data_2N89 # _entry.id 2N89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104546 RCSB ? ? 2N89 PDB pdb_00002n89 10.2210/pdb2n89/pdb 25840 BMRB ? 10.13018/BMR25840 D_1000104546 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-17 2 'Structure model' 1 1 2023-06-14 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer 5 2 'Structure model' struct_conn 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' 6 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N89 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-10-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _pdbx_database_related.db_id 25840 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abou-Assi, H.' 1 'Harkness, R.W.' 2 'Martin-Pintado, N.' 3 'Wilds, C.J.' 4 'Campos-Olivas, R.' 5 'Mittermaier, A.K.' 6 'Gonzalez, C.' 7 'Damha, M.J.' 8 # _citation.id primary _citation.title ;Stabilization of i-motif structures by 2'-beta-fluorination of DNA. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 44 _citation.page_first 4998 _citation.page_last 5009 _citation.year 2016 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27166371 _citation.pdbx_database_id_DOI 10.1093/nar/gkw402 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Assi, H.A.' 1 ? primary 'Harkness, R.W.' 2 ? primary 'Martin-Pintado, N.' 3 ? primary 'Wilds, C.J.' 4 ? primary 'Campos-Olivas, R.' 5 ? primary 'Mittermaier, A.K.' 6 ? primary 'Gonzalez, C.' 7 ? primary 'Damha, M.J.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*TP*CP*CP*(CFL)P*(CFL)P*C)-3') ; _entity.formula_weight 1741.126 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DC)(CFL)(CFL)(DC)' _entity_poly.pdbx_seq_one_letter_code_can TCCCCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DC n 1 4 CFL n 1 5 CFL n 1 6 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 CFL 4 4 4 CFL CFL A . n A 1 5 CFL 5 5 5 CFL CFL A . n A 1 6 DC 6 6 6 DC DC A . n B 1 1 DT 1 7 7 DT DT B . n B 1 2 DC 2 8 8 DC DC B . n B 1 3 DC 3 9 9 DC DC B . n B 1 4 CFL 4 10 10 CFL CFL B . n B 1 5 CFL 5 11 11 CFL CFL B . n B 1 6 DC 6 12 12 DC DC B . n C 1 1 DT 1 13 13 DT DT C . n C 1 2 DC 2 14 14 DC DC C . n C 1 3 DC 3 15 15 DC DC C . n C 1 4 CFL 4 16 16 CFL CFL C . n C 1 5 CFL 5 17 17 CFL CFL C . n C 1 6 DC 6 18 18 DC DC C . n D 1 1 DT 1 19 19 DT DT D . n D 1 2 DC 2 20 20 DC DC D . n D 1 3 DC 3 21 21 DC DC D . n D 1 4 CFL 4 22 22 CFL CFL D . n D 1 5 CFL 5 23 23 CFL CFL D . n D 1 6 DC 6 24 24 DC DC D . n # _cell.entry_id 2N89 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2N89 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N89 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N89 _struct.title 'Tetrameric i-motif structure of dT-dC-dC-CFL-CFL-dC at acidic pH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N89 _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;2'F-araC, i-motif, 2'F-ANA, Modified nucleotides, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N89 _struct_ref.pdbx_db_accession 2N89 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2N89 A 1 ? 6 ? 2N89 1 ? 6 ? 1 6 2 1 2N89 B 1 ? 6 ? 2N89 7 ? 12 ? 7 12 3 1 2N89 C 1 ? 6 ? 2N89 13 ? 18 ? 13 18 4 1 2N89 D 1 ? 6 ? 2N89 19 ? 24 ? 19 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A CFL 4 P ? ? A DC 3 A CFL 4 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale one ? A CFL 4 "O3'" ? ? ? 1_555 A CFL 5 P ? ? A CFL 4 A CFL 5 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale one ? A CFL 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A CFL 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale4 covale both ? B DC 3 "O3'" ? ? ? 1_555 B CFL 4 P ? ? B DC 9 B CFL 10 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale5 covale one ? B CFL 4 "O3'" ? ? ? 1_555 B CFL 5 P ? ? B CFL 10 B CFL 11 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale one ? B CFL 5 "O3'" ? ? ? 1_555 B DC 6 P ? ? B CFL 11 B DC 12 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale7 covale both ? C DC 3 "O3'" ? ? ? 1_555 C CFL 4 P ? ? C DC 15 C CFL 16 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale8 covale one ? C CFL 4 "O3'" ? ? ? 1_555 C CFL 5 P ? ? C CFL 16 C CFL 17 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale9 covale one ? C CFL 5 "O3'" ? ? ? 1_555 C DC 6 P ? ? C CFL 17 C DC 18 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale10 covale both ? D DC 3 "O3'" ? ? ? 1_555 D CFL 4 P ? ? D DC 21 D CFL 22 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale11 covale one ? D CFL 4 "O3'" ? ? ? 1_555 D CFL 5 P ? ? D CFL 22 D CFL 23 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale12 covale one ? D CFL 5 "O3'" ? ? ? 