HEADER DNA BINDING PROTEIN 26-JUN-15 2N4P TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF TDP-43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN 43; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-77; COMPND 5 SYNONYM: TDP-43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TARDBP, TDP43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PQE30-6XHIS KEYWDS DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.MOMPEAN,V.ROMANO,D.PANTOJA-UCEDA,C.STUANI,F.BARALLE,E.BURATTI, AUTHOR 2 D.V.LAURENTS REVDAT 5 15-MAY-24 2N4P 1 REMARK REVDAT 4 14-JUN-23 2N4P 1 REMARK SEQADV REVDAT 3 01-JUN-16 2N4P 1 JRNL REVDAT 2 25-MAY-16 2N4P 1 JRNL REVDAT 1 20-JAN-16 2N4P 0 JRNL AUTH M.MOMPEAN,V.ROMANO,D.PANTOJA-UCEDA,C.STUANI,F.E.BARALLE, JRNL AUTH 2 E.BURATTI,D.V.LAURENTS JRNL TITL THE TDP-43 N-TERMINAL DOMAIN STRUCTURE AT HIGH RESOLUTION. JRNL REF FEBS J. V. 283 1242 2016 JRNL REFN ISSN 1742-464X JRNL PMID 26756435 JRNL DOI 10.1111/FEBS.13651 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000104418. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-0.7 MM [U-13C; U-15N] NTD, REMARK 210 TCEP, CD3COOD/ CD3COO-NA+, NAN3, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 2D 1H-1H REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AMBER REMARK 210 METHOD USED : ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 50 99.27 -67.73 REMARK 500 1 MET A 63 27.28 -142.28 REMARK 500 1 ARG A 64 177.03 -56.07 REMARK 500 1 PRO A 76 -172.59 -69.99 REMARK 500 2 MET A 13 171.40 -57.93 REMARK 500 2 ARG A 64 176.50 -59.34 REMARK 500 2 PRO A 76 -172.94 -69.89 REMARK 500 3 PRO A 76 -173.09 -69.94 REMARK 500 4 PRO A 76 -172.79 -69.88 REMARK 500 5 ALA A 2 106.14 -172.31 REMARK 500 5 MET A 63 38.41 -145.17 REMARK 500 5 ARG A 64 -178.97 -61.10 REMARK 500 5 PRO A 76 -172.92 -69.92 REMARK 500 6 CYS A 62 49.77 32.87 REMARK 500 7 ARG A 64 179.51 -57.32 REMARK 500 7 PRO A 76 -171.85 -69.95 REMARK 500 8 SER A 4 -48.50 -158.64 REMARK 500 8 HIS A 6 93.89 57.28 REMARK 500 8 SER A 12 121.69 -174.80 REMARK 500 8 ASP A 25 -170.57 -65.02 REMARK 500 8 PHE A 47 74.93 -119.20 REMARK 500 8 ASN A 57 148.51 -177.99 REMARK 500 8 ARG A 64 173.42 -55.01 REMARK 500 8 PRO A 76 -170.92 -69.94 REMARK 500 8 ALA A 78 -40.99 -173.79 REMARK 500 8 TRP A 80 -74.96 -76.09 REMARK 500 9 ARG A 64 -174.61 -60.40 REMARK 500 9 PRO A 76 -172.26 -69.84 REMARK 500 10 GLU A 33 -179.32 -67.62 REMARK 500 10 THR A 37 -173.19 -61.78 REMARK 500 10 ARG A 64 -174.33 -62.55 REMARK 500 11 ARG A 64 179.28 -58.06 REMARK 500 11 PRO A 76 -173.12 -69.92 REMARK 500 12 ALA A 2 176.74 -56.79 REMARK 500 12 PRO A 76 -172.88 -70.00 REMARK 500 13 ALA A 50 98.11 -67.95 REMARK 500 13 PRO A 76 -173.43 -69.98 REMARK 500 14 MET A 63 37.27 -144.91 REMARK 500 15 THR A 37 -176.24 -64.66 REMARK 500 16 ALA A 2 -64.23 -101.70 REMARK 500 16 MET A 63 38.66 -150.82 REMARK 500 16 PRO A 76 -173.82 -69.94 REMARK 500 18 ARG A 64 -178.78 -61.44 REMARK 500 18 PRO A 76 -173.33 -69.96 REMARK 500 20 ALA A 2 148.96 -172.98 REMARK 500 20 MET A 63 32.26 -143.67 REMARK 500 20 ARG A 64 -174.56 -64.40 REMARK 500 20 GLU A 70 29.95 45.90 REMARK 500 20 PRO A 76 -173.67 -69.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25675 RELATED DB: BMRB DBREF 2N4P A 13 89 UNP Q13148 TADBP_HUMAN 1 77 SEQADV 2N4P MET A 1 UNP Q13148 EXPRESSION TAG SEQADV 2N4P ALA A 2 UNP Q13148 EXPRESSION TAG SEQADV 2N4P GLY A 3 UNP Q13148 EXPRESSION TAG SEQADV 2N4P SER A 4 UNP Q13148 EXPRESSION TAG SEQADV 2N4P HIS A 5 UNP Q13148 EXPRESSION TAG SEQADV 2N4P HIS A 6 UNP Q13148 EXPRESSION TAG SEQADV 2N4P HIS A 7 UNP Q13148 EXPRESSION TAG SEQADV 2N4P HIS A 8 UNP Q13148 EXPRESSION TAG SEQADV 2N4P HIS A 9 UNP Q13148 EXPRESSION TAG SEQADV 2N4P HIS A 10 UNP Q13148 EXPRESSION TAG SEQADV 2N4P GLY A 11 UNP Q13148 EXPRESSION TAG SEQADV 2N4P SER A 12 UNP Q13148 EXPRESSION TAG SEQRES 1 A 89 MET ALA GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 89 SER GLU TYR ILE ARG VAL THR GLU ASP GLU ASN ASP GLU SEQRES 3 A 89 PRO ILE GLU ILE PRO SER GLU ASP ASP GLY THR VAL LEU SEQRES 4 A 89 LEU SER THR VAL THR ALA GLN PHE PRO GLY ALA CYS GLY SEQRES 5 A 89 LEU ARG TYR ARG ASN PRO VAL SER GLN CYS MET ARG GLY SEQRES 6 A 89 VAL ARG LEU VAL GLU GLY ILE LEU HIS ALA PRO ASP ALA SEQRES 7 A 89 GLY TRP GLY ASN LEU VAL TYR VAL VAL ASN TYR HELIX 1 1 LEU A 39 PHE A 47 1 9 SHEET 1 A 2 ILE A 17 VAL A 19 0 SHEET 2 A 2 ILE A 28 ILE A 30 -1 O ILE A 30 N ILE A 17 SHEET 1 B 2 GLY A 52 ARG A 56 0 SHEET 2 B 2 VAL A 84 ASN A 88 -1 O ASN A 88 N GLY A 52 SHEET 1 C 2 ARG A 67 VAL A 69 0 SHEET 2 C 2 ILE A 72 HIS A 74 -1 O HIS A 74 N ARG A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1