HEADER APOPTOSIS 24-JUL-15 2N5R TITLE NMR STRUCTURE OF CFLIP-DERIVED CALMODULIN BINDING PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASP8 AND FADD-LIKE APOPTOSIS REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DED 1 DOMAIN RESIDUES 62-73; COMPND 5 SYNONYM: CASPASE HOMOLOG, CASH, CASPASE-EIGHT-RELATED PROTEIN, COMPND 6 CASPER, CASPASE-LIKE APOPTOSIS REGULATORY PROTEIN, CLARP, CELLULAR COMPND 7 FLICE-LIKE INHIBITORY PROTEIN, C-FLIP, FADD-LIKE ANTIAPOPTOTIC COMPND 8 MOLECULE 1, FLAME-1, INHIBITOR OF FLICE, I-FLICE, MACH-RELATED COMPND 9 INDUCER OF TOXICITY, MRIT, USURPIN, CASP8 AND FADD-LIKE APOPTOSIS COMPND 10 REGULATOR SUBUNIT P43, CASP8 AND FADD-LIKE APOPTOSIS REGULATOR COMPND 11 SUBUNIT P12; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS CALMODULIN, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR A.E.PANAITIU REVDAT 2 14-JUN-23 2N5R 1 REMARK REVDAT 1 18-NOV-15 2N5R 0 JRNL AUTH G.GAIDOS,A.E.PANAITIU,B.GUO,M.PELLEGRINI,D.F.MIERKE JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF THE INTERACTION SITE JRNL TITL 2 BETWEEN CFLIPL AND CALMODULIN. JRNL REF PLOS ONE V. 10 41692 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26529318 JRNL DOI 10.1371/JOURNAL.PONE.0141692 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, IN-HOUSE_SOFTWARE REMARK 3 AUTHORS : GODDARD (SPARKY), DALE F. MIERKE (IN REMARK 3 -HOUSE_SOFTWARE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000104456. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE, 150 REMARK 210 MM SODIUM CHLORIDE, 1 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 97 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ASP A 5 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 3 ARG A 3 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 3 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 ARG A 3 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 6 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 PHE A 4 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 6 LEU A 6 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 3 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 10 PHE A 4 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 10 PHE A 4 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 11 PHE A 4 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 12 ARG A 3 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 13 ASP A 5 CB - CG - OD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 14 ARG A 3 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 14 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 PHE A 4 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 16 ARG A 3 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 16 PHE A 4 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 19 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 21 ARG A 3 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 21 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 