1_555 D DC 6 P ? ? D CFL 23 D DC 24 1_555 ? ? ? ? ? ? ? 1.601 ? ? hydrog1 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DC 2 O2 ? ? A DC 2 C DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog2 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DC 2 N4 ? ? A DC 2 C DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog3 hydrog ? ? A DC 3 N4 ? ? ? 1_555 C DC 3 O2 ? ? A DC 3 C DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DC 3 O2 ? ? ? 1_555 C DC 3 N4 ? ? A DC 3 C DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A CFL 4 N4 ? ? ? 1_555 C CFL 4 O2 ? ? A CFL 4 C CFL 16 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A CFL 4 O2 ? ? ? 1_555 C CFL 4 N4 ? ? A CFL 4 C CFL 16 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog7 hydrog ? ? A CFL 5 N4 ? ? ? 1_555 C CFL 5 O2 ? ? A CFL 5 C CFL 17 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog8 hydrog ? ? A CFL 5 O2 ? ? ? 1_555 C CFL 5 N4 ? ? A CFL 5 C CFL 17 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog9 hydrog ? ? A DC 6 N4 ? ? ? 1_555 C DC 6 O2 ? ? A DC 6 C DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? A DC 6 O2 ? ? ? 1_555 C DC 6 N4 ? ? A DC 6 C DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? B DT 1 N3 ? ? ? 1_555 D DT 1 O2 ? ? B DT 7 D DT 19 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog12 hydrog ? ? B DT 1 O2 ? ? ? 1_555 D DT 1 N3 ? ? B DT 7 D DT 19 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog13 hydrog ? ? B DC 2 N4 ? ? ? 1_555 D DC 2 O2 ? ? B DC 8 D DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog14 hydrog ? ? B DC 2 O2 ? ? ? 1_555 D DC 2 N4 ? ? B DC 8 D DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog15 hydrog ? ? B DC 3 N4 ? ? ? 1_555 D DC 3 O2 ? ? B DC 9 D DC 21 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? B DC 3 O2 ? ? ? 1_555 D DC 3 N4 ? ? B DC 9 D DC 21 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? B CFL 4 N4 ? ? ? 1_555 D CFL 4 O2 ? ? B CFL 10 D CFL 22 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog18 hydrog ? ? B CFL 4 O2 ? ? ? 1_555 D CFL 4 N4 ? ? B CFL 10 D CFL 22 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog19 hydrog ? ? B CFL 5 N4 ? ? ? 1_555 D CFL 5 O2 ? ? B CFL 11 D CFL 23 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? B CFL 5 O2 ? ? ? 1_555 D CFL 5 N4 ? ? B CFL 11 D CFL 23 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog21 hydrog ? ? B DC 6 N4 ? ? ? 1_555 D DC 6 O2 ? ? B DC 12 D DC 24 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog22 hydrog ? ? B DC 6 O2 ? ? ? 1_555 D DC 6 N4 ? ? B DC 12 D DC 24 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.94 122.90 -3.96 0.60 N 2 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.82 118.90 3.92 0.60 N 3 1 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.64 121.90 -5.26 0.70 N 4 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.48 118.90 4.58 0.60 N 5 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.41 121.90 -5.49 0.70 N 6 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.63 118.90 3.73 0.60 N 7 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.08 121.90 -4.82 0.70 N 8 1 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.84 122.90 -4.06 0.60 N 9 1 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 122.76 118.90 3.86 0.60 N 10 1 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.77 121.90 -5.13 0.70 N 11 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.21 118.90 4.31 0.60 N 12 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.77 121.90 -5.13 0.70 N 13 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.53 118.90 3.63 0.60 N 14 1 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 117.06 121.90 -4.84 0.70 N 15 1 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 110.27 108.30 1.97 0.30 N 16 1 N3 C DT 13 ? ? C2 C DT 13 ? ? O2 C DT 13 ? ? 118.43 122.30 -3.87 0.60 N 17 1 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.42 118.90 5.52 0.60 N 18 1 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.13 118.90 5.23 0.60 N 19 1 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.69 118.90 5.79 0.60 N 20 1 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 118.81 122.90 -4.09 0.60 N 21 1 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.28 118.90 5.38 0.60 N 22 1 C2 D DC 21 ? ? N3 D DC 21 ? ? C4 D DC 21 ? ? 