data_2N5C # _entry.id 2N5C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104441 RCSB ? ? 2N5C PDB pdb_00002n5c 10.2210/pdb2n5c/pdb 25704 BMRB ? 10.13018/BMR25704 D_1000104441 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-07 2 'Structure model' 1 1 2015-10-28 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_conn 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_entry_details 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N5C _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-07-14 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_id 25704 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Elsayed, S.S.' 1 'Trusch, F.' 2 'Deng, H.' 3 'Raab, A.' 4 'Prokes, I.' 5 'Busarakam, K.' 6 'Asenjo, J.A.' 7 'Andrews, B.A.' 8 'van West, P.' 9 'Bull, A.T.' 10 'Goodfellow, M.' 11 'Yi, Y.' 12 'Ebel, R.' 13 'Jaspars, M.' 14 'Rateb, M.E.' 15 # _citation.id primary _citation.title 'Chaxapeptin, a Lasso Peptide from Extremotolerant Streptomyces leeuwenhoekii Strain C58 from the Hyperarid Atacama Desert.' _citation.journal_abbrev J.Org.Chem. _citation.journal_volume 80 _citation.page_first 10252 _citation.page_last 10260 _citation.year 2015 _citation.journal_id_ASTM JOCEAH _citation.country US _citation.journal_id_ISSN 0022-3263 _citation.journal_id_CSD 0035 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26402731 _citation.pdbx_database_id_DOI 10.1021/acs.joc.5b01878 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Elsayed, S.S.' 1 ? primary 'Trusch, F.' 2 ? primary 'Deng, H.' 3 ? primary 'Raab, A.' 4 ? primary 'Prokes, I.' 5 ? primary 'Busarakam, K.' 6 ? primary 'Asenjo, J.A.' 7 ? primary 'Andrews, B.A.' 8 ? primary 'van West, P.' 9 ? primary 'Bull, A.T.' 10 ? primary 'Goodfellow, M.' 11 ? primary 'Yi, Y.' 12 ? primary 'Ebel, R.' 13 ? primary 'Jaspars, M.' 14 ? primary 'Rateb, M.E.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description chaxapeptin _entity.formula_weight 1633.822 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GFGSKPLDSFGLNFF _entity_poly.pdbx_seq_one_letter_code_can GFGSKPLDSFGLNFF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 LYS n 1 6 PRO n 1 7 LEU n 1 8 ASP n 1 9 SER n 1 10 PHE n 1 11 GLY n 1 12 LEU n 1 13 ASN n 1 14 PHE n 1 15 PHE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces leeuwenhoekii' _entity_src_nat.pdbx_ncbi_taxonomy_id 1437453 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain C58 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'Isolate from hyper-arid Atacama Desert' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 PHE 15 15 15 PHE PHE A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N5C _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N5C _struct.title 'Solution NMR structure of the lasso peptide chaxapeptin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N5C _struct_keywords.pdbx_keywords 'CELL INVASION' _struct_keywords.text 'chaxapeptin, RiPPs, genome mining, Atacama Desert, Streptomyces, cell invasion' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N5C _struct_ref.pdbx_db_accession 2N5C _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N5C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2N5C _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id ASP _struct_conn.ptnr2_label_seq_id 8 _struct_conn.ptnr2_label_atom_id CG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ASP _struct_conn.ptnr2_auth_seq_id 8 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.334 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id GLY _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id ASP _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 8 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id GLY _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id ASP _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 8 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom N _pdbx_modification_feature.modified_residue_id_linking_atom