14.62 56.83 REMARK 500 1 ARG A 3 -122.82 -88.14 REMARK 500 1 PHE A 4 53.84 -64.69 REMARK 500 2 PHE A 4 71.96 -167.15 REMARK 500 3 ARG A 3 -111.58 -126.90 REMARK 500 3 PHE A 4 39.11 -56.82 REMARK 500 3 ASP A 5 51.34 -107.97 REMARK 500 4 ARG A 2 24.88 -157.41 REMARK 500 4 PHE A 4 10.71 -149.31 REMARK 500 4 LEU A 6 -11.86 -48.20 REMARK 500 5 ARG A 2 73.47 -28.65 REMARK 500 5 ARG A 3 -162.97 -170.10 REMARK 500 5 PHE A 4 60.33 -36.90 REMARK 500 6 ARG A 3 -123.81 -113.54 REMARK 500 6 PHE A 4 25.64 -52.39 REMARK 500 7 ARG A 3 -138.77 -104.07 REMARK 500 7 PHE A 4 57.70 -50.15 REMARK 500 8 ARG A 2 -12.28 -160.76 REMARK 500 8 PHE A 4 60.12 -179.33 REMARK 500 9 ARG A 2 14.81 -147.02 REMARK 500 9 PHE A 4 72.51 -175.23 REMARK 500 10 PHE A 4 36.75 -177.85 REMARK 500 10 ASP A 5 52.91 -114.01 REMARK 500 11 ARG A 2 80.24 -49.07 REMARK 500 11 ARG A 3 -152.98 -164.42 REMARK 500 11 PHE A 4 70.25 -34.90 REMARK 500 12 PHE A 4 51.65 -171.43 REMARK 500 12 LEU A 11 47.80 -94.68 REMARK 500 13 ARG A 3 20.11 -165.69 REMARK 500 14 ARG A 2 35.88 37.38 REMARK 500 14 ARG A 3 -133.62 -110.60 REMARK 500 14 PHE A 4 54.34 -62.47 REMARK 500 15 ARG A 3 -140.05 -97.40 REMARK 500 15 PHE A 4 92.86 -59.33 REMARK 500 16 ARG A 2 82.41 -63.85 REMARK 500 16 ARG A 3 -148.45 -144.70 REMARK 500 16 PHE A 4 46.51 -40.51 REMARK 500 17 ARG A 2 72.21 -33.79 REMARK 500 17 ARG A 3 -134.60 -149.78 REMARK 500 17 PHE A 4 71.78 -55.60 REMARK 500 17 LYS A 8 2.02 -64.49 REMARK 500 18 ARG A 2 51.87 71.96 REMARK 500 18 PHE A 4 72.72 -151.09 REMARK 500 18 ASP A 5 -39.46 -133.83 REMARK 500 18 LEU A 6 13.83 -58.03 REMARK 500 18 LEU A 11 13.28 -68.07 REMARK 500 19 PHE A 4 30.87 -170.17 REMARK 500 20 ARG A 2 87.20 103.59 REMARK 500 20 PHE A 4 43.23 -173.94 REMARK 500 21 ARG A 3 -145.28 -102.95 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 3 PHE A 4 1 -148.52 REMARK 500 PHE A 4 ASP A 5 1 129.46 REMARK 500 ARG A 3 PHE A 4 2 84.38 REMARK 500 PHE A 4 ASP A 5 2 116.44 REMARK 500 ASP A 5 LEU A 6 2 136.84 REMARK 500 LEU A 6 LEU A 7 2 -133.38 REMARK 500 LEU A 7 LYS A 8 2 146.75 REMARK 500 ARG A 3 PHE A 4 3 -130.18 REMARK 500 PHE A 4 ASP A 5 3 121.97 REMARK 500 ASP A 5 LEU A 6 3 144.45 REMARK 500 LEU A 6 LEU A 7 3 -137.17 REMARK 500 LEU A 7 LYS A 8 3 144.02 REMARK 500 ARG A 2 ARG A 3 4 136.93 REMARK 500 ARG A 3 PHE A 4 4 66.50 REMARK 500 ARG A 3 PHE A 4 5 -117.06 REMARK 500 PHE A 4 ASP A 5 5 126.29 REMARK 500 ARG A 3 PHE A 4 6 -126.38 REMARK 500 PHE A 4 ASP A 5 6 132.46 REMARK 500 ASP A 5 LEU A 6 6 122.75 REMARK 500 LEU A 6 LEU A 7 6 -142.71 REMARK 500 LEU A 7 LYS A 8 6 144.80 REMARK 500 LYS A 8 ARG A 9 6 148.41 REMARK 500 ILE A 10 LEU A 11 6 138.65 REMARK 500 ARG A 3 PHE A 4 7 -139.35 REMARK 500 PHE A 4 ASP A 5 7 127.47 REMARK 500 LYS A 8 ARG A 9 7 145.58 REMARK 500 LEU A 11 LYS A 12 7 -135.22 REMARK 500 ARG A 3 PHE A 4 8 110.14 REMARK 500 PHE A 4 ASP A 5 8 146.00 REMARK 500 ARG A 3 PHE A 4 9 75.82 REMARK 500 PHE A 