HEADER HYDROLASE 18-JUL-15 2N5K TITLE REGNASE-1 ZINC FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE ZC3H12A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 299-327; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3H12A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P KEYWDS REGNASE, REGNASE-1, ZC3H12A, ZINC FINGER, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YOKOGAWA,T.TSUSHIMA,N.N.NODA,H.KUMETA,W.ADACHI,Y.ENOKIZONO, AUTHOR 2 K.YAMASHITA,D.M.STANDLEY,O.TAKEUCHI,S.AKIRA,F.INAGAKI REVDAT 2 14-JUN-23 2N5K 1 REMARK LINK REVDAT 1 16-MAR-16 2N5K 0 JRNL AUTH M.YOKOGAWA,T.TSUSHIMA,N.N.NODA,H.KUMETA,Y.ENOKIZONO, JRNL AUTH 2 K.YAMASHITA,D.M.STANDLEY,O.TAKEUCHI,S.AKIRA,F.INAGAKI JRNL TITL STRUCTURAL BASIS FOR THE REGULATION OF ENZYMATIC ACTIVITY OF JRNL TITL 2 REGNASE-1 BY DOMAIN-DOMAIN INTERACTIONS JRNL REF SCI REP V. 6 22324 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26927947 JRNL DOI 10.1038/SREP22324 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104449. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 170 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM [U-99% 13C; U-99% 15N] REMARK 210 REG1_ZNF-1, 10% V/V [U-2H] D2O-2, REMARK 210 5 UG DSS-3, 20 MM HEPES-4, 150 REMARK 210 MM SODIUM CHLORIDE-5, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D C(CO)NH; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 (HCA)CO(CA)NH; 3D HN(CA)HA; 3D REMARK 210 HN(CO)CA; 3D HNCO; 2D HBCBCGCDHD; REMARK 210 2D HBCBCGCDCEHE; 3D HCCH-TOCSY REMARK 210 ALIPHATIC; 3D HCCH-TOCSY REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2008, OLIVIA, TALOS, REMARK 210 CYANA 2.1, RNMRTK V.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 322 ZN ZN A 400 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 300 60.65 -106.07 REMARK 500 1 PRO A 305 -172.93 -69.79 REMARK 500 2 LYS A 303 -57.19 -125.31 REMARK 500 2 PRO A 305 -171.93 -69.72 REMARK 500 2 PRO A 326 -169.77 -69.76 REMARK 500 3 PRO A 305 -170.75 -69.72 REMARK 500 3 PRO A 326 -170.06 -69.78 REMARK 500 4 PRO A 305 -175.25 -69.77 REMARK 500 4 LYS A 317 31.14 -99.01 REMARK 500 4 PRO A 326 -169.89 -69.75 REMARK 500 5 GLU A 300 54.88 -111.06 REMARK 500 5 PRO A 305 -174.80 -69.73 REMARK 500 6 GLU A 300 55.99 -118.66 REMARK 500 6 PRO A 305 -175.69 -69.76 REMARK 500 6 LYS A 317 31.86 -98.46 REMARK 500 6 PRO A 326 -169.90 -69.82 REMARK 500 7 GLU A 300 45.31 -100.11 REMARK 500 7 PRO A 305 -173.03 -69.69 REMARK 500 7 ARG A 319 31.51 -96.02 REMARK 500 7 PRO A 326 -170.80 -69.83 REMARK 500 8 PRO A 305 -173.66 -69.80 REMARK 500 8 LYS A 317 31.66 -98.60 REMARK 500 8 PRO A 326 -172.07 -69.75 REMARK 500 9 PRO A 305 -173.87 -69.75 REMARK 500 9 PRO A 326 -170.74 -69.77 REMARK 500 10 PRO A 305 -171.03 -69.76 REMARK 500 11 PRO A 305 -173.50 -69.75 REMARK 500 12 PRO A 305 -177.98 -69.78 REMARK 500 12 PRO A 326 -170.64 -69.71 REMARK 500 13 LYS A 303 -51.19 -128.13 REMARK 500 13 PRO A 305 -174.71 -69.74 REMARK 500 14 GLU A 300 58.74 -101.09 REMARK 500 14 PRO A 305 -174.82 -69.68 REMARK 500 14 PHE A 320 173.13 -59.80 REMARK 500 14 PRO A 326 -170.70 -69.72 REMARK 500 15 PRO A 305 -173.17 -69.74 REMARK 500 15 PRO A 326 -171.22 -69.71 REMARK 500 16 GLU A 300 64.33 -109.10 REMARK 500 16 LYS A 303 -71.09 -51.78 REMARK 500 16 ARG A 319 30.75 -95.98 REMARK 500 16 PRO A 326 -179.27 -69.79 REMARK 500 17 PRO A 305 -173.66 -69.74 REMARK 500 18 GLU A 300 64.36 -118.45 REMARK 500 18 PRO A 305 -173.66 -69.76 REMARK 500 19 PRO A 305 -172.26 -69.74 REMARK 500 19 PRO A 326 -170.49 -69.74 REMARK 500 20 LYS A 303 -55.23 -121.87 REMARK 500 20 PRO A 305 -172.39 -69.63 REMARK 500 20 LYS A 317 31.74 -99.96 REMARK 500 20 PRO A 326 -166.71 -69.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 306 SG REMARK 620 2 CYS A 312 SG 146.1 REMARK 620 3 CYS A 318 SG 67.6 117.2 REMARK 620 4 HIS A 322 NE2 85.5 125.4 94.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25719 RELATED DB: BMRB REMARK 900 RELATED ID: 2N5J RELATED DB: PDB REMARK 900 RELATED ID: 2N5L RELATED DB: PDB DBREF 2N5K A 299 327 UNP Q5D1E7 ZC12A_MOUSE 299 327 SEQRES 1 A 29 SER GLU HIS ARG LYS GLN PRO CYS PRO TYR GLY LYS LYS SEQRES 2 A 29 CYS THR TYR GLY ILE LYS CYS ARG PHE PHE HIS PRO GLU SEQRES 3 A 29 ARG PRO SER HET ZN A 400 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SSBOND 1 CYS A 306 CYS A 318 1555 1555 2.61 LINK SG CYS A 306 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 312 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 318 ZN ZN A 400 1555 1555 2.35 LINK NE2 HIS A 322 ZN ZN A 400 1555 1555 2.10 SITE 1 AC1 4 CYS A 306 CYS A 312 CYS A 318 HIS A 322 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1