HEADER DE NOVO PROTEIN, ANTIMICROBIAL PEPTIDE 13-OCT-15 2N8D TITLE IN SILICO DESIGNED ANTIMICROBIAL PEPTIDE LAVRACIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIMICROBIAL PEPTIDE LAVRACIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DE NOVO PROTEIN, ANTIMICROBIAL PEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.PILLONG,M.BLATTER,G.SCHNEIDER REVDAT 4 14-JUN-23 2N8D 1 REMARK REVDAT 3 24-AUG-22 2N8D 1 JRNL REMARK LINK REVDAT 2 30-AUG-17 2N8D 1 JRNL REVDAT 1 18-JAN-17 2N8D 0 JRNL AUTH M.PILLONG,J.A.HISS,P.SCHNEIDER,Y.C.LIN,G.POSSELT,B.PFEIFFER, JRNL AUTH 2 M.BLATTER,A.T.MULLER,S.BACHLER,C.S.NEUHAUS,P.S.DITTRICH, JRNL AUTH 3 K.H.ALTMANN,S.WESSLER,G.SCHNEIDER JRNL TITL RATIONAL DESIGN OF MEMBRANE-PORE-FORMING PEPTIDES. JRNL REF SMALL V. 13 2017 JRNL REFN ESSN 1613-6829 JRNL PMID 28799716 JRNL DOI 10.1002/SMLL.201701316 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 12 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000104550. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 291 REMARK 210 PH : 4.1 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 8.9 UM LAVRACIN, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.97, ATNOSCANDID, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 76.15 -155.79 REMARK 500 1 TYR A 4 -38.28 -162.58 REMARK 500 1 PHE A 5 -39.54 -150.63 REMARK 500 2 ASP A 2 75.10 -155.73 REMARK 500 2 TYR A 4 -41.21 -161.29 REMARK 500 2 PHE A 5 -38.45 -148.91 REMARK 500 3 TYR A 4 -37.65 -160.25 REMARK 500 3 PHE A 5 -31.89 -168.22 REMARK 500 3 ALA A 6 -155.48 52.90 REMARK 500 4 ASP A 2 54.82 -151.77 REMARK 500 4 ALA A 6 20.68 49.53 REMARK 500 5 ASP A 2 72.43 -159.60 REMARK 500 5 TYR A 4 -45.70 -162.48 REMARK 500 5 PHE A 5 32.89 -145.87 REMARK 500 6 ASP A 2 54.57 -152.38 REMARK 500 6 TYR A 4 -158.82 -163.67 REMARK 500 6 PHE A 5 38.20 -60.49 REMARK 500 7 TYR A 4 -168.48 -164.46 REMARK 500 7 VAL A 18 -77.43 -99.26 REMARK 500 7 ARG A 19 -179.74 53.28 REMARK 500 8 ASP A 2 74.62 -158.20 REMARK 500 8 TYR A 4 -44.65 -163.33 REMARK 500 8 PHE A 5 36.06 -147.37 REMARK 500 9 ASP A 2 55.83 -149.83 REMARK 500 9 TYR A 4 -37.21 -157.25 REMARK 500 9 PHE A 5 -33.79 -166.79 REMARK 500 9 ALA A 6 -153.08 51.53 REMARK 500 10 TYR A 4 -151.57 -164.95 REMARK 500 10 ALA A 6 -147.48 49.24 REMARK 500 11 ASP A 2 52.25 -147.99 REMARK 500 11 TYR A 4 -157.20 -161.62 REMARK 500 11 PHE A 5 33.07 -58.19 REMARK 500 12 ASP A 2 74.79 -156.16 REMARK 500 12 TYR A 4 -44.65 -158.79 REMARK 500 12 PHE A 5 35.52 -169.12 REMARK 500 12 ALA A 6 109.98 -56.08 REMARK 500 13 ASP A 2 72.95 -153.15 REMARK 500 13 TYR A 4 -36.18 -160.58 REMARK 500 13 PHE A 5 -32.48 -167.16 REMARK 500 13 ALA A 6 -152.23 51.18 REMARK 500 14 ASP A 2 69.85 -157.22 REMARK 500 14 TYR A 4 145.18 -171.86 REMARK 500 14 PHE A 5 23.51 40.81 REMARK 500 15 TYR A 4 -158.80 -163.83 REMARK 500 15 PHE A 5 36.16 -60.74 REMARK 500 16 ASP A 2 58.98 -154.49 REMARK 500 16 TYR A 4 -39.57 -157.66 REMARK 500 16 PHE A 5 -55.18 -147.70 REMARK 500 17 ALA A 6 18.87 52.36 REMARK 500 17 VAL A 18 -57.86 -121.21 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25846 RELATED DB: BMRB DBREF 2N8D A 1 21 PDB 2N8D 2N8D 1 21 SEQRES 1 A 21 TRP ASP PRO TYR PHE ALA GLY VAL LYS LYS LEU THR LYS SEQRES 2 A 21 ALA ILE LEU ALA VAL ARG ALA NH2 HET NH2 A 21 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 VAL A 8 ARG A 19 1 12 LINK C ALA A 20 N NH2 A 21 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1