HEADER DNA BINDING PROTEIN 22-JUL-15 2N5N TITLE STRUCTURE OF AN N-TERMINAL DOMAIN OF CHD4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 145-225; COMPND 5 SYNONYM: CHD-4, ATP-DEPENDENT HELICASE CHD4, MI-2 AUTOANTIGEN 218 KDA COMPND 6 PROTEIN, MI2-BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS HMG-BOX-LIKE DOMAIN, CHD4, PAR-BINDING, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.P.G.SILVA,J.P.MACKAY REVDAT 4 14-JUN-23 2N5N 1 REMARK SEQADV REVDAT 3 27-JAN-16 2N5N 1 JRNL REVDAT 2 25-NOV-15 2N5N 1 JRNL REVDAT 1 18-NOV-15 2N5N 0 JRNL AUTH A.P.SILVA,D.P.RYAN,Y.GALANTY,J.K.LOW,M.VANDEVENNE, JRNL AUTH 2 S.P.JACKSON,J.P.MACKAY JRNL TITL THE N-TERMINAL REGION OF CHROMODOMAIN HELICASE DNA-BINDING JRNL TITL 2 PROTEIN 4 (CHD4) IS ESSENTIAL FOR ACTIVITY AND CONTAINS A JRNL TITL 3 HIGH MOBILITY GROUP (HMG) BOX-LIKE-DOMAIN THAT CAN BIND JRNL TITL 4 POLY(ADP-RIBOSE). JRNL REF J.BIOL.CHEM. V. 291 924 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 26565020 JRNL DOI 10.1074/JBC.M115.683227 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, A.T. ET AL. REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104452. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 230 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 350 UM [U-100% 13C; U-100% 15N] REMARK 210 CHD4, 20 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 0.2 MM REMARK 210 DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 2D 1H-13C HSQC; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D HNHA; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 164 20.15 -76.86 REMARK 500 2 LEU A 175 50.01 -96.39 REMARK 500 2 ASN A 193 89.82 -150.44 REMARK 500 2 SER A 222 -77.93 68.26 REMARK 500 3 LYS A 146 149.82 179.46 REMARK 500 3 LEU A 175 55.83 -95.44 REMARK 500 5 ASP A 164 21.33 -71.62 REMARK 500 5 LEU A 175 59.43 -97.13 REMARK 500 5 ASN A 193 89.33 -151.95 REMARK 500 5 LYS A 219 -63.93 -168.80 REMARK 500 5 SER A 222 26.97 -143.14 REMARK 500 6 SER A 145 103.94 69.16 REMARK 500 6 PHE A 218 38.09 -78.37 REMARK 500 7 LEU A 142 172.33 65.90 REMARK 500 7 SER A 144 -62.84 -128.78 REMARK 500 7 SER A 145 -156.86 70.44 REMARK 500 7 ASP A 164 20.14 -79.50 REMARK 500 7 LEU A 175 49.40 -95.68 REMARK 500 7 PHE A 218 -73.70 -68.16 REMARK 500 7 LYS A 219 -57.55 151.17 REMARK 500 8 SER A 145 -42.90 -147.28 REMARK 500 8 LYS A 146 84.57 59.79 REMARK 500 8 LEU A 175 59.16 -99.73 REMARK 500 8 SER A 222 30.64 -98.27 REMARK 500 9 SER A 145 -33.54 -147.19 REMARK 500 9 LYS A 149 125.24 77.74 REMARK 500 9 PHE A 184 -60.69 -91.31 REMARK 500 10 LEU A 142 -73.21 -129.74 REMARK 500 11 PRO A 141 97.02 -68.61 REMARK 500 11 SER A 145 175.51 71.19 REMARK 500 11 LEU A 175 53.64 -91.84 REMARK 500 11 SER A 221 -155.01 -130.70 REMARK 500 12 LEU A 142 -67.44 74.13 REMARK 500 12 SER A 145 -61.52 -122.23 REMARK 500 12 ASN A 216 109.99 -54.73 REMARK 500 12 LYS A 219 100.03 69.20 REMARK 500 13 LYS A 146 88.08 56.30 REMARK 500 13 ASP A 164 20.05 -78.30 REMARK 500 13 LEU A 175 51.61 -95.57 REMARK 500 13 SER A 222 -29.13 -154.15 REMARK 500 14 SER A 144 -97.69 52.92 REMARK 500 14 SER A 145 14.43 -140.73 REMARK 500 14 LYS A 146 119.56 66.38 REMARK 500 14 LEU A 175 54.61 -98.92 REMARK 500 14 LYS A 219 154.86 174.84 REMARK 500 15 LEU A 175 54.89 -95.17 REMARK 500 15 SER A 222 91.27 64.69 REMARK 500 15 ALA A 224 49.33 -108.66 REMARK 500 16 LYS A 149 135.04 67.00 REMARK 500 16 ASP A 164 20.61 -74.64 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 173 0.08 SIDE CHAIN REMARK 500 9 ARG A 210 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18906 RELATED DB: BMRB DBREF 2N5N A 145 225 UNP Q14839 CHD4_HUMAN 145 225 SEQADV 2N5N GLY A 140 UNP Q14839 EXPRESSION TAG SEQADV 2N5N PRO A 141 UNP Q14839 EXPRESSION TAG SEQADV 2N5N LEU A 142 UNP Q14839 EXPRESSION TAG SEQADV 2N5N GLY A 143 UNP Q14839 EXPRESSION TAG SEQADV 2N5N SER A 144 UNP Q14839 EXPRESSION TAG SEQRES 1 A 86 GLY PRO LEU GLY SER SER LYS GLU PRO LYS SER SER ALA SEQRES 2 A 86 GLN LEU LEU GLU ASP TRP GLY MET GLU ASP ILE ASP HIS SEQRES 3 A 86 VAL PHE SER GLU GLU ASP TYR ARG THR LEU THR ASN TYR SEQRES 4 A 86 LYS ALA PHE SER GLN PHE VAL ARG PRO LEU ILE ALA ALA SEQRES 5 A 86 LYS ASN PRO LYS ILE ALA VAL SER LYS MET MET MET VAL SEQRES 6 A 86 LEU GLY ALA LYS TRP ARG GLU PHE SER THR ASN ASN PRO SEQRES 7 A 86 PHE LYS GLY SER SER GLY ALA SER HELIX 1 1 SER A 150 TRP A 158 1 9 HELIX 2 2 SER A 168 LEU A 175 1 8 HELIX 3 3 ASN A 177 ALA A 191 1 15 HELIX 4 4 ALA A 197 ASN A 216 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1