HEADER SIGNALING PROTEIN 04-SEP-15 2N77 TITLE NMR SOLUTION STRUCTURE OF A COMPLEX OF PEP-19 BOUND TO THE C-DOMAIN OF TITLE 2 APO CALMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EF-HAND DOMAINS 3 AND 4, RESIDUES 77-149; COMPND 5 SYNONYM: CAM; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PURKINJE CELL PROTEIN 4; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: BRAIN-SPECIFIC ANTIGEN PCP-4, BRAIN-SPECIFIC POLYPEPTIDE COMPND 11 PEP-19; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, SOURCE 6 CAM3, CAMC, CAMIII; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET23D; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: PCP4, PEP19; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 20 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)PLYSS; SOURCE 21 EXPRESSION_SYSTEM_VECTOR: PET23D KEYWDS INTRINSICALLY DISORDERED, STRUCTURAL TRANSITION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.WANG,J.A.PUTKEY REVDAT 3 18-AUG-21 2N77 1 REMARK SEQADV REVDAT 2 07-DEC-16 2N77 1 JRNL REVDAT 1 30-NOV-16 2N77 0 JRNL AUTH X.WANG,J.A.PUTKEY JRNL TITL PEP-19 MODULATES CALCIUM BINDING TO CALMODULIN BY JRNL TITL 2 ELECTROSTATIC STEERING. JRNL REF NAT COMMUN V. 7 13583 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27876793 JRNL DOI 10.1038/NCOMMS13583 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000104508. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 C-CAM, 1.0 MM PEP_19, 100 MM REMARK 210 POTASSIUM CHLORIDE, 5 MM [U-2H] REMARK 210 EDTA, 10 UM [U-2H] DSS, 10 MM [U- REMARK 210 2H] IMIDAZOLE, 95% H2O/5% D2O; REMARK 210 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PEP_19, 1.0 MM C-CAM, 100 MM REMARK 210 POTASSIUM CHLORIDE, 5 MM [U-2H] REMARK 210 EDTA, 10 UM [U-2H] DSS, 10 MM [U- REMARK 210 2H] IMIDAZOLE, 95% H2O/5% D2O; REMARK 210 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 C-CAM, 1.0 MM PEP_19, 100 MM REMARK 210 POTASSIUM CHLORIDE, 5 MM [U-2H] REMARK 210 EDTA, 10 UM [U-2H] DSS, 10 MM [U- REMARK 210 2H] IMIDAZOLE, 100% D2O; 0.8 MM REMARK 210 [U-100% 13C; U-100% 15N] PEP, REMARK 210 1.0 MM C-CAM, 100 MM POTASSIUM REMARK 210 CHLORIDE, 5 MM [U-2H] EDTA, 10 REMARK 210 UM [U-2H] DSS, 10 MM [U-2H] REMARK 210 IMIDAZOLE, 100% D2O; 0.5 MM [U- REMARK 210 99% 15N] C-CAM, 1.0 MM PEP_19, REMARK 210 5.0 MM [U-2H] EDTA, 5% C12E5 PEG, REMARK 210 100 MM POTASSIUM CHLORIDE, 10 REMARK 210 MM [U-2H] IMIDAZOLE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 2D 1H-13C HSQC; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D CCH- REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D F1--FILTERED, F3-EDITED REMARK 210 NOESY-HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; IPAP 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, TOPSPIN 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 THR B 10 REMARK 465 ASN B 11 REMARK 465 GLY B 12 REMARK 465 LYS B 13 REMARK 465 ASP B 14 REMARK 465 LYS B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 19 REMARK 465 ASN B 20 REMARK 465 ASP B 21 REMARK 465 GLY B 22 REMARK 465 GLN B 23 REMARK 465 LYS B 24 REMARK 465 LYS B 25 REMARK 465 VAL B 26 REMARK 465 GLN B 27 REMARK 465 GLU B 28 REMARK 465 GLU B 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 