HEADER MEMBRANE PROTEIN 01-JUL-15 2N4X TITLE STRUCTURE OF THE TRANSMEMBRANE ELECTRON TRANSPORTER CCDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-TYPE BIOGENESIS PROTEIN (CCDA); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: AF_1057; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SEN212; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PSC124 KEYWDS TRANSMEMBRANE ELECTRON TRANSPORTER, TRANSMEMBRANE REDUCTASE, CCDA, KEYWDS 2 DSBD HOMOLOG, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.J.CHOU,J.A.WILLIAMSON REVDAT 3 15-MAY-24 2N4X 1 REMARK REVDAT 2 14-JUN-23 2N4X 1 REMARK SEQADV REVDAT 1 18-MAY-16 2N4X 0 JRNL AUTH J.A.WILLIAMSON,S.H.CHO,J.YE,J.F.COLLET,J.R.BECKWITH,J.J.CHOU JRNL TITL STRUCTURE AND MULTISTATE FUNCTION OF THE TRANSMEMBRANE JRNL TITL 2 ELECTRON TRANSPORTER CCDA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 809 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 26389738 JRNL DOI 10.1038/NSMB.3099 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.38, X-PLOR NIH 2.38 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104426. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N; REMARK 210 U-80% 2H] CCDA-1, 20 MM MES-2, REMARK 210 50 MM SODIUM CHLORIDE-3, 100 MM REMARK 210 DODECYLPHOSPHOCHOLINE-4, 95% H2O/ REMARK 210 5% D2O; 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] CCDA-5, 20 MM MES-6, REMARK 210 50 MM SODIUM CHLORIDE-7, 100 MM REMARK 210 [U-99% 2H] DODECYLPHOSPHOCHOLINE- REMARK 210 8, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY-HSQC; 3D TROSY REMARK 210 HNCA; 3D TROSY HN(CO)CA; 3D REMARK 210 TROSY HN(CA)CO; 3D TROSY HNCO; REMARK 210 3D TROSY HNCACB; 3D 15N-EDITED REMARK 210 NOESY TROSY-HSQC (60 MS MIX TIME) REMARK 210 ; 3D 15N-EDITED NOESY TROSY-HSQC REMARK 210 (120 MS MIX TIME); 3D 13C-EDITED REMARK 210 METHYL NOESY (150 MS MIX TIME); REMARK 210 4D DOUBLE 15N-EDITED NOESY (200 REMARK 210 MS MIX TIME) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TOPSPIN 3.0, CCPNMR, REMARK 210 XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 75 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 THR A -7 REMARK 465 SER A -6 REMARK 465 GLN A -5 REMARK 465 GLU A -4 REMARK 465 GLN A -3 REMARK 465 PRO A -2 REMARK 465 THR A -1 REMARK 465 ALA A 0 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 -8.87 -159.34 REMARK 500 1 PHE A 13 -70.39 -44.96 REMARK 500 1 SER A 14 100.43 -38.31 REMARK 500 1 PRO A 15 -77.10 -51.45 REMARK 500 1 ALA A 16 -155.13 83.41 REMARK 500 1 VAL A 20 26.12 40.57 REMARK 500 1 PRO A 22 88.40 -33.75 REMARK 500 1 LEU A 23 -54.77 -138.21 REMARK 500 1 PHE A 25 14.00 48.54 REMARK 500 1 ALA A 26 -135.58 -93.25 REMARK 500 1 SER A 28 58.17 -167.18 REMARK 500 1 TYR A 51 -81.23 -114.58 REMARK 500 1 THR A 52 79.45 -171.12 REMARK 500 1 ALA A 53 -98.95 -42.07 REMARK 500 1 LEU A 55 53.79 -173.06 REMARK 500 1 PHE A 56 -99.47 -145.45 REMARK 500 1 PHE A 57 50.65 -155.34 REMARK 500 1 ASP A 78 150.52 -30.56 REMARK 500 1 LEU A 80 147.05 57.93 REMARK 500 1 ASP A 81 -172.52 -176.36 REMARK 500 1 GLU A 82 -97.44 -78.90 REMARK 500 1 LYS A 83 -33.16 -33.37 REMARK 500 1 SER A 96 -67.87 -145.38 REMARK 500 1 LYS A 98 -70.48 -156.24 REMARK 500 1 GLN A 100 63.23 -173.11 REMARK 500 1 SER A 104 -128.49 -170.88 REMARK 500 1 PHE A 105 44.32 -94.42 REMARK 500 1 ALA A 118 -142.93 -62.09 REMARK 500 1 ILE A 119 -81.18 89.57 REMARK 500 1 LEU A 131 52.59 -109.94 REMARK 500 1 LEU A 132 120.41 -173.16 REMARK 500 1 SER A 133 -159.50 37.73 REMARK 500 1 ASN A 135 71.17 -177.32 REMARK 500 1 LYS A 159 123.77 170.18 REMARK 500 1 PHE A 160 -167.90 -54.35 REMARK 500 1 ALA A 163 44.59 168.53 REMARK 500 1 ASN A 164 112.05 -35.55 REMARK 500 1 ALA A 184 103.25 -35.22 REMARK 500 1 LEU A 185 38.76 -68.05 REMARK 500 1 GLU A 187 -144.17 66.59 REMARK 500 1 VAL A 188 5.80 49.50 REMARK 500 1 LEU A 189 -77.43 -100.43 REMARK 500 1 LEU A 190 -79.74 55.50 REMARK 500 2 LEU A 2 -149.47 46.90 REMARK 500 2 MET A 3 -45.35 70.53 REMARK 500 2 ALA A 16 -117.38 -139.47 REMARK 500 2 VAL A 17 -166.53 -56.77 REMARK 500 2 VAL A 20 121.41 45.04 REMARK 500 2 VAL A 21 -40.07 118.16 REMARK 500 2 LEU A 23 -3.99 -164.43 REMARK 500 REMARK 500 THIS ENTRY HAS 585 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25685 RELATED DB: BMRB DBREF 2N4X A 2 190 UNP O29205 O29205_ARCFU 2 190 SEQADV 2N4X GLY A -9 UNP O29205 EXPRESSION TAG SEQADV 2N4X SER A -8 UNP O29205 EXPRESSION TAG SEQADV 2N4X THR A -7 UNP O29205 EXPRESSION TAG SEQADV 2N4X SER A -6 UNP O29205 EXPRESSION TAG SEQADV 2N4X GLN A -5 UNP O29205 EXPRESSION TAG SEQADV 2N4X GLU A -4 UNP O29205 EXPRESSION TAG SEQADV 2N4X GLN A -3 UNP O29205 EXPRESSION TAG SEQADV 2N4X PRO A -2 UNP O29205 EXPRESSION TAG SEQADV 2N4X THR A -1 UNP O29205 EXPRESSION TAG SEQADV 2N4X ALA A 0 UNP O29205 EXPRESSION TAG SEQADV 2N4X GLN A 1 UNP O29205 EXPRESSION TAG SEQADV 2N4X ALA A 16 UNP O29205 CYS 16 ENGINEERED MUTATION SEQADV 2N4X ALA A 118 UNP O29205 CYS 118 ENGINEERED MUTATION SEQADV 2N4X LEU A 191 UNP O29205 EXPRESSION TAG SEQADV 2N4X GLU A 192 UNP O29205 EXPRESSION TAG SEQADV 2N4X HIS A 193 UNP O29205 EXPRESSION TAG SEQADV 2N4X HIS A 194 UNP O29205 EXPRESSION TAG SEQADV 2N4X HIS A 195 UNP O29205 EXPRESSION TAG SEQADV 2N4X HIS A 196 UNP O29205 EXPRESSION TAG SEQADV 2N4X HIS A 197 UNP O29205 EXPRESSION TAG SEQADV 2N4X HIS A 198 UNP O29205 EXPRESSION TAG SEQRES 1 A 208 GLY SER THR SER GLN GLU GLN PRO THR ALA GLN LEU MET SEQRES 2 A 208 ALA PHE ALA LEU GLY ILE LEU SER VAL PHE SER PRO ALA SEQRES 3 A 208 VAL LEU PRO VAL VAL PRO LEU ILE PHE ALA GLY SER ARG SEQRES 4 A 208 GLY ARG ALA LEU ASP ALA PHE LEU ILE VAL ALA GLY LEU SEQRES 5 A 208 THR ILE SER MET LEU ILE LEU GLY TYR THR ALA SER LEU SEQRES 6 A 208 PHE PHE GLY PHE PHE ARG VAL VAL ALA MET LEU PHE LEU SEQRES 7 A 208 LEU ILE PHE ALA LEU ILE LEU LEU SER ASP GLU LEU ASP SEQRES 8 A 208 GLU LYS VAL SER ILE PHE ALA SER ARG MET THR SER GLY SEQRES 9 A 208 LEU SER TRP LYS ILE GLN THR LEU PRO SER PHE PHE PHE SEQRES 10 A 208 GLY MET LEU LEU ALA PHE LEU TRP LEU PRO ALA ILE LEU SEQRES 11 A 208 PRO PHE ALA GLY ILE ALA ILE SER GLN THR LEU LEU SER SEQRES 12 A 208 GLU ASN PRO LEU VAL MET LEU SER TYR GLY LEU GLY MET SEQRES 13 A 208 ALA VAL THR ILE ALA ALA VAL PHE LYS MET GLY GLU LYS SEQRES 14 A 208 PHE VAL LYS ALA ASN PHE GLN LEU ILE ARG LYS VAL THR SEQRES 15 A 208 GLY ALA ILE VAL LEU LEU TYR LEU ALA TYR PHE ALA LEU SEQRES 16 A 208 THR GLU VAL LEU LEU LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 MET A 3 SER A 14 1 12 HELIX 2 2 ARG A 29 GLY A 50 1 22 HELIX 3 3 PHE A 57 ASP A 78 1 22 HELIX 4 4 ASP A 81 LEU A 95 1 15 HELIX 5 5 PHE A 106 TRP A 115 1 10 HELIX 6 6 ILE A 119 LEU A 131 1 13 HELIX 7 7 ASN A 135 LYS A 155 1 21 HELIX 8 8 MET A 156 GLU A 158 5 3 HELIX 9 9 ASN A 164 ALA A 184 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1