122.91 119.90 3.01 0.50 N 23 1 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.20 118.90 5.30 0.60 N 24 1 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.63 118.90 5.73 0.60 N 25 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.25 122.90 -3.65 0.60 N 26 2 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.76 118.90 3.86 0.60 N 27 2 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.64 121.90 -5.26 0.70 N 28 2 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.29 118.90 4.39 0.60 N 29 2 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.50 121.90 -5.40 0.70 N 30 2 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.32 119.70 7.62 1.20 Y 31 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.26 108.30 1.96 0.30 N 32 2 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.07 121.90 -4.83 0.70 N 33 2 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.19 122.90 -4.71 0.60 N 34 2 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 122.82 118.90 3.92 0.60 N 35 2 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.54 121.90 -5.36 0.70 N 36 2 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.20 118.90 4.30 0.60 N 37 2 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.82 121.90 -5.08 0.70 N 38 2 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.58 118.90 3.68 0.60 N 39 2 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.72 121.90 -5.18 0.70 N 40 2 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 119.16 122.90 -3.74 0.60 N 41 2 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.50 118.90 5.60 0.60 N 42 2 C2 C DC 15 ? ? N3 C DC 15 ? ? C4 C DC 15 ? ? 122.96 119.90 3.06 0.50 N 43 2 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 123.95 118.90 5.05 0.60 N 44 2 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.42 118.90 5.52 0.60 N 45 2 "C3'" D DT 19 ? ? "O3'" D DT 19 ? ? P D DC 20 ? ? 127.03 119.70 7.33 1.20 Y 46 2 C2 D DC 20 ? ? N3 D DC 20 ? ? C4 D DC 20 ? ? 122.91 119.90 3.01 0.50 N 47 2 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.24 118.90 5.34 0.60 N 48 2 C2 D DC 21 ? ? N3 D DC 21 ? ? C4 D DC 21 ? ? 123.01 119.90 3.11 0.50 N 49 2 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.05 118.90 5.15 0.60 N 50 2 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.83 118.90 5.93 0.60 N 51 3 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 117.94 122.90 -4.96 0.60 N 52 3 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.63 118.90 3.73 0.60 N 53 3 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 117.23 121.90 -4.67 0.70 N 54 3 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.94 118.90 4.04 0.60 N 55 3 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.02 121.90 -4.88 0.70 N 56 3 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.00 119.70 7.30 1.20 Y 57 3 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.52 118.90 3.62 0.60 N 58 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.37 121.90 -4.53 0.70 N 59 3 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.80 122.90 -4.10 0.60 N 60 3 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 123.11 118.90 4.21 0.60 N 61 3 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.78 121.90 -5.12 0.70 N 62 3 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.38 118.90 4.48 0.60 N 63 3 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.96 121.90 -4.94 0.70 N 64 3 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 117.23 121.90 -4.67 0.70 N 65 3 C2 C DC 14 ? ? N3 C DC 14 ? ? C4 C DC 14 ? ? 123.02 119.90 3.12 0.50 N 66 3 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.33 118.90 5.43 0.60 N 67 3 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.36 118.90 5.46 0.60 N 68 3 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.65 118.90 5.75 0.60 N 69 3 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.17 122.90 -3.73 0.60 N 70 3 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.07 118.90 5.17 0.60 N 71 3 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 123.93 118.90 5.03 0.60 N 72 3 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 125.05 118.90 6.15 0.60 N 73 4 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.53 118.90 3.63 0.60 N 74 4 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.86 121.90 -5.04 0.70 N 75 4 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.71 118.90 3.81 0.60 N 76 4 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.82 121.90 -5.08 0.70 N 77 4 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 126.98 119.70 7.28 1.20 Y 78 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.39 121.90 -4.51 0.70 N 79 4 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 122.55 118.90 3.65 0.60 N 80 4 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.90 121.90 -5.00 0.70 N 81 4 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.16 118.90 4.26 0.60 N 82 4 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 117.01 121.90 -4.89 0.70 N 83 4 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.98 121.90 -4.92 0.70 N 84 4 C2 C DC 14 ? ? N3 C DC 14 ? ? C4 C DC 14 ? ? 