data_2N8V # _entry.id 2N8V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104568 RCSB ? ? 2N8V PDB pdb_00002n8v 10.2210/pdb2n8v/pdb 25867 BMRB ? 10.13018/BMR25867 D_1000104568 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-11 2 'Structure model' 1 1 2015-11-25 3 'Structure model' 1 2 2016-01-20 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N8V _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-10-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_id 25867 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Au, H.H.' 1 'Cornilescu, G.' 2 'Mouzakis, K.D.' 3 'Burke, J.E.' 4 'Ren, Q.' 5 'Lee, S.' 6 'Butcher, S.E.' 7 'Jan, E.' 8 # _citation.id primary _citation.title 'Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 112 _citation.page_first E6446 _citation.page_last E6455 _citation.year 2015 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26554019 _citation.pdbx_database_id_DOI 10.1073/pnas.1512088112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Au, H.H.' 1 ? primary 'Cornilescu, G.' 2 ? primary 'Mouzakis, K.D.' 3 ? primary 'Ren, Q.' 4 ? primary 'Burke, J.E.' 5 ? primary 'Lee, S.' 6 ? primary 'Butcher, S.E.' 7 ? primary 'Jan, E.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (70-MER)' _entity.formula_weight 22565.439 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAACAGCUGUACUGGGCAGUUACAGCAGUCGUAUGGUAACACAUGCGGCGUUCCGAAAUACCAUGCCUG _entity_poly.pdbx_seq_one_letter_code_can GGAACAGCUGUACUGGGCAGUUACAGCAGUCGUAUGGUAACACAUGCGGCGUUCCGAAAUACCAUGCCUG _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 A n 1 5 C n 1 6 A n 1 7 G n 1 8 C n 1 9 U n 1 10 G n 1 11 U n 1 12 A n 1 13 C n 1 14 U n 1 15 G n 1 16 G n 1 17 G n 1 18 C n 1 19 A n 1 20 G n 1 21 U n 1 22 U n 1 23 A n 1 24 C n 1 25 A n 1 26 G n 1 27 C n 1 28 A n 1 29 G n 1 30 U n 1 31 C n 1 32 G n 1 33 U n 1 34 A n 1 35 U n 1 36 G n 1 37 G n 1 38 U n 1 39 A n 1 40 A n 1 41 C n 1 42 A n 1 43 C n 1 44 A n 1 45 U n 1 46 G n 1 47 C n 1 48 G n 1 49 G n 1 50 C n 1 51 G n 1 52 U n 1 53 U n 1 54 C n 1 55 C n 1 56 G n 1 57 A n 1 58 A n 1 59 A n 1 60 U n 1 61 A n 1 62 C n 1 63 C n 1 64 A n 1 65 U n 1 66 G n 1 67 C n 1 68 C n 1 69 U n 1 70 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Apis mellifera' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 7460 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 A 4 4 4 A A X . n A 1 5 C 5 5 5 C C X . n A 1 6 A 6 6 6 A A X . n A 1 7 G 7 7 7 G G X . n A 1 8 C 8 8 8 C C X . n A 1 9 U 9 9 9 U U X . n A 1 10 G 10 10 10 G G X . n A 1 11 U 11 11 11 U U X . n A 1 12 A 12 12 12 A A X . n A 1 13 C 13 13 13 C C X . n A 1 14 U 14 14 14 U U X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 C 18 18 18 C C X . n A 1 19 A 19 19 19 A A X . n A 1 20 G 20 20 20 G G X . n A 1 21 U 21 21 21 U U X . n A 1 22 U 22 22 22 U U X . n A 1 23 A 23 23 23 A A X . n A 1 24 C 24 24 24 C C X . n A 1 25 A 25 25 25 A A X . n A 1 26 G 26 26 26 G G X . n A 1 27 C 27 27 27 C C X . n A 1 28 A 28 28 28 A A X . n A 1 29 G 29 29 29 G G X . n A 1 30 U 30 30 30 U U X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 U 33 33 33 U U X . n A 1 34 A 34 34 34 A A X . n A 1 35 U 35 35 35 U U X . n A 1 36 G 36 36 36 G G X . n A 1 37 G 37 37 37 G G X . n A 1 38 U 38 38 38 U U X . n A 1 39 A 39 39 39 A A X . n A 1 40 A 40 40 40 A A X . n A 1 41 C 41 41 41 C C X . n A 1 42 A 42 42 42 A A X . n A 1 43 C 43 43 43 C C X . n A 1 44 A 44 44 44 A A X . n A 1 45 U 45 45 45 U U X . n A 1 46 G 46 46 46 G G X . n A 1 47 C 47 47 47 C C X . n A 1 48 G 48 48 48 G G X . n A 1 49 G 49 49 49 G G X . n A 1 50 C 50 50 50 C C X . n A 1 51 G 51 51 51 G G X . n A 1 52 U 52 52 52 U U X . n A 1 53 U 53 53 53 U U X . n A 1 54 C 54 54 54 C C X . n A 1 55 C 55 55 55 C C X . n A 1 56 G 56 56 56 G G X . n A 1 57 A 57 57 57 A A X . n A 1 58 A 58 58 58 A A X . n A 1 59 A 59 59 59 A A X . n A 1 60 U 60 60 60 U U X . n A 1 61 A 61 61 61 A A X . n A 1 62 C 62 62 62 C C X . n A 1 63 C 63 63 63 C C X . n A 1 64 A 64 64 64 A A X . n A 1 65 U 65 65 65 U U X . n A 1 66 G 66 66 66 G G X . n A 1 67 C 67 67 67 C C X . n A 1 68 C 68 68 68 C C X . n A 1 69 U 69 69 69 U U X . n A 1 70 G 70 70 70 G G X . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N8V _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N8V _struct.title 'An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N8V _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, IAPV, pseudoknot' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N8V _struct_ref.pdbx_db_accession 2N8V _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N8V _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 70 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2N8V _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 70 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 70 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 55 N3 ? ? X G 1 X C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 55 O2 ? ? X G 1 X C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 55 N4 ? ? X G 1 X C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 1 N2 ? ? ? 