HEADER TRANSLATION 02-JUL-15 2N51 TITLE NMR STRUCTURE OF THE C-TERMINAL REGION OF HUMAN EUKARYOTIC ELONGATION TITLE 2 FACTOR 1B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR 1-DELTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 153-281; COMPND 5 SYNONYM: EF-1-DELTA, ANTIGEN NY-CO-4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EEF1D, EF1D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.WU,Y.FENG REVDAT 2 14-JUN-23 2N51 1 REMARK SEQADV REVDAT 1 18-MAY-16 2N51 0 JRNL AUTH H.WU,C.WANG,W.GONG,J.WANG,J.XUAN,S.PERRETT,Y.FENG JRNL TITL THE C-TERMINAL REGION OF HUMAN EUKARYOTIC ELONGATION FACTOR JRNL TITL 2 1B DELTA. JRNL REF J.BIOMOL.NMR V. 64 181 2016 JRNL REFN ISSN 0925-2738 JRNL PMID 26762120 JRNL DOI 10.1007/S10858-016-0012-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104430. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 220 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-13C; U-15N] ENTITY-1, REMARK 210 20 MM TRIS-2, 200 MM SODIUM REMARK 210 CHLORIDE-3, 0.01 % W/V DSS-4, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HBHANH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 3D CCH-COSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRPIPE, NMRVIEW, SANE, REMARK 210 CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 153 -35.96 76.34 REMARK 500 1 ASP A 155 -43.04 -131.39 REMARK 500 1 ASP A 156 -1.23 -162.73 REMARK 500 1 GLU A 165 -81.39 61.38 REMARK 500 1 GLU A 166 142.79 73.52 REMARK 500 1 LYS A 186 -167.85 -118.74 REMARK 500 1 ALA A 187 -0.02 68.92 REMARK 500 1 LYS A 253 -55.19 -128.25 REMARK 500 1 GLU A 267 -6.43 -51.24 REMARK 500 2 ASP A 154 -19.54 72.12 REMARK 500 2 ASP A 163 75.37 -154.76 REMARK 500 2 ASN A 164 74.61 45.79 REMARK 500 2 ASP A 168 -40.09 -148.49 REMARK 500 2 ALA A 191 -69.41 -176.05 REMARK 500 2 GLU A 267 -6.35 -57.49 REMARK 500 2 ALA A 277 144.21 -171.40 REMARK 500 3 SER A 152 56.39 -101.12 REMARK 500 3 ASP A 154 -70.27 69.41 REMARK 500 3 ASP A 158 106.13 -56.74 REMARK 500 3 LEU A 159 -1.16 65.07 REMARK 500 3 PHE A 160 -67.70 66.51 REMARK 500 3 ASP A 168 120.99 79.66 REMARK 500 3 LYS A 189 70.26 55.59 REMARK 500 3 ALA A 191 94.10 67.16 REMARK 500 3 LYS A 253 -53.05 -124.18 REMARK 500 3 GLU A 267 -5.74 -52.41 REMARK 500 3 ALA A 277 140.72 -175.70 REMARK 500 4 GLU A 153 -159.84 -121.32 REMARK 500 4 LEU A 159 -54.24 -133.21 REMARK 500 4 SER A 162 -41.23 -173.32 REMARK 500 4 GLU A 167 -72.38 70.48 REMARK 500 4 LYS A 186 -51.45 75.40 REMARK 500 4 PRO A 190 84.91 -69.33 REMARK 500 4 LEU A 192 -169.07 64.89 REMARK 500 4 LYS A 253 -51.44 -124.24 REMARK 500 4 GLU A 267 -6.57 -54.61 REMARK 500 5 LEU A 159 -78.86 -102.70 REMARK 500 5 PHE A 160 -163.23 56.89 REMARK 500 5 ASN A 164 -45.61 -160.73 REMARK 500 5 ALA A 187 93.19 -58.19 REMARK 500 5 LYS A 189 86.73 60.15 REMARK 500 5 VAL A 236 -39.88 -132.35 REMARK 500 5 GLU A 267 -7.31 -50.49 REMARK 500 6 ILE A 157 99.43 -58.29 REMARK 500 6 LEU A 159 -170.40 64.03 REMARK 500 6 PHE A 160 -69.77 70.69 REMARK 500 6 ASP A 163 45.23 -100.86 REMARK 500 6 GLU A 167 16.01 -146.05 REMARK 500 6 ASP A 168 7.99 -168.09 REMARK 500 6 GLU A 267 -5.86 -47.78 REMARK 500 REMARK 500 THIS ENTRY HAS 159 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 16 ARG A 241 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25690 RELATED DB: BMRB DBREF 2N51 A 153 281 UNP P29692 EF1D_HUMAN 153 281 SEQADV 2N51 GLY A 149 UNP P29692 EXPRESSION TAG SEQADV 2N51 PRO A 150 UNP P29692 EXPRESSION TAG SEQADV 2N51 GLY A 151 UNP P29692 EXPRESSION TAG SEQADV 2N51 SER A 152 UNP P29692 EXPRESSION TAG SEQRES 1 A 133 GLY PRO GLY SER GLU ASP ASP ASP ILE ASP LEU PHE GLY SEQRES 2 A 133 SER ASP ASN GLU GLU GLU ASP LYS GLU ALA ALA GLN LEU SEQRES 3 A 133 ARG GLU GLU ARG LEU ARG GLN TYR ALA GLU LYS LYS ALA SEQRES 4 A 133 LYS LYS PRO ALA LEU VAL ALA LYS SER SER ILE LEU LEU SEQRES 5 A 133 ASP VAL LYS PRO TRP ASP ASP GLU THR ASP MET ALA GLN SEQRES 6 A 133 LEU GLU ALA CYS VAL ARG SER ILE GLN LEU ASP GLY LEU SEQRES 7 A 133 VAL TRP GLY ALA SER LYS LEU VAL PRO VAL GLY TYR GLY SEQRES 8 A 133 ILE ARG LYS LEU GLN ILE GLN CYS VAL VAL GLU ASP ASP SEQRES 9 A 133 LYS VAL GLY THR ASP LEU LEU GLU GLU GLU ILE THR LYS SEQRES 10 A 133 PHE GLU GLU HIS VAL GLN SER VAL ASP ILE ALA ALA PHE SEQRES 11 A 133 ASN LYS ILE HELIX 1 1 ASP A 168 LYS A 186 1 19 HELIX 2 2 ASP A 210 SER A 220 1 11 HELIX 3 3 GLY A 255 PHE A 266 1 12 SHEET 1 A 4 LEU A 226 PRO A 235 0 SHEET 2 A 4 ARG A 241 GLU A 250 -1 O LYS A 242 N VAL A 234 SHEET 3 A 4 LYS A 195 PRO A 204 -1 N VAL A 202 O LEU A 243 SHEET 4 A 4 VAL A 270 LYS A 280 -1 O ASN A 279 N SER A 197 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1