HEADER CELL INVASION 14-JUL-15 2N5C TITLE SOLUTION NMR STRUCTURE OF THE LASSO PEPTIDE CHAXAPEPTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAXAPEPTIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LEEUWENHOEKII; SOURCE 3 ORGANISM_TAXID: 1437453; SOURCE 4 STRAIN: C58; SOURCE 5 OTHER_DETAILS: ISOLATE FROM HYPER-ARID ATACAMA DESERT KEYWDS CHAXAPEPTIN, RIPPS, GENOME MINING, ATACAMA DESERT, STREPTOMYCES, CELL KEYWDS 2 INVASION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.S.ELSAYED,F.TRUSCH,H.DENG,A.RAAB,I.PROKES,K.BUSARAKAM,J.A.ASENJO, AUTHOR 2 B.A.ANDREWS,P.VAN WEST,A.T.BULL,M.GOODFELLOW,Y.YI,R.EBEL,M.JASPARS, AUTHOR 3 M.E.RATEB REVDAT 3 14-JUN-23 2N5C 1 REMARK LINK REVDAT 2 28-OCT-15 2N5C 1 JRNL REVDAT 1 07-OCT-15 2N5C 0 JRNL AUTH S.S.ELSAYED,F.TRUSCH,H.DENG,A.RAAB,I.PROKES,K.BUSARAKAM, JRNL AUTH 2 J.A.ASENJO,B.A.ANDREWS,P.VAN WEST,A.T.BULL,M.GOODFELLOW, JRNL AUTH 3 Y.YI,R.EBEL,M.JASPARS,M.E.RATEB JRNL TITL CHAXAPEPTIN, A LASSO PEPTIDE FROM EXTREMOTOLERANT JRNL TITL 2 STREPTOMYCES LEEUWENHOEKII STRAIN C58 FROM THE HYPERARID JRNL TITL 3 ATACAMA DESERT. JRNL REF J.ORG.CHEM. V. 80 10252 2015 JRNL REFN ISSN 0022-3263 JRNL PMID 26402731 JRNL DOI 10.1021/ACS.JOC.5B01878 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104441. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4 MM CHAXAPEPTIN, 100% DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D 1H; 1D 13C; 1D DEPTQ; 2D 1H REMARK 210 -15N HSQC; 2D 1H-1H COSY; 2D 1H- REMARK 210 1H TOCSY; 2D HMBC; 2D 1H-1H REMARK 210 NOESY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; VNMRS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : WHAT IF 11.12.31 REMARK 210 METHOD USED : SIMULATED ANNEALING, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 GLY A 1 N - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 1 ASP A 8 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 ASP A 8 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 4 GLY A 1 N - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 4 ASP A 8 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 5 ASP A 8 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 6 ASP A 8 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 7 ASP A 8 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 12 GLY A 1 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 12 ASP A 8 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 -162.26 -69.61 REMARK 500 2 PRO A 6 -176.56 -66.03 REMARK 500 3 LYS A 5 -179.64 -175.36 REMARK 500 3 PRO A 6 -170.69 -68.62 REMARK 500 4 PRO A 6 -164.16 -68.69 REMARK 500 5 PRO A 6 -164.61 -68.82 REMARK 500 6 PRO A 6 -173.48 -68.20 REMARK 500 7 LEU A 7 111.73 68.45 REMARK 500 8 LEU A 7 74.04 40.68 REMARK 500 9 ASP A 8 -164.11 -78.88 REMARK 500 10 PRO A 6 -172.23 -64.31 REMARK 500 10 ASP A 8 -165.75 -100.73 REMARK 500 11 PRO A 6 -167.92 -64.93 REMARK 500 11 ASP A 8 -169.34 -107.59 REMARK 500 12 PRO A 6 -173.20 -68.61 REMARK 500 13 PRO A 6 -163.00 -69.76 REMARK 500 14 PRO A 6 -157.74 -71.04 REMARK 500 15 PRO A 6 -158.58 -71.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 6 LEU A 7 2 -147.85 REMARK 500 PRO A 6 LEU A 7 9 -149.81 REMARK 500 GLY A 1 PHE A 2 11 140.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 2 ASP A 8 -10.00 REMARK 500 3 ASP A 8 -13.58 REMARK 500 6 ASP A 8 -13.28 REMARK 500 8 ASP A 8 -12.34 REMARK 500 9 ASP A 8 -13.29 REMARK 500 10 ASP A 8 -13.95 REMARK 500 11 ASP A 8 -12.73 REMARK 500 14 ASP A 8 -11.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25704 RELATED DB: BMRB DBREF 2N5C A 1 15 PDB 2N5C 2N5C 1 15 SEQRES 1 A 15 GLY PHE GLY SER LYS PRO LEU ASP SER PHE GLY LEU ASN SEQRES 2 A 15 PHE PHE SHEET 1 A 2 LEU A 7 ASP A 8 0 SHEET 2 A 2 GLY A 11 LEU A 12 -1 O GLY A 11 N ASP A 8 LINK N GLY A 1 CG ASP A 8 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1