123.03 119.90 3.13 0.50 N 85 4 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.25 118.90 5.35 0.60 N 86 4 C2 C DC 15 ? ? N3 C DC 15 ? ? C4 C DC 15 ? ? 123.01 119.90 3.11 0.50 N 87 4 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 123.96 118.90 5.06 0.60 N 88 4 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.42 118.90 5.52 0.60 N 89 4 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 118.97 122.90 -3.93 0.60 N 90 4 C2 D DC 20 ? ? N3 D DC 20 ? ? C4 D DC 20 ? ? 123.09 119.90 3.19 0.50 N 91 4 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 123.80 118.90 4.90 0.60 N 92 4 C2 D DC 21 ? ? N3 D DC 21 ? ? C4 D DC 21 ? ? 123.22 119.90 3.32 0.50 N 93 4 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 123.52 118.90 4.62 0.60 N 94 4 C2 D DC 24 ? ? N3 D DC 24 ? ? C4 D DC 24 ? ? 122.99 119.90 3.09 0.50 N 95 4 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.83 118.90 5.93 0.60 N 96 5 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.83 118.90 3.93 0.60 N 97 5 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.61 121.90 -5.29 0.70 N 98 5 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.89 118.90 3.99 0.60 N 99 5 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.55 121.90 -5.35 0.70 N 100 5 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.71 119.70 8.01 1.20 Y 101 5 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 101.95 104.50 -2.55 0.40 N 102 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.62 108.30 2.32 0.30 N 103 5 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.05 121.90 -4.85 0.70 N 104 5 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.16 122.90 -3.74 0.60 N 105 5 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 122.66 118.90 3.76 0.60 N 106 5 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.74 121.90 -5.16 0.70 N 107 5 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.27 118.90 4.37 0.60 N 108 5 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.81 121.90 -5.09 0.70 N 109 5 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 117.06 121.90 -4.84 0.70 N 110 5 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 119.30 122.90 -3.60 0.60 N 111 5 C2 C DC 14 ? ? N3 C DC 14 ? ? C4 C DC 14 ? ? 122.93 119.90 3.03 0.50 N 112 5 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.29 118.90 5.39 0.60 N 113 5 C2 C DC 15 ? ? N3 C DC 15 ? ? C4 C DC 15 ? ? 122.92 119.90 3.02 0.50 N 114 5 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.28 118.90 5.38 0.60 N 115 5 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.62 118.90 5.72 0.60 N 116 5 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.07 122.90 -3.83 0.60 N 117 5 "C3'" D DT 19 ? ? "O3'" D DT 19 ? ? P D DC 20 ? ? 127.07 119.70 7.37 1.20 Y 118 5 C2 D DC 20 ? ? N3 D DC 20 ? ? C4 D DC 20 ? ? 123.05 119.90 3.15 0.50 N 119 5 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.24 118.90 5.34 0.60 N 120 5 C2 D DC 21 ? ? N3 D DC 21 ? ? C4 D DC 21 ? ? 123.03 119.90 3.13 0.50 N 121 5 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 123.92 118.90 5.02 0.60 N 122 5 C2 D DC 24 ? ? N3 D DC 24 ? ? C4 D DC 24 ? ? 122.92 119.90 3.02 0.50 N 123 5 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.97 118.90 6.07 0.60 N 124 6 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.64 118.90 3.74 0.60 N 125 6 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.67 121.90 -5.23 0.70 N 126 6 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.61 118.90 3.71 0.60 N 127 6 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.67 121.90 -5.23 0.70 N 128 6 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.10 119.70 7.40 1.20 Y 129 6 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.93 121.90 -4.97 0.70 N 130 6 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 118.27 122.30 -4.03 0.60 N 131 6 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.88 122.90 -4.02 0.60 N 132 6 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.79 121.90 -5.11 0.70 N 133 6 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.17 118.90 4.27 0.60 N 134 6 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.76 121.90 -5.14 0.70 N 135 6 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.56 118.90 3.66 0.60 N 136 6 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.69 121.90 -5.21 0.70 N 137 6 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.19 118.90 5.29 0.60 N 138 6 C2 C DC 15 ? ? N3 C DC 15 ? ? C4 C DC 15 ? ? 