4 ASP A 5 9 135.23 REMARK 500 ARG A 2 ARG A 3 10 145.53 REMARK 500 ARG A 3 PHE A 4 10 103.71 REMARK 500 PHE A 4 ASP A 5 10 141.82 REMARK 500 LEU A 7 LYS A 8 10 146.11 REMARK 500 ARG A 3 PHE A 4 11 -121.18 REMARK 500 PHE A 4 ASP A 5 11 124.24 REMARK 500 ARG A 2 ARG A 3 12 143.08 REMARK 500 ARG A 3 PHE A 4 12 102.62 REMARK 500 PHE A 4 ASP A 5 12 143.20 REMARK 500 PHE A 4 ASP A 5 13 129.09 REMARK 500 ARG A 3 PHE A 4 14 -146.32 REMARK 500 PHE A 4 ASP A 5 14 124.44 REMARK 500 ARG A 3 PHE A 4 15 -146.79 REMARK 500 PHE A 4 ASP A 5 15 105.59 REMARK 500 ARG A 3 PHE A 4 16 -142.94 REMARK 500 PHE A 4 ASP A 5 16 124.27 REMARK 500 ARG A 3 PHE A 4 17 -124.49 REMARK 500 PHE A 4 ASP A 5 17 124.22 REMARK 500 ARG A 2 ARG A 3 18 136.28 REMARK 500 REMARK 500 THIS ENTRY HAS 61 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ASP A 5 0.08 SIDE CHAIN REMARK 500 2 ASP A 5 0.11 SIDE CHAIN REMARK 500 8 ASP A 5 0.07 SIDE CHAIN REMARK 500 10 ARG A 2 0.12 SIDE CHAIN REMARK 500 10 ASP A 5 0.11 SIDE CHAIN REMARK 500 11 ARG A 3 0.14 SIDE CHAIN REMARK 500 11 ARG A 9 0.12 SIDE CHAIN REMARK 500 13 ASP A 5 0.07 SIDE CHAIN REMARK 500 16 ARG A 3 0.11 SIDE CHAIN REMARK 500 16 ASP A 5 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 VAL A 1 12.16 REMARK 500 1 PHE A 4 -12.03 REMARK 500 2 LEU A 7 -17.30 REMARK 500 3 ARG A 3 14.44 REMARK 500 3 PHE A 4 -19.25 REMARK 500 3 LEU A 6 10.30 REMARK 500 3 LEU A 7 -17.89 REMARK 500 4 ARG A 3 12.38 REMARK 500 4 LEU A 7 -10.15 REMARK 500 5 PHE A 4 -21.79 REMARK 500 5 ASP A 5 -11.12 REMARK 500 5 LEU A 6 -11.03 REMARK 500 5 LEU A 7 -11.70 REMARK 500 6 ARG A 3 13.03 REMARK 500 6 PHE A 4 -14.18 REMARK 500 6 ASP A 5 -14.60 REMARK 500 6 LEU A 6 13.34 REMARK 500 6 LEU A 7 -13.93 REMARK 500 6 ILE A 10 -15.68 REMARK 500 7 VAL A 1 10.39 REMARK 500 7 ARG A 3 10.01 REMARK 500 7 PHE A 4 -19.94 REMARK 500 8 ARG A 3 21.04 REMARK 500 8 PHE A 4 -16.46 REMARK 500 9 ARG A 3 -12.20 REMARK 500 9 PHE A 4 -17.78 REMARK 500 9 LYS A 8 -17.26 REMARK 500 10 ARG A 2 -12.97 REMARK 500 10 PHE A 4 -18.62 REMARK 500 10 LEU A 7 -14.87 REMARK 500 11 PHE A 4 -19.45 REMARK 500 11 ASP A 5 -10.58 REMARK 500 11 LYS A 8 -13.80 REMARK 500 12 ARG A 2 -10.01 REMARK 500 12 PHE A 4 -17.07 REMARK 500 12 ASP A 5 -11.07 REMARK 500 13 VAL A 1 10.15 REMARK 500 13 PHE A 4 -18.31 REMARK 500 13 ASP A 5 -11.41 REMARK 500 14 PHE A 4 -18.75 REMARK 500 14 LEU A 6 -10.39 REMARK 500 14 LYS A 8 -11.23 REMARK 500 15 PHE A 4 -20.79 REMARK 500 15 ASP A 5 -11.09 REMARK 500 15 LEU A 7 -10.17 REMARK 500 16 ARG A 3 12.96 REMARK 500 16 PHE A 4 -19.45 REMARK 500 17 PHE A 4 -21.59 REMARK 500 17 LEU A 7 -12.33 REMARK 500 17 LYS A 8 -11.49 REMARK 500 REMARK 500 THIS ENTRY HAS 62 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25726 RELATED DB: BMRB DBREF 2N5R A 1 12 UNP O15519 CFLAR_HUMAN 62 73 SEQRES 1 A 12 VAL ARG ARG PHE ASP LEU LEU LYS ARG ILE LEU LYS HELIX 1 1 ASP A 5 LEU A 11 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1