1_555 A A 57 N1 ? ? X G 1 X A 57 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog5 hydrog ? ? A G 1 N3 ? ? ? 1_555 A A 57 N6 ? ? X G 1 X A 57 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog6 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 54 N3 ? ? X G 2 X C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 54 O2 ? ? X G 2 X C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 54 N4 ? ? X G 2 X C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 55 N3 ? ? X G 2 X C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 55 O2 ? ? X G 2 X C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 55 N4 ? ? X G 2 X C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 53 N3 ? ? X A 3 X U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 53 O4 ? ? X A 3 X U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 52 N3 ? ? X A 4 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 52 O4 ? ? X A 4 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 51 N1 ? ? X C 5 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 51 O6 ? ? X C 5 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 51 N2 ? ? X C 5 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 6 N6 ? ? ? 1_555 A A 28 N3 ? ? X A 6 X A 28 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 7 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 7 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 7 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 26 N1 ? ? X C 8 X G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 26 O6 ? ? X C 8 X G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 26 N2 ? ? X C 8 X G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 25 N1 ? ? X U 9 X A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 25 N6 ? ? X U 9 X A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 24 N3 ? ? X G 10 X C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 24 O2 ? ? X G 10 X C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 24 N4 ? ? X G 10 X C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 23 N1 ? ? X U 11 X A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 23 N6 ? ? X U 11 X A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 22 N3 ? ? X A 12 X U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 22 O4 ? ? X A 12 X U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 20 N1 ? ? X C 13 X G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 20 O6 ? ? X C 13 X G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 20 N2 ? ? X C 13 X G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 13 N4 ? ? ? 1_555 A U 21 O4 ? ? X C 13 X U 21 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 15 N1 ? ? ? 1_555 A U 69 O2 ? ? X G 15 X U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? A G 15 O6 ? ? ? 1_555 A U 69 N3 ? ? X G 15 X U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 68 N3 ? ? X G 16 X C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 68 O2 ? ? X G 16 X C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 68 N4 ? ? X G 16 X C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 67 N3 ? ? X G 17 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 67 O2 ? ? X G 17 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 67 N4 ? ? X G 17 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 66 N1 ? ? X C 18 X G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 66 O6 ? ? X C 18 X G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 66 N2 ? ? X C 18 X G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 65 N3 ? ? X A 19 X U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 65 O4 ? ? X A 19 X U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 50 N3 ? ? X G 29 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 50 O2 ? ? X G 29 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 50 N4 ? ? X G 29 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 30 N3 ? ? ? 1_555 A G 49 O6 ? ? X U 30 X G 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog56 hydrog ? ? A U 30 O2 ? ? ? 1_555 A G 49 N1 ? ? X U 30 X G 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 48 N1 ? ? X C 31 X G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 48 O6 ? ? X C 31 X G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 48 N2 ? ? X C 31 X G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 47 N3 ? ? X G 32 X C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 47 O2 ? ? X G 32 X C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 47 N4 ? ? X G 32 X C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 33 N3 ? ? ? 1_555 A G 46 O6 ? ? X U 33 X G 46 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A U 33 O2 ? ? ? 1_555 A G 46 N1 ? ? X U 33 X G 46 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A A 34 N1 ? ? ? 1_555 A U 45 N3 ? ? X A 34 X U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 34 N6 ? ? ? 1_555 A U 45 O4 ? ? X A 34 X U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 44 N1 ? ? X U 35 X A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 35 O4 ? ? ? 1_555 A A 44 N6