HEADER LIPID BINDING PROTEIN 17-JUN-15 2N48 TITLE EC-NMR STRUCTURE OF ESCHERICHIA COLI YIAD DETERMINED BY COMBINING TITLE 2 EVOLUTIONARY COUPLINGS (EC) AND SPARSE NMR DATA. NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET ER553 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE LIPOPROTEIN YIAD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RESIDUES 59-199; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YIAD, B3552, JW5657; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P KEYWDS EC-NMR, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, PSI-BIOLOGY, STRUCTURAL GENOMICS, LIPID KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.MARKS,G.T.MONTELIONE,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 03-JUL-24 2N48 1 REMARK REVDAT 5 15-MAY-24 2N48 1 REMARK REVDAT 4 14-JUN-23 2N48 1 REMARK SEQADV REVDAT 3 12-AUG-15 2N48 1 JRNL REVDAT 2 08-JUL-15 2N48 1 JRNL REVDAT 1 01-JUL-15 2N48 0 JRNL AUTH Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.S.MARKS,G.T.MONTELIONE JRNL TITL PROTEIN STRUCTURE DETERMINATION BY COMBINING SPARSE NMR DATA JRNL TITL 2 WITH EVOLUTIONARY COUPLINGS. JRNL REF NAT.METHODS V. 12 751 2015 JRNL REFN ISSN 1548-7091 JRNL PMID 26121406 JRNL DOI 10.1038/NMETH.3455 REMARK 0 REMARK 0 THIS ENTRY 2N48 REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA IN 2K1S DETERMINED BY AUTHORS: T.A.RAMELOT, REMARK 0 L.ZHAO,K.HAMILTON,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, REMARK 0 T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL REMARK 0 GENOMICS CONSORTIUM (NESG) REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ROSETTA, REDUCE REMARK 3 AUTHORS : D. BAKER (ROSETTA), J. RICHARDSON AND D. REMARK 3 RICHARDSON (REDUCE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROTONS FROM THE ROSETTA MODELS WERE REMARK 3 REMOVED AND ADDED BACK USING REDUCE. REMARK 4 REMARK 4 2N48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000104401. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : EVFOLD-PLM, ASDP, CYANA, EC-NMR, REMARK 210 TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: AUTHOR USED THE EXPERIMENTAL DATA FROM ENTRY 2K1S. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 33 HG1 THR A 37 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 116 -45.22 -144.96 REMARK 500 1 LEU A 141 129.68 -171.06 REMARK 500 2 ALA A 43 65.44 -68.92 REMARK 500 2 ALA A 116 -65.53 -136.43 REMARK 500 3 THR A 74 145.88 -170.71 REMARK 500 3 THR A 77 43.88 -88.41 REMARK 500 3 ALA A 116 -65.05 -134.94 REMARK 500 4 ASP A 75 -62.57 -104.97 REMARK 500 4 THR A 77 40.99 -90.13 REMARK 500 4 HIS A 145 -55.24 -127.20 REMARK 500 5 THR A 77 41.72 -92.21 REMARK 500 5 ALA A 116 -64.77 -134.97 REMARK 500 5 HIS A 145 -46.02 -133.54 REMARK 500 6 PRO A 64 -178.15 -69.50 REMARK 500 6 THR A 77 40.52 -94.84 REMARK 500 6 ALA A 116 -64.23 -135.00 REMARK 500 6 HIS A 145 -54.93 -121.52 REMARK 500 7 LYS A 65 32.94 71.80 REMARK 500 7 THR A 74 149.62 -171.05 REMARK 500 7 SER A 76 34.25 -88.36 REMARK 500 7 ALA A 116 -58.50 -129.83 REMARK 500 8 LYS A 65 34.69 72.33 REMARK 500 8 THR A 74 148.54 -171.40 REMARK 500 8 THR A 77 41.02 -109.71 REMARK 500 8 ALA A 116 -64.94 -134.98 REMARK 500 8 HIS A 145 -44.70 -134.93 REMARK 500 9 ASP A 75 -63.80 -104.76 REMARK 500 9 THR A 77 41.17 -88.80 REMARK 500 