CG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Isopeptide bond' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 7 ? ASP A 8 ? LEU A 7 ASP A 8 A 2 GLY A 11 ? LEU A 12 ? GLY A 11 LEU A 12 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ASP _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 8 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 8 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLY _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 11 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 11 # _pdbx_entry_details.entry_id 2N5C _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A GLY 1 ? ? CA A GLY 1 ? ? C A GLY 1 ? ? 97.05 113.10 -16.05 2.50 N 2 1 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 124.40 118.30 6.10 0.90 N 3 2 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 124.19 118.30 5.89 0.90 N 4 4 N A GLY 1 ? ? CA A GLY 1 ? ? C A GLY 1 ? ? 97.13 113.10 -15.97 2.50 N 5 4 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 124.83 118.30 6.53 0.90 N 6 5 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 124.07 118.30 5.77 0.90 N 7 6 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 123.79 118.30 5.49 0.90 N 8 7 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 126.54 118.30 8.24 0.90 N 9 12 N A GLY 1 ? ? CA A GLY 1 ? ? C A GLY 1 ? ? 96.26 113.10 -16.84 2.50 N 10 12 CB A ASP 8 ? ? CG A ASP 8 ? ? OD1 A ASP 8 ? ? 124.86 118.30 6.56 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 6 ? ? -69.61 -162.26 2 2 PRO A 6 ? ? -66.03 -176.56 3 3 LYS A 5 ? ? -175.36 -179.64 4 3 PRO A 6 ? ? -68.62 -170.69 5 4 PRO A 6 ? ? -68.69 -164.16 6 5 PRO A 6 ? ? -68.82 -164.61 7 6 PRO A 6 ? ? -68.20 -173.48 8 7 LEU A 7 ? ? 68.45 111.73 9 8 LEU A 7 ? ? 40.68 74.04 10 9 ASP A 8 ? ? -78.88 -164.11 11 10 PRO A 6 ? ? -64.31 -172.23 12 10 ASP A 8 ? ? -100.73 -165.75 13 11 PRO A 6 ? ? -64.93 -167.92 14 11 ASP A 8 ? ? -107.59 -169.34 15 12 PRO A 6 ? ? -68.61 -173.20 16 13 PRO A 6 ? ? -69.76 -163.00 17 14 PRO A 6 ? ? -71.04 -157.74 18 15 PRO A 6 ? ? -71.00 -158.58 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 PRO A 6 ? ? LEU A 7 ? ? -147.85 2 9 PRO A 6 ? ? LEU A 7 ? ? -149.81 3 11 GLY A 1 ? ? PHE A 2 ? ? 140.99 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 2 ASP A 8 ? ? -10.00 2 3 ASP A 8 ? ? -13.58 3 6 ASP A 8 ? ? -13.28 4 8 ASP A 8 ? ? -12.34 5 9 ASP A 8 ? ? -13.29 6 10 ASP A 8 ? ? -13.95 7 11 ASP A 8 ? ? -12.73 8 14 ASP A 8 ? ? -11.53 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N5C _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N5C _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '4 mM chaxapeptin, 100% DMSO' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '100% DMSO' # _pdbx_nmr_exptl_sample.component chaxapeptin-1 _pdbx_nmr_exptl_sample.concentration 4 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '1D 1H' 1 2 1 '1D 13C' 1 3 1 '1D DEPTQ' 1 4 1 '2D 1H-15N HSQC' 1 5 1 '2D 1H-1H COSY' 1 6 1 '2D 1H-1H TOCSY' 1 7 1 '2D HMBC' 1 8 1 '2D 1H-1H NOESY' 1 9 1 '3D 1H-15N TOCSY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N5C _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 156 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 34 _pdbx_nmr_constraints.NOE_long_range_total_count 62 _pdbx_nmr_constraints.NOE_medium_range_total_count 14 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 46 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2N5C _pdbx_nmr_refine.method 'simulated annealing, distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 1 Vriend 'geometry optimization' 'WHAT IF' 11.12.31 2 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2.1 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 LEU N N N N 44 LEU CA C N S 45 LEU C C N N 46 LEU O O N N 47 LEU CB C N N 48 LEU CG C N N 49 LEU CD1 C N N 50 LEU CD2 C N N 51 LEU OXT O N N 52 LEU H H N N 53 LEU H2 H N N 54 LEU HA H N N 55 LEU HB2 H N N 56 LEU HB3 H N N 57 LEU HG H N N 58 LEU HD11 