97 H TYR A 99 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 79 -165.34 -65.32 REMARK 500 1 GLU A 114 93.99 7.92 REMARK 500 1 ASP A 129 -97.13 142.60 REMARK 500 2 THR A 79 -148.53 44.51 REMARK 500 2 ASP A 80 126.93 77.09 REMARK 500 2 GLU A 114 87.38 8.82 REMARK 500 2 ALA A 128 -79.24 -86.83 REMARK 500 2 ASP A 129 -88.98 159.47 REMARK 500 2 ILE A 130 -73.85 78.74 REMARK 500 2 ALA A 147 -162.10 -166.30 REMARK 500 3 THR A 79 52.09 -179.23 REMARK 500 3 GLU A 114 87.33 11.84 REMARK 500 3 ASP A 129 -94.63 156.83 REMARK 500 3 ASP B 31 64.57 -100.55 REMARK 500 3 SER B 60 -160.06 80.43 REMARK 500 4 LYS A 77 -157.37 54.54 REMARK 500 4 ASP A 78 56.87 -90.39 REMARK 500 4 THR A 79 -155.19 46.20 REMARK 500 4 GLU A 114 88.14 13.66 REMARK 500 4 ALA A 128 -74.35 -78.66 REMARK 500 4 ASP A 129 -107.97 168.26 REMARK 500 5 ASP A 80 105.22 -22.52 REMARK 500 5 GLU A 114 88.52 14.19 REMARK 500 5 ALA A 128 -78.10 -86.22 REMARK 500 5 ASP A 129 -113.60 176.05 REMARK 500 5 ILE A 130 -121.01 64.89 REMARK 500 5 ASP A 131 -31.80 66.97 REMARK 500 5 ALA A 147 -107.28 -133.00 REMARK 500 5 GLN B 61 29.61 -153.06 REMARK 500 6 ASP A 78 67.10 -156.50 REMARK 500 6 THR A 79 -88.87 25.31 REMARK 500 6 ASP A 129 -90.41 163.78 REMARK 500 6 ILE A 130 -124.86 38.18 REMARK 500 6 ASP A 131 -29.14 73.60 REMARK 500 6 ALA A 147 82.22 -55.97 REMARK 500 6 GLN B 61 73.55 57.39 REMARK 500 7 THR A 79 77.13 72.91 REMARK 500 7 LYS A 115 104.21 44.69 REMARK 500 7 ALA A 128 -83.94 -92.38 REMARK 500 7 ASP A 129 -104.52 -179.74 REMARK 500 7 ALA A 147 70.50 -109.73 REMARK 500 7 ALA B 58 60.81 36.38 REMARK 500 8 ASP A 78 -77.21 63.46 REMARK 500 8 THR A 79 61.17 60.55 REMARK 500 8 ASP A 80 92.84 -23.51 REMARK 500 8 GLU A 114 86.16 14.28 REMARK 500 8 ASP A 129 -99.32 155.76 REMARK 500 8 ILE A 130 -118.65 61.17 REMARK 500 8 ASP A 131 -26.28 76.09 REMARK 500 8 ALA B 58 46.11 -99.73 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25796 RELATED DB: BMRB DBREF 2N77 A 76 148 UNP P62158 CALM_HUMAN 77 149 DBREF 2N77 B 3 62 UNP P48539 PCP4_HUMAN 3 62 SEQADV 2N77 MET B 1 UNP P48539 EXPRESSION TAG SEQADV 2N77 ALA B 2 UNP P48539 EXPRESSION TAG SEQRES 1 A 73 MET LYS ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA SEQRES 2 A 73 PHE ARG VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SER SEQRES 3 A 73 ALA ALA GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU SEQRES 4 A 73 LYS LEU THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU SEQRES 5 A 73 ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU SEQRES 6 A 73 PHE VAL GLN MET MET THR ALA LYS SEQRES 1 B 62 MET ALA GLU ARG GLN GLY ALA GLY ALA THR ASN GLY LYS SEQRES 2 B 62 ASP LYS THR SER GLY GLU ASN ASP GLY GLN LYS LYS VAL SEQRES 3 B 62 GLN GLU GLU PHE ASP ILE ASP MET ASP ALA PRO GLU THR SEQRES 4 B 62 GLU ARG ALA ALA VAL ALA ILE GLN SER GLN PHE ARG LYS SEQRES 5 B 62 PHE GLN LYS LYS LYS ALA GLY SER GLN SER HELIX 1 1 SER A 81 VAL A 91 1 11 HELIX 2 2 ALA A 102 LEU A 112 1 11 HELIX 3 3 THR A 117 ASP A 129 1 13 HELIX 4 4 ASN A 137 THR A 146 1 10 HELIX 5 5 ALA B 36 GLY B 59 1 24 SHEET 1 A 2 ILE A 100 SER A 101 0 SHEET 2 A 2 GLN A 135 VAL A 136 -1 O VAL A 136 N ILE A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1