data_2N6T # _entry.id 2N6T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id RCSB104494 RCSB 2N6T PDB 25781 BMRB D_1000104494 WWPDB # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25781 BMRB unspecified . 2N6S PDB unspecified . 2N6W PDB unspecified . 2N6X PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N6T _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-08-28 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barnwal, R.' 1 'Godin, K.' 2 'Varani, G.' 3 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 4 # _citation.id primary _citation.title 'Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 44 _citation.page_first 9426 _citation.page_last 9437 _citation.year 2016 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27369378 _citation.pdbx_database_id_DOI 10.1093/nar/gkw584 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Barnwal, R.P.' 1 primary 'Loh, E.' 2 primary 'Godin, K.S.' 3 primary 'Yip, J.' 4 primary 'Lavender, H.' 5 primary 'Tang, C.M.' 6 primary 'Varani, G.' 7 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (42-MER)' _entity.formula_weight 13348.853 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUAGAGUAUAAUUAGUCUUCGGACUUCCUUAUACUUAUCC _entity_poly.pdbx_seq_one_letter_code_can GGGUAGAGUAUAAUUAGUCUUCGGACUUCCUUAUACUUAUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 A n 1 6 G n 1 7 A n 1 8 G n 1 9 U n 1 10 A n 1 11 U n 1 12 A n 1 13 A n 1 14 U n 1 15 U n 1 16 A n 1 17 G n 1 18 U n 1 19 C n 1 20 U n 1 21 U n 1 22 C n 1 23 G n 1 24 G n 1 25 A n 1 26 C n 1 27 U n 1 28 U n 1 29 C n 1 30 C n 1 31 U n 1 32 U n 1 33 A n 1 34 U n 1 35 A n 1 36 C n 1 37 U n 1 38 U n 1 39 A n 1 40 U n 1 41 C n 1 42 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Neisseria meningitidis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 487 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N6T _struct_ref.pdbx_db_accession 2N6T _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N6T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 42 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2N6T _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 42 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 42 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '3D HCCH-TOCSY' 1 6 1 '3D 1H-13C NOESY' 1 7 1 '2D DQF-COSY' 1 8 1 ARTSY 1 9 1 ARTSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER), 95% H2O/5% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker Avance 1 'Bruker Avance' 600 Bruker Avance 2 'Bruker Avance' 900 Agilent INOVA 3 'Agilent INOVA' # _pdbx_nmr_refine.entry_id 2N6T _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N6T _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N6T _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' X-PLOR_NIH ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR_NIH ? 2 'Bruker Biospin' collection TOPSPIN ? 3 'Bruker Biospin' processing TOPSPIN ? 4 Goddard 'data analysis' SPARKY ? 5 Goddard 'chemical shift assignment' SPARKY ? 6 Goddard 'peak picking' SPARKY ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N6T _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N6T _struct.title 'NMR Assignment and NMR Structure of CssA3 (top stem) of CssA thermometer' _struct.pdbx_descriptor 42-MER _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N6T _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;RNA regulation, pathogen, RNA thermometer, RNA, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A G 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A G 1 A G 2 1_555 ? ? ? ? ? ? ? 1.612 ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 2 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 2 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 2 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 3 N2 ? ? ? 1_555 A U 40 O2 ? ? A G 3 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog5 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 4 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 4 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 8 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 8 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 8 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 8 N1 ? ? ? 1_555 A U 37 O2 ? ? A G 8 A U 37 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog11 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 9 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 9 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 10 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 10 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 11 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 11 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 12 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 12 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A U 15 N3 ? ? ? 1_555 A U 28 O2 ? ? A U 15 A U 28 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog20 hydrog ? ? A U 15 O4 ? ? ? 1_555 A U 28 N3 ? ? A U 15 A U 28 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog21 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 16 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 16 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 18 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 18 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N1 ? ? A U 20 A G 23 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2N6T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P Q # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 A 12 12 12 A A A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 U 27 27 27 U U A . n A 1 28 U 28 28 28 U U A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 U 32 32 32 U U A . n A 1 33 A 33 33 33 A A A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 U 37 37 37 U U A . n A 1 38 U 38 38 38 U U A . n A 1 39 A 39 39 39 A A A . n A 1 40 U 40 40 40 U U A . n A 1 41 C 41 41 41 C C A . n A 1 42 C 42 42 42 C C A . n # _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center SSGCID _pdbx_SG_project.project_name ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-03 2 'Structure model' 1 1 2016-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'CssA3 RNA (42-MER)-1' ? 0.4-1.1 mM ? 1 'CssA3 RNA (42-MER)-2' ? 0.4-1.1 mM '13C/15N-uniformly labeled' 1 'CssA3 RNA (42-MER)-3' ? 0.4-1.1 mM '13C/15N-AU labeled' 1 'CssA3 RNA (42-MER)-4' ? 0.4-1.1 mM 'partially deuterated' 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" A U 15 ? ? H42 A C 30 ? ? 1.53 2 1 "HO2'" A C 30 ? ? "O5'" A U 31 ? ? 1.60 3 3 "O2'" A G 6 ? ? H8 A A 7 ? ? 1.56 4 3 H21 A G 17 ? ? O2 A C 26 ? ? 1.59 5 4 H61 A A 7 ? ? O2 A U 38 ? ? 1.56 6 5 "HO2'" A A 25 ? ? "O4'" A C 26 ? ? 1.50 7 5 O4 A U 15 ? ? H3 A U 28 ? ? 1.59 8 6 "HO2'" A A 5 ? ? "O5'" A G 6 ? ? 1.56 9 8 "HO2'" A A 35 ? ? "O4'" A C 36 ? ? 1.50 10 9 "HO2'" A A 35 ? ? "O4'" A C 36 ? ? 1.43 11 9 "O2'" A U 37 ? ? H6 A U 38 ? ? 1.57 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N6T 'double helix' 2N6T 'a-form double helix' 2N6T tetraloop 2N6T 'mismatched base pair' 2N6T 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 41 1_555 -0.554 -0.167 -0.200 -0.644 -6.220 1.988 1 A_G2:C41_A A 2 ? A 41 ? 19 1 1 A G 3 1_555 A U 40 1_555 -1.593 1.141 -0.441 -10.358 -14.510 23.369 2 A_G3:U40_A A 3 ? A 40 ? ? ? 1 A U 4 1_555 A A 39 1_555 -0.087 0.057 0.079 -12.193 8.081 -11.842 3 A_U4:A39_A A 4 ? A 39 ? 20 1 1 A G 8 1_555 A C 36 1_555 -0.263 -0.219 -0.463 4.917 -5.517 -2.908 4 A_G8:C36_A A 8 ? A 36 ? 19 1 1 A U 9 1_555 A A 35 1_555 -0.198 -0.389 -0.832 -2.365 -8.637 -2.838 5 A_U9:A35_A A 9 ? A 35 ? 20 1 1 A A 10 1_555 A U 34 1_555 -0.178 -0.414 -0.769 -11.470 0.650 3.020 6 A_A10:U34_A A 10 ? A 34 ? 20 1 1 A U 11 1_555 A A 33 1_555 0.329 -0.370 -0.708 -1.344 -3.462 13.066 7 A_U11:A33_A A 11 ? A 33 ? 20 1 1 A A 12 1_555 A U 32 1_555 -0.135 -0.327 -0.781 1.439 -0.682 6.106 8 A_A12:U32_A A 12 ? A 32 ? 20 1 1 A U 15 1_555 A U 28 1_555 -2.282 -1.783 -0.753 -19.872 -15.056 12.217 9 A_U15:U28_A A 15 ? A 28 ? 16 1 1 A A 16 1_555 A U 27 1_555 -0.753 -0.189 -0.203 1.950 -14.186 6.394 10 A_A16:U27_A A 16 ? A 27 ? 20 1 1 A G 17 1_555 A C 26 1_555 0.363 0.016 -0.174 0.254 -20.035 3.909 11 A_G17:C26_A A 17 ? A 26 ? 19 1 1 A U 18 1_555 A A 25 1_555 0.386 -0.283 -0.888 8.513 -3.556 -13.874 12 A_U18:A25_A A 18 ? A 25 ? 20 1 1 A C 19 1_555 A G 24 1_555 0.811 -0.464 -0.579 -7.482 6.757 -3.616 13 A_C19:G24_A A 19 ? A 24 ? 19 1 1 A U 20 1_555 A G 23 1_555 0.982 -5.416 0.415 -4.990 4.373 -100.859 14 A_U20:G23_A A 20 ? A 23 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 41 1_555 A G 3 1_555 A U 40 1_555 1.983 -0.972 4.302 3.165 1.726 23.303 -3.156 -3.429 4.445 4.241 -7.777 23.576 1 AA_G2G3:U40C41_AA A 2 ? A 41 ? A 3 ? A 40 ? 1 A G 3 1_555 A U 40 1_555 A U 4 1_555 A A 39 1_555 -2.761 -0.637 4.581 -8.498 -13.341 35.961 1.501 2.556 5.007 -20.435 13.017 39.181 2 AA_G3U4:A39U40_AA A 3 ? A 40 ? A 4 ? A 39 ? 1 A G 8 1_555 A C 36 1_555 A U 9 1_555 A A 35 1_555 -1.118 -1.194 4.337 0.115 -9.150 31.890 0.028 1.986 4.495 -16.240 -0.205 33.144 3 AA_G8U9:A35C36_AA A 8 ? A 36 ? A 9 ? A 35 ? 1 A U 9 1_555 A A 35 1_555 A A 10 1_555 A U 34 1_555 1.116 -0.970 3.970 -2.505 8.727 30.445 -3.635 -2.575 3.466 16.171 4.642 31.739 4 AA_U9A10:U34A35_AA A 9 ? A 35 ? A 10 ? A 34 ? 1 A A 10 1_555 A U 34 1_555 A U 11 1_555 A A 33 1_555 0.725 -1.230 3.511 0.213 -0.363 27.728 -2.472 -1.458 3.532 -0.758 -0.445 27.731 5 AA_A10U11:A33U34_AA A 10 ? A 34 ? A 11 ? A 33 ? 1 A U 11 1_555 A A 33 1_555 A A 12 1_555 A U 32 1_555 -1.021 -0.893 3.908 -1.370 -1.830 30.940 -1.244 1.590 3.993 -3.424 2.564 31.022 6 AA_U11A12:U32A33_AA A 11 ? A 33 ? A 12 ? A 32 ? 1 A U 15 1_555 A U 28 1_555 A A 16 1_555 A U 27 1_555 -1.291 0.454 2.711 -3.672 9.580 38.647 -0.288 1.525 2.846 14.173 5.433 39.935 7 AA_U15A16:U27U28_AA A 15 ? A 28 ? A 16 ? A 27 ? 1 A A 16 1_555 A U 27 1_555 A G 17 1_555 A C 26 1_555 0.488 -0.490 3.713 -0.671 6.698 32.600 -2.108 -0.978 3.535 11.776 1.179 33.269 8 AA_A16G17:C26U27_AA A 16 ? A 27 ? A 17 ? A 26 ? 1 A G 17 1_555 A C 26 1_555 A U 18 1_555 A A 25 1_555 -1.606 -0.528 3.723 -2.936 -18.474 35.109 1.824 1.955 3.665 -28.283 4.494 39.642 9 AA_G17U18:A25C26_AA A 17 ? A 26 ? A 18 ? A 25 ? 1 A U 18 1_555 A A 25 1_555 A C 19 1_555 A G 24 1_555 0.236 -1.157 4.936 -1.760 0.308 29.797 -2.343 -1.009 4.902 0.597 3.418 29.849 10 AA_U18C19:G24A25_AA A 18 ? A 25 ? A 19 ? A 24 ? 1 A C 19 1_555 A G 24 1_555 A U 20 1_555 A G 23 1_555 1.621 -1.027 3.234 11.971 17.923 101.690 -0.913 -0.861 3.204 11.468 -7.660 103.326 11 AA_C19U20:G23G24_AA A 19 ? A 24 ? A 20 ? A 23 ? #