H N N 59 LEU HD12 H N N 60 LEU HD13 H N N 61 LEU HD21 H N N 62 LEU HD22 H N N 63 LEU HD23 H N N 64 LEU HXT H N N 65 LYS N N N N 66 LYS CA C N S 67 LYS C C N N 68 LYS O O N N 69 LYS CB C N N 70 LYS CG C N N 71 LYS CD C N N 72 LYS CE C N N 73 LYS NZ N N N 74 LYS OXT O N N 75 LYS H H N N 76 LYS H2 H N N 77 LYS HA H N N 78 LYS HB2 H N N 79 LYS HB3 H N N 80 LYS HG2 H N N 81 LYS HG3 H N N 82 LYS HD2 H N N 83 LYS HD3 H N N 84 LYS HE2 H N N 85 LYS HE3 H N N 86 LYS HZ1 H N N 87 LYS HZ2 H N N 88 LYS HZ3 H N N 89 LYS HXT H N N 90 PHE N N N N 91 PHE CA C N S 92 PHE C C N N 93 PHE O O N N 94 PHE CB C N N 95 PHE CG C Y N 96 PHE CD1 C Y N 97 PHE CD2 C Y N 98 PHE CE1 C Y N 99 PHE CE2 C Y N 100 PHE CZ C Y N 101 PHE OXT O N N 102 PHE H H N N 103 PHE H2 H N N 104 PHE HA H N N 105 PHE HB2 H N N 106 PHE HB3 H N N 107 PHE HD1 H N N 108 PHE HD2 H N N 109 PHE HE1 H N N 110 PHE HE2 H N N 111 PHE HZ H N N 112 PHE HXT H N N 113 PRO N N N N 114 PRO CA C N S 115 PRO C C N N 116 PRO O O N N 117 PRO CB C N N 118 PRO CG C N N 119 PRO CD C N N 120 PRO OXT O N N 121 PRO H H N N 122 PRO HA H N N 123 PRO HB2 H N N 124 PRO HB3 H N N 125 PRO HG2 H N N 126 PRO HG3 H N N 127 PRO HD2 H N N 128 PRO HD3 H N N 129 PRO HXT H N N 130 SER N N N N 131 SER CA C N S 132 SER C C N N 133 SER O O N N 134 SER CB C N N 135 SER OG O N N 136 SER OXT O N N 137 SER H H N N 138 SER H2 H N N 139 SER HA H N N 140 SER HB2 H N N 141 SER HB3 H N N 142 SER HG H N N 143 SER HXT H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 LEU N CA sing N N 41 LEU N H sing N N 42 LEU N H2 sing N N 43 LEU CA C sing N N 44 LEU CA CB sing N N 45 LEU CA HA sing N N 46 LEU C O doub N N 47 LEU C OXT sing N N 48 LEU CB CG sing N N 49 LEU CB HB2 sing N N 50 LEU CB HB3 sing N N 51 LEU CG CD1 sing N N 52 LEU CG CD2 sing N N 53 LEU CG HG sing N N 54 LEU CD1 HD11 sing N N 55 LEU CD1 HD12 sing N N 56 LEU CD1 HD13 sing N N 57 LEU CD2 HD21 sing N N 58 LEU CD2 HD22 sing N N 59 LEU CD2 HD23 sing N N 60 LEU OXT HXT sing N N 61 LYS N CA sing N N 62 LYS N H sing N N 63 LYS N H2 sing N N 64 LYS CA C sing N N 65 LYS CA CB sing N N 66 LYS CA HA sing N N 67 LYS C O doub N N 68 LYS C OXT sing N N 69 LYS CB CG sing N N 70 LYS CB HB2 sing N N 71 LYS CB HB3 sing N N 72 LYS CG CD sing N N 73 LYS CG HG2 sing N N 74 LYS CG HG3 sing N N 75 LYS CD CE sing N N 76 LYS CD HD2 sing N N 77 LYS CD HD3 sing N N 78 LYS CE NZ sing N N 79 LYS CE HE2 sing N N 80 LYS CE HE3 sing N N 81 LYS NZ HZ1 sing N N 82 LYS NZ HZ2 sing N N 83 LYS NZ HZ3 sing N N 84 LYS OXT HXT sing N N 85 PHE N CA sing N N 86 PHE N H sing N N 87 PHE N H2 sing N N 88 PHE CA C sing N N 89 PHE CA CB sing N N 90 PHE CA HA sing N N 91 PHE C O doub N N 92 PHE C OXT sing N N 93 PHE CB CG sing N N 94 PHE CB HB2 sing N N 95 PHE CB HB3 sing N N 96 PHE CG CD1 doub Y N 97 PHE CG CD2 sing Y N 98 PHE CD1 CE1 sing Y N 99 PHE CD1 HD1 sing N N 100 PHE CD2 CE2 doub Y N 101 PHE CD2 HD2 sing N N 102 PHE CE1 CZ doub Y N 103 PHE CE1 HE1 sing N N 104 PHE CE2 CZ sing Y N 105 PHE CE2 HE2 sing N N 106 PHE CZ HZ sing N N 107 PHE OXT HXT sing N N 108 PRO N CA sing N N 109 PRO N CD sing N N 110 PRO N H sing N N 111 PRO CA C sing N N 112 PRO CA CB sing N N 113 PRO CA HA sing N N 114 PRO C O doub N N 115 PRO C OXT sing N N 116 PRO CB CG sing N N 117 PRO CB HB2 sing N N 118 PRO CB HB3 sing N N 119 PRO CG CD sing N N 120 PRO CG HG2 sing N N 121 PRO CG HG3 sing N N 122 PRO CD HD2 sing N N 123 PRO CD HD3 sing N N 124 PRO OXT HXT sing N N 125 SER N CA sing N N 126 SER N H sing N N 127 SER N H2 sing N N 128 SER CA C sing N N 129 SER CA CB sing N N 130 SER CA HA sing N N 131 SER C O doub N N 132 SER C OXT sing N N 133 SER CB OG sing N N 134 SER CB HB2 sing N N 135 SER CB HB3 sing N N 136 SER OG HG sing N N 137 SER OXT HXT sing N N 138 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 700 Bruker AVANCE 1 'Bruker Avance' 600 Varian VNMRS 2 'Varian VNMRS' # _atom_sites.entry_id 2N5C _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ #