141 1 12 HELIX 8 8 GLU A 153 ALA A 162 1 10 HELIX 9 9 ALA A 163 GLY A 165 5 3 HELIX 10 10 ASN A 185 ASN A 201 1 17 HELIX 11 11 ASP A 209 LYS A 219 1 11 HELIX 12 12 ASN A 272 LEU A 284 1 13 HELIX 13 13 THR A 286 LYS A 295 1 10 HELIX 14 14 LEU A 304 ALA A 312 1 9 HELIX 15 15 ASP A 314 GLY A 327 1 14 HELIX 16 16 GLN A 335 SER A 352 1 18 HELIX 17 17 THR A 356 LYS A 370 1 15 SHEET 1 A 4 LYS A 34 GLU A 38 0 SHEET 2 A 4 LYS A 6 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 A 4 ILE A 59 PHE A 61 1 O ILE A 59 N TRP A 10 SHEET 4 A 4 ALA A 264 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 1 B 2 ARG A 98 TYR A 99 0 SHEET 2 B 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 C 3 VAL A 110 ALA A 112 0 SHEET 2 C 3 PHE A 258 VAL A 261 -1 O GLY A 260 N GLU A 111 SHEET 3 C 3 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 D 3 MET A 224 ASN A 227 0 SHEET 2 D 3 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 3 D 3 TYR A 242 THR A 245 -1 O GLY A 243 N TYR A 117 SHEET 1 E 2 LYS A 170 GLU A 172 0 SHEET 2 E 2 LYS A 175 ASP A 177 -1 O LYS A 175 N GLU A 172 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1