123.03 119.90 3.13 0.50 N 139 6 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.11 118.90 5.21 0.60 N 140 6 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.50 118.90 5.60 0.60 N 141 6 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 118.22 122.30 -4.08 0.60 N 142 6 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 118.54 122.90 -4.36 0.60 N 143 6 "C3'" D DT 19 ? ? "O3'" D DT 19 ? ? P D DC 20 ? ? 127.54 119.70 7.84 1.20 Y 144 6 C2 D DC 20 ? ? N3 D DC 20 ? ? C4 D DC 20 ? ? 122.91 119.90 3.01 0.50 N 145 6 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.37 118.90 5.47 0.60 N 146 6 C2 D DC 21 ? ? N3 D DC 21 ? ? C4 D DC 21 ? ? 122.97 119.90 3.07 0.50 N 147 6 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.01 118.90 5.11 0.60 N 148 6 C2 D DC 24 ? ? N3 D DC 24 ? ? C4 D DC 24 ? ? 122.94 119.90 3.04 0.50 N 149 6 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.83 118.90 5.93 0.60 N 150 7 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.84 118.90 3.94 0.60 N 151 7 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.71 121.90 -5.19 0.70 N 152 7 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.68 118.90 3.78 0.60 N 153 7 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.80 121.90 -5.10 0.70 N 154 7 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.26 119.70 7.56 1.20 Y 155 7 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.09 121.90 -4.81 0.70 N 156 7 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.92 122.90 -3.98 0.60 N 157 7 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 117.12 121.90 -4.78 0.70 N 158 7 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.43 118.90 4.53 0.60 N 159 7 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.92 121.90 -4.98 0.70 N 160 7 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.66 118.90 3.76 0.60 N 161 7 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.95 121.90 -4.95 0.70 N 162 7 C2 C DC 14 ? ? N3 C DC 14 ? ? C4 C DC 14 ? ? 123.40 119.90 3.50 0.50 N 163 7 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.29 118.90 5.39 0.60 N 164 7 C2 C DC 15 ? ? N3 C DC 15 ? ? C4 C DC 15 ? ? 123.45 119.90 3.55 0.50 N 165 7 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 123.96 118.90 5.06 0.60 N 166 7 C2 C DC 18 ? ? N3 C DC 18 ? ? C4 C DC 18 ? ? 123.41 119.90 3.51 0.50 N 167 7 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.42 118.90 5.52 0.60 N 168 7 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.15 122.90 -3.75 0.60 N 169 7 "C3'" D DT 19 ? ? "O3'" D DT 19 ? ? P D DC 20 ? ? 127.11 119.70 7.41 1.20 Y 170 7 C2 D DC 20 ? ? N3 D DC 20 ? ? C4 D DC 20 ? ? 123.32 119.90 3.42 0.50 N 171 7 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.34 118.90 5.44 0.60 N 172 7 C2 D DC 21 ? ? N3 D DC 21 ? ? C4 D DC 21 ? ? 123.21 119.90 3.31 0.50 N 173 7 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.04 118.90 5.14 0.60 N 174 7 C2 D DC 24 ? ? N3 D DC 24 ? ? C4 D DC 24 ? ? 123.35 119.90 3.45 0.50 N 175 7 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.99 118.90 6.09 0.60 N 176 8 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.92 122.90 -3.98 0.60 N 177 8 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.69 118.90 3.79 0.60 N 178 8 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.70 121.90 -5.20 0.70 N 179 8 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.06 118.90 4.16 0.60 N 180 8 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.52 121.90 -5.38 0.70 N 181 8 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.35 119.70 7.65 1.20 Y 182 8 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.56 118.90 3.66 0.60 N 183 8 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.83 121.90 -5.07 0.70 N 184 8 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.87 122.90 -4.03 0.60 N 185 8 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.92 121.90 -4.98 0.70 N 186 8 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.37 118.90 4.47 0.60 N 187 8 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.85 121.90 -5.05 0.70 N 188 8 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.65 118.90 3.75 0.60 N 189 8 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.76 121.90 -5.14 0.70 N 190 8 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 118.86 122.90 -4.04 0.60 N 191 8 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.51 118.90 5.61 0.60 N 192 8 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.28 118.90 5.38 0.60 N 193 8 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 125.02 118.90 6.12 0.60 N 194 8 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.24 122.90 -3.66 0.60 N 195 8 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.63 118.90 5.73 0.60 N 196 8 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.24 118.90 5.34 0.60 N 197 8 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.94 118.90 6.04 0.60 N 198 9 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.93 122.90 -3.97 0.60 N 199 9 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.83 118.90 3.93 0.60 N 200 9 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.65 121.90 -5.25 0.70 N 201 9 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.07 118.90 4.17 0.60 N 202 9 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.60 121.90 -5.30 0.70 N 203 9 "C3'" A CFL 5 ? ? "O3'" A CFL 5 ? ? P A DC 6 ? ? 127.53 119.70 7.83 1.20 Y 204 9 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.95 118.90 4.05 0.60 N 205 9 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.44 121.90 -5.46 0.70 N 206 9 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.83 122.90 -4.07 0.60 N 207 9 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 122.65 118.90 3.75 0.60 N 208 9 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.79 121.90 -5.11 0.70 N 209 9 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.78 118.90 4.88 0.60 N 210 9 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.49 121.90 -5.41 0.70 N 211 9 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.62 118.90 3.72 0.60 N 212 9 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.80 121.90 -5.10 0.70 N 213 9 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.50 118.90 5.60 0.60 N 214 9 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.34 118.90 5.44 0.60 N 215 9 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 124.90 118.90 6.00 0.60 N 216 9 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.45 118.90 5.55 0.60 N 217 9 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.09 118.90 5.19 0.60 N 218 9 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 124.93 118.90 6.03 0.60 N 219 10 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.85 122.90 -4.05 0.60 N 220 10 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 123.16 118.90 4.26 0.60 N 221 10 N3 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 116.51 121.90 -5.39 0.70 N 222 10 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.32 118.90 4.42 0.60 N 223 10 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.58 121.90 -5.32 0.70 N 224 10 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.68 118.90 3.78 0.60 N 225 10 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.64 121.90 -5.26 0.70 N 226 10 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.84 122.90 -4.06 0.60 N 227 10 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 122.76 118.90 3.86 0.60 N 228 10 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 116.67 121.90 -5.23 0.70 N 229 10 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.43 118.90 4.53 0.60 N 230 10 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 116.71 121.90 -5.19 0.70 N 231 10 "C5'" B DC 12 ? ? "C4'" B DC 12 ? ? "O4'" B DC 12 ? ? 118.20 109.80 8.40 1.10 N 232 10 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 122.62 118.90 3.72 0.60 N 233 10 N3 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 116.84 121.90 -5.06 0.70 N 234 10 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 118.85 122.90 -4.05 0.60 N 235 10 N1 C DC 14 ? ? C2 C DC 14 ? ? O2 C DC 14 ? ? 124.52 118.90 5.62 0.60 N 236 10 N1 C DC 15 ? ? C2 C DC 15 ? ? O2 C DC 15 ? ? 124.22 118.90 5.32 0.60 N 237 10 N1 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 125.14 118.90 6.24 0.60 N 238 10 N3 C DC 18 ? ? C2 C DC 18 ? ? O2 C DC 18 ? ? 117.62 121.90 -4.28 0.70 N 239 10 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.05 122.90 -3.85 0.60 N 240 10 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 124.45 118.90 5.55 0.60 N 241 10 N1 D DC 21 ? ? C2 D DC 21 ? ? O2 D DC 21 ? ? 124.07 118.90 5.17 0.60 N 242 10 C2 D DC 24 ? ? N3 D DC 24 ? ? C4 D DC 24 ? ? 122.91 119.90 3.01 0.50 N 243 10 N1 D DC 24 ? ? C2 D DC 24 ? ? O2 D DC 24 ? ? 125.00 118.90 6.10 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 12 ? ? 0.062 'SIDE CHAIN' 2 3 DC B 12 ? ? 0.061 'SIDE CHAIN' 3 4 DC B 12 ? ? 0.064 'SIDE CHAIN' 4 4 DC C 15 ? ? 0.064 'SIDE CHAIN' 5 5 DC B 12 ? ? 0.074 'SIDE CHAIN' 6 5 DC C 15 ? ? 0.065 'SIDE CHAIN' 7 6 DC B 12 ? ? 0.084 'SIDE CHAIN' 8 6 DC C 15 ? ? 0.065 'SIDE CHAIN' 9 8 DC B 12 ? ? 0.064 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CFL 4 A CFL 4 ? DC ? 2 A CFL 5 A CFL 5 ? DC ? 3 B CFL 4 B CFL 10 ? DC ? 4 B CFL 5 B CFL 11 ? DC ? 