HEADER TRANSLATION 21-OCT-15 2N8N TITLE SOLUTION STRUCTURE OF TRANSLATION INITIATION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: INFA, SAV2228; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS TRANSLATION INITIATION, RNA-BINDING, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.KIM,K.LEE,B.LEE REVDAT 3 14-JUN-23 2N8N 1 REMARK REVDAT 2 16-NOV-16 2N8N 1 JRNL REVDAT 1 26-OCT-16 2N8N 0 JRNL AUTH D.H.KIM,S.J.KANG,K.Y.LEE,S.B.JANG,S.M.KANG,B.J.LEE JRNL TITL STRUCTURE AND DYNAMICS STUDY OF TRANSLATION INITIATION JRNL TITL 2 FACTOR 1 FROM STAPHYLOCOCCUS AUREUS SUGGESTS ITS RNA BINDING JRNL TITL 3 MODE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1865 65 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 27784646 JRNL DOI 10.1016/J.BBAPAP.2016.10.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000104560. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1MM PMSF-1, 1MM EDTA-2, 50MM REMARK 210 SODIUM CHLORIDE-3, 20MM MES-4, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HCACO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D HN(COCA) REMARK 210 CB; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 MET A 1 OE1 GLU A 8 1.56 REMARK 500 HZ3 LYS A 3 OE2 GLU A 8 1.58 REMARK 500 OE1 GLU A 10 HZ3 LYS A 52 1.59 REMARK 500 OD1 ASP A 15 HZ1 LYS A 23 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 19 41.27 73.50 REMARK 500 1 TYR A 44 26.35 -63.20 REMARK 500 1 ASP A 61 -84.08 -124.26 REMARK 500 2 ALA A 2 -78.80 167.53 REMARK 500 2 ASP A 5 -56.24 -163.56 REMARK 500 2 TYR A 44 91.41 -65.91 REMARK 500 2 ASP A 61 -71.01 -123.09 REMARK 500 2 LEU A 62 14.18 59.86 REMARK 500 3 ASP A 5 109.15 -56.70 REMARK 500 3 ASP A 61 -79.49 -116.00 REMARK 500 3 LEU A 62 16.57 58.61 REMARK 500 4 LYS A 3 -174.53 176.11 REMARK 500 4 ILE A 45 34.20 -82.95 REMARK 500 4 ASP A 61 -65.74 -123.82 REMARK 500 5 ASP A 5 -70.60 70.46 REMARK 500 5 ILE A 45 38.29 -77.19 REMARK 500 5 ASP A 61 -80.20 -116.04 REMARK 500 5 LEU A 62 18.22 58.06 REMARK 500 6 ASP A 5 -76.91 -73.34 REMARK 500 6 ILE A 45 38.28 -83.25 REMARK 500 6 ASP A 61 -85.39 -103.36 REMARK 500 6 LEU A 62 10.50 59.19 REMARK 500 7 ASP A 61 -65.49 -121.94 REMARK 500 8 LYS A 3 -48.19 -176.88 REMARK 500 8 PRO A 18 152.38 -49.65 REMARK 500 8 ASP A 61 -78.63 -105.42 REMARK 500 8 LEU A 62 18.27 59.25 REMARK 500 9 LYS A 3 -60.65 -144.08 REMARK 500 9 ILE A 45 40.05 -82.96 REMARK 500 9 ASP A 61 -59.02 -123.06 REMARK 500 10 ASP A 61 -65.68 -107.62 REMARK 500 11 LYS A 3 33.78 -140.17 REMARK 500 11 GLN A 4 -85.25 -138.70 REMARK 500 11 ASN A 19 33.18 73.52 REMARK 500 11 ARG A 46 99.91 -68.16 REMARK 500 11 ASP A 61 -90.76 -99.46 REMARK 500 11 LEU A 62 -25.94 68.29 REMARK 500 12 ALA A 20 31.84 71.83 REMARK 500 12 ILE A 45 39.46 -83.93 REMARK 500 12 ASP A 61 -81.07 -108.60 REMARK 500 13 ASP A 61 -75.90 -126.00 REMARK 500 14 ASP A 5 -66.17 -136.06 REMARK 500 14 ILE A 45 37.31 -81.78 REMARK 500 14 PRO A 49 127.88 -39.83 REMARK 500 14 ASP A 61 -78.17 -114.82 REMARK 500 15 ASN A 19 35.63 72.87 REMARK 500 15 ASP A 61 -70.68 -104.39 REMARK 500 16 LYS A 3 -151.72 -157.19 REMARK 500 16 ASP A 5 19.43 85.39 REMARK 500 16 ASP A 61 -79.07 -116.50 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 66 0.11 SIDE CHAIN REMARK 500 9 ARG A 70 0.08 SIDE CHAIN REMARK 500 15 ARG A 70 0.08 SIDE CHAIN REMARK 500 19 ARG A 41 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25856 RELATED DB: BMRB DBREF 2N8N A 1 72 UNP P65118 IF1_STAAM 1 72 SEQRES 1 A 72 MET ALA LYS GLN ASP VAL ILE GLU LEU GLU GLY THR VAL SEQRES 2 A 72 LEU ASP THR LEU PRO ASN ALA MET PHE LYS VAL GLU LEU SEQRES 3 A 72 GLU ASN GLY HIS GLU ILE LEU ALA HIS VAL SER GLY LYS SEQRES 4 A 72 ILE ARG MET ASN TYR ILE ARG ILE LEU PRO GLY ASP LYS SEQRES 5 A 72 VAL THR VAL GLU MET SER PRO TYR ASP LEU THR ARG GLY SEQRES 6 A 72 ARG ILE THR TYR ARG TYR LYS HELIX 1 1 SER A 37 ASN A 43 1 7 SHEET 1 A 6 ILE A 7 THR A 16 0 SHEET 2 A 6 MET A 21 LEU A 26 -1 O GLU A 25 N THR A 12 SHEET 3 A 6 GLU A 31 VAL A 36 -1 O ALA A 34 N PHE A 22 SHEET 4 A 6 ARG A 64 ARG A 70 1 O ILE A 67 N HIS A 35 SHEET 5 A 6 LYS A 52 MET A 57 -1 N THR A 54 O TYR A 69 SHEET 6 A 6 ILE A 7 THR A 16 -1 N ILE A 7 O MET A 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1