9 ALA A 116 -65.01 -134.80 REMARK 500 11 ALA A 116 -45.07 -145.26 REMARK 500 11 LEU A 142 54.73 -95.97 REMARK 500 11 GLU A 143 130.09 -170.07 REMARK 500 12 ALA A 43 63.63 -68.51 REMARK 500 12 ALA A 116 -67.41 -135.08 REMARK 500 12 HIS A 146 113.70 -164.91 REMARK 500 12 HIS A 147 114.99 -165.04 REMARK 500 13 ALA A 43 60.00 -68.79 REMARK 500 13 ALA A 116 -67.37 -134.96 REMARK 500 13 HIS A 146 115.00 -165.00 REMARK 500 13 HIS A 148 -35.02 -139.99 REMARK 500 14 SER A 76 -60.55 -91.25 REMARK 500 14 ALA A 116 -68.57 -134.98 REMARK 500 14 HIS A 146 115.01 -164.97 REMARK 500 14 HIS A 148 -40.00 -130.90 REMARK 500 15 ALA A 116 -65.26 -135.02 REMARK 500 15 HIS A 147 114.90 -165.06 REMARK 500 16 SER A 76 -60.35 -91.13 REMARK 500 16 ALA A 116 -70.09 -134.78 REMARK 500 16 HIS A 146 114.93 -165.04 REMARK 500 17 ALA A 116 -67.90 -134.94 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K1S RELATED DB: PDB REMARK 900 RELATED ID: 15683 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-ER553 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 2N42 RELATED DB: PDB REMARK 900 RELATED ID: 2N44 RELATED DB: PDB REMARK 900 RELATED ID: 2N45 RELATED DB: PDB REMARK 900 RELATED ID: 2N46 RELATED DB: PDB REMARK 900 RELATED ID: 2N47 RELATED DB: PDB REMARK 900 RELATED ID: 2N49 RELATED DB: PDB REMARK 900 RELATED ID: 2N4A RELATED DB: PDB REMARK 900 RELATED ID: 2N4B RELATED DB: PDB REMARK 900 RELATED ID: 2N4C RELATED DB: PDB REMARK 900 RELATED ID: 2N4D RELATED DB: PDB REMARK 900 RELATED ID: 2N4F RELATED DB: PDB REMARK 900 RELATED ID: 15638 RELATED DB: BMRB DBREF 2N48 A 1 141 UNP P37665 YIAD_ECOLI 79 219 SEQADV 2N48 LEU A 142 UNP P37665 EXPRESSION TAG SEQADV 2N48 GLU A 143 UNP P37665 EXPRESSION TAG SEQADV 2N48 HIS A 144 UNP P37665 EXPRESSION TAG SEQADV 2N48 HIS A 145 UNP P37665 EXPRESSION TAG SEQADV 2N48 HIS A 146 UNP P37665 EXPRESSION TAG SEQADV 2N48 HIS A 147 UNP P37665 EXPRESSION TAG SEQADV 2N48 HIS A 148 UNP P37665 EXPRESSION TAG SEQADV 2N48 HIS A 149 UNP P37665 EXPRESSION TAG SEQRES 1 A 149 TYR TYR MET ASP VAL GLN GLU ALA LYS LEU ARG ASP LYS SEQRES 2 A 149 MET ARG GLY THR GLY VAL SER VAL THR ARG SER GLY ASP SEQRES 3 A 149 ASN ILE ILE LEU ASN MET PRO ASN ASN VAL THR PHE ASP SEQRES 4 A 149 SER SER SER ALA THR LEU LYS PRO ALA GLY ALA ASN THR SEQRES 5 A 149 LEU THR GLY VAL ALA MET VAL LEU LYS GLU TYR PRO LYS SEQRES 6 A 149 THR ALA VAL ASN VAL ILE GLY TYR THR ASP SER THR GLY SEQRES 7 A 149 GLY HIS ASP LEU ASN MET ARG LEU SER GLN GLN ARG ALA SEQRES 8 A 149 ASP SER VAL ALA SER ALA LEU ILE THR GLN GLY VAL ASP SEQRES 9 A 149 ALA SER ARG ILE ARG THR GLN GLY LEU GLY PRO ALA ASN SEQRES 10 A 149 PRO ILE ALA SER ASN SER THR ALA GLU GLY LYS ALA GLN SEQRES 11 A 149 ASN ARG ARG VAL GLU ILE THR LEU SER PRO LEU LEU GLU SEQRES 12 A 149 HIS HIS HIS HIS HIS HIS HELIX 1 1 TYR A 1 MET A 14 1 14 HELIX 2 2 ASN A 34 PHE A 38 1 5 HELIX 3 3 LYS A 46 TYR A 63 1 18 HELIX 4 4 GLY A 79 GLN A 101 1 23 HELIX 5 5 ASP A 104 SER A 106 5 3 HELIX 6 6 THR A 124 ARG A 132 1 9 SHEET 1 A 5 SER A 20 SER A 24 0 SHEET 2 A 5 ASN A 27 PRO A 33 -1 O ASN A 31 N SER A 20 SHEET 3 A 5 ARG A 133 PRO A 140 -1 O LEU A 138 N ILE A 28 SHEET 4 A 5 THR A 66 TYR A 73 -1 N ASN A 69 O THR A 137 SHEET 5 A 5 ILE A 108 GLY A 112 1 O ARG A 109 N VAL A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1