5 C CFL 4 C CFL 16 ? DC ? 6 C CFL 5 C CFL 17 ? DC ? 7 D CFL 4 D CFL 22 ? DC ? 8 D CFL 5 D CFL 23 ? DC ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N89 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N89 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.5-2.0 mM DNA (5'-D(*TP*CP*CP*(CFL)P*(CFL)P*C)-3'), 10 mM sodium chloride, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.5-2.0 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(TAF)P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3'), 10 mM sodium chloride, 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*TP*CP*CP*(CFL)P*(CFL)P*C)-3')-1 ; ? 0.5-2.0 mM ? 1 'sodium chloride-2' 10 ? mM ? 1 ;DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(TAF)P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3')-3 ; ? 0.5-2.0 mM ? 2 'sodium chloride-4' 10 ? mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 10 5.0 1 atm 278 K 2 10 5.0 1 atm 298 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 2 '2D 1H-1H NOESY' 2 3 2 '2D DQF-COSY' 2 4 2 '2D 1H-1H TOCSY' 2 5 2 '2D 1H-19F HOESY' # _pdbx_nmr_refine.entry_id 2N89 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'geometry optimization' Amber ? 1 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL ? 2 Goddard 'peak picking' Sparky ? 3 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CFL O3P O N N 1 CFL P P N N 2 CFL O1P O N N 3 CFL O2P O N N 4 CFL "O5'" O N N 5 CFL "C5'" C N N 6 CFL "C4'" C N R 7 CFL "O4'" O N N 8 CFL "C3'" C N R 9 CFL "O3'" O N N 10 CFL "C2'" C N S 11 CFL "C1'" C N R 12 CFL N1 N N N 13 CFL C2 C N N 14 CFL O2 O N N 15 CFL N3 N N N 16 CFL C4 C N N 17 CFL N4 N N N 18 CFL C5 C N N 19 CFL C6 C N N 20 CFL F F N N 21 CFL HO3P H N N 22 CFL HO1P H N N 23 CFL "H5'1" H N N 24 CFL "H5'2" H N N 25 CFL "H4'" H N N 26 CFL "H3'" H N N 27 CFL "HO3'" H N N 28 CFL "H2'" H N N 29 CFL "H1'" H N N 30 CFL HN41 H N N 31 CFL HN42 H N N 32 CFL H5 H N N 33 CFL H6 H N N 34 DC OP3 O N N 35 DC P P N N 36 DC OP1 O N N 37 DC OP2 O N N 38 DC "O5'" O N N 39 DC "C5'" C N N 40 DC "C4'" C N R 41 DC "O4'" O N N 42 DC "C3'" C N S 43 DC "O3'" O N N 44 DC "C2'" C N N 45 DC "C1'" C N R 46 DC N1 N N N 47 DC C2 C N N 48 DC O2 O N N 49 DC N3 N N N 50 DC C4 C N N 51 DC N4 N N N 52 DC C5 C N N 53 DC C6 C N N 54 DC HOP3 H N N 55 DC HOP2 H N N 56 DC "H5'" H N N 57 DC "H5''" H N N 58 DC "H4'" H N N 59 DC "H3'" H N N 60 DC "HO3'" H N N 61 DC "H2'" H N N 62 DC "H2''" H N N 63 DC "H1'" H N N 64 DC H41 H N N 65 DC H42 H N N 66 DC H5 H N N 67 DC H6 H N N 68 DT OP3 O N N 69 DT P P N N 70 DT OP1 O N N 71 DT OP2 O N N 72 DT "O5'" O N N 73 DT "C5'" C N N 74 DT "C4'" C N R 75 DT "O4'" O N N 76 DT "C3'" C N S 77 DT "O3'" O N N 78 DT "C2'" C N N 79 DT "C1'" C N R 80 DT N1 N N N 81 DT C2 C N N 82 DT O2 O N N 83 DT N3 N N N 84 DT C4 C N N 85 DT O4 O N N 86 DT C5 C N N 87 DT C7 C N N 88 DT C6 C N N 89 DT HOP3 H N N 90 DT HOP2 H N N 91 DT "H5'" H N N 92 DT "H5''" H N N 93 DT "H4'" H N N 94 DT "H3'" H N N 95 DT "HO3'" H N N 96 DT "H2'" H N N 97 DT "H2''" H N N 98 DT "H1'" H N N 99 DT H3 H N N 100 DT H71 H N N 101 DT H72 H N N 102 DT H73 H N N 103 DT H6 H N N 104 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CFL O3P P sing N N 1 CFL O3P HO3P sing N N 2 CFL P O1P sing N N 3 CFL P O2P doub N N 4 CFL P "O5'" sing N N 5 CFL O1P HO1P sing N N 6 CFL "O5'" "C5'" sing N N 7 CFL "C5'" "C4'" sing N N 8 CFL "C5'" "H5'1" sing N N 9 CFL "C5'" "H5'2" sing N N 10 CFL "C4'" "O4'" sing N N 11 CFL "C4'" "C3'" sing N N 12 CFL "C4'" "H4'" sing N N 13 CFL "O4'" "C1'" sing N N 14 CFL "C3'" "O3'" sing N N 15 CFL "C3'" "C2'" sing N N 16 CFL "C3'" "H3'" sing N N 17 CFL "O3'" "HO3'" sing N N 18 CFL "C2'" "C1'" sing N N 19 CFL "C2'" F sing N N 20 CFL "C2'" "H2'" sing N N 21 CFL "C1'" N1 sing N N 22 CFL "C1'" "H1'" sing N N 23 CFL N1 C2 sing N N 24 CFL N1 C6 sing N N 25 CFL C2 O2 doub N N 26 CFL C2 N3 sing N N 27 CFL N3 C4 doub N N 28 CFL C4 N4 sing N N 29 CFL C4 C5 sing N N 30 CFL N4 HN41 sing N N 31 CFL N4 HN42 sing N N 32 CFL C5 C6 doub N N 33 CFL C5 H5 sing N N 34 CFL C6 H6 sing N N 35 DC OP3 P sing N N 36 DC OP3 HOP3 sing N N 37 DC P OP1 doub N N 38 DC P OP2 sing N N 39 DC P "O5'" sing N N 40 DC OP2 HOP2 sing N N 41 DC "O5'" "C5'" sing N N 42 DC "C5'" "C4'" sing N N 43 DC "C5'" "H5'" sing N N 44 DC "C5'" "H5''" sing N N 45 DC "C4'" "O4'" sing N N 46 DC "C4'" "C3'" sing N N 47 DC "C4'" "H4'" sing N N 48 DC "O4'" "C1'" sing N N 49 DC "C3'" "O3'" sing N N 50 DC "C3'" "C2'" sing N N 51 DC "C3'" "H3'" sing N N 52 DC "O3'" "HO3'" sing N N 53 DC "C2'" "C1'" sing N N 54 DC "C2'" "H2'" sing N N 55 DC "C2'" "H2''" sing N N 56 DC "C1'" N1 sing N N 57 DC "C1'" "H1'" sing N N 58 DC N1 C2 sing N N 59 DC N1 C6 sing N N 60 DC C2 O2 doub N N 61 DC C2 N3 sing N N 62 DC N3 C4 doub N N 63 DC C4 N4 sing N N 64 DC C4 C5 sing N N 65 DC N4 H41 sing N N 66 DC N4 H42 sing N N 67 DC C5 C6 doub N N 68 DC C5 H5 sing N N 69 DC C6 H6 sing N N 70 DT OP3 P sing N N 71 DT OP3 HOP3 sing N N 72 DT P OP1 doub N N 73 DT P OP2 sing N N 74 DT P "O5'" sing N N 75 DT OP2 HOP2 sing N N 76 DT "O5'" "C5'" sing N N 77 DT "C5'" "C4'" sing N N 78 DT "C5'" "H5'" sing N N 79 DT "C5'" "H5''" sing N N 80 DT "C4'" "O4'" sing N N 81 DT "C4'" "C3'" sing N N 82 DT "C4'" "H4'" sing N N 83 DT "O4'" "C1'" sing N N 84 DT "C3'" "O3'" sing N N 85 DT "C3'" "C2'" sing N N 86 DT "C3'" "H3'" sing N N 87 DT "O3'" "HO3'" sing N N 88 DT "C2'" "C1'" sing N N 89 DT "C2'" "H2'" sing N N 90 DT "C2'" "H2''" sing N N 91 DT "C1'" N1 sing N N 92 DT "C1'" "H1'" sing N N 93 DT N1 C2 sing N N 94 DT N1 C6 sing N N 95 DT C2 O2 doub N N 96 DT C2 N3 sing N N 97 DT N3 C4 sing N N 98 DT N3 H3 sing N N 99 DT C4 O4 doub N N 100 DT C4 C5 sing N N 101 DT C5 C7 sing N N 102 DT C5 C6 doub N N 103 DT C7 H71 sing N N 104 DT C7 H72 sing N N 105 DT C7 H73 sing N N 106 DT C6 H6 sing N N 107 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N89 'double helix' 2N89 'parallel strands' 2N89 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 D DT 1 1_555 -2.118 -3.050 0.079 17.773 -13.706 -178.814 1 B_DT7:DT19_D B 7 ? D 19 ? 13 2 1 C DC 6 1_555 A DC 6 1_555 2.031 1.621 0.050 6.584 -0.070 177.550 2 C_DC18:DC6_A C 18 ? A 6 ? 15 2 1 B DC 2 1_555 D DC 2 1_555 -2.067 -1.791 0.009 2.376 -6.339 -177.427 3 B_DC8:DC20_D B 8 ? D 20 ? 15 2 1 C CFL 5 1_555 A CFL 5 1_555 -2.014 -1.586 0.163 5.565 9.547 -176.831 4 C_CFL17:CFL5_A C 17 ? A 5 ? 15 2 1 B DC 3 1_555 D DC 3 1_555 -2.126 -1.939 0.098 -1.727 -6.838 -177.850 5 B_DC9:DC21_D B 9 ? D 21 ? 15 2 1 C CFL 4 1_555 A CFL 4 1_555 1.980 1.515 0.076 -8.880 -15.072 179.003 6 C_CFL16:CFL4_A C 16 ? A 4 ? 15 2 1 B CFL 4 1_555 D CFL 4 1_555 2.128 1.836 0.157 -6.145 -4.847 179.603 7 B_CFL10:CFL22_D B 10 ? D 22 ? 15 2 1 C DC 3 1_555 A DC 3 1_555 2.125 1.967 -0.035 -0.960 8.092 178.811 8 C_DC15:DC3_A C 15 ? A 3 ? 15 2 1 B CFL 5 1_555 D CFL 5 1_555 2.015 1.619 -0.108 -1.335 -4.820 177.776 9 B_CFL11:CFL23_D B 11 ? D 23 ? 15 2 1 C DC 2 1_555 A DC 2 1_555 1.976 1.593 0.091 -5.751 15.701 178.619 10 C_DC14:DC2_A C 14 ? A 2 ? 15 2 1 B DC 6 1_555 D DC 6 1_555 -1.987 -1.433 -0.181 -11.411 1.222 -177.586 11 B_DC12:DC24_D B 12 ? D 24 ? 15 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 D DT 1 1_555 C DC 6 1_555 A DC 6 1_555 -2.907 -2.164 0.090 -105.275 144.856 37.114 -1.105 1.437 -0.010 72.685 52.824 179.119 1 BC_DT7DC18:DC6DT19_AD B 7 ? D 19 ? C 18 ? A 6 ? 1 C DC 6 1_555 A DC 6 1_555 B DC 2 1_555 D DC 2 1_555 -2.571 -1.664 -0.038 97.066 -150.255 14.517 -0.847 1.276 -0.002 -75.538 -48.798 178.890 2 CB_DC18DC8:DC20DC6_DA C 18 ? A 6 ? B 8 ? D 20 ? 1 B DC 2 1_555 D DC 2 1_555 C CFL 5 1_555 A CFL 5 1_555 1.861 -2.466 0.128 -137.880 -109.401 -129.777 1.248 0.912 0.084 54.817 -69.088 -178.307 3 BC_DC8CFL17:CFL5DC20_AD B 8 ? D 20 ? C 17 ? A 5 ? 1 C CFL 5 1_555 A CFL 5 1_555 B DC 3 1_555 D DC 3 1_555 1.960 -2.614 -0.024 147.926 97.269 147.593 -1.307 -0.980 0.033 48.667 -74.012 179.174 4 CB_CFL17DC9:DC21CFL5_DA C 17 ? A 5 ? B 9 ? D 21 ? 1 B DC 3 1_555 D DC 3 1_555 C CFL 4 1_555 A CFL 4 1_555 2.218 1.987 0.025 117.564 -136.093 -43.334 -0.972 1.128 0.059 68.085 58.815 -179.852 5 BC_DC9CFL16:CFL4DC21_AD B 9 ? D 21 ? C 16 ? A 4 ? 1 C CFL 4 1_555 A CFL 4 1_555 B CFL 4 1_555 D CFL 4 1_555 -3.263 2.154 0.239 -137.995 -113.413 153.724 1.104 1.599 0.494 -56.718 69.011 179.686 6 CB_CFL16CFL10:CFL22CFL4_DA C 16 ? A 4 ? B 10 ? D 22 ? 1 B CFL 4 1_555 D CFL 4 1_555 C DC 3 1_555 A DC 3 1_555 2.225 -2.359 -0.142 -135.227 -115.636 114.815 -1.212 -1.074 -0.205 -57.924 67.738 178.883 7 BC_CFL10DC15:DC3CFL22_AD B 10 ? D 22 ? C 15 ? A 3 ? 1 C DC 3 1_555 A DC 3 1_555 B CFL 5 1_555 D CFL 5 1_555 -1.500 2.711 0.235 -149.996 -93.510 -114.660 -1.315 -0.815 0.285 46.891 -75.216 -178.250 8 CB_DC15CFL11:CFL23DC3_DA C 15 ? A 3 ? B 11 ? D 23 ? 1 B CFL 5 1_555 D CFL 5 1_555 C DC 2 1_555 A DC 2 1_555 -2.306 2.572 -0.216 133.813 117.308 45.683 1.359 1.069 -0.119 59.067 -67.377 178.113 9 BC_CFL11DC14:DC2CFL23_AD B 11 ? D 23 ? C 14 ? A 2 ? 1 C DC 2 1_555 A DC 2 1_555 B DC 6 1_555 D DC 6 1_555 2.527 1.432 0.190 -93.034 149.349 113.464 0.680 -1.286 0.092 74.955 46.692 177.782 10 CB_DC14DC12:DC24DC2_DA C 14 ? A 2 ? B 12 ? D 24 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' # _atom_sites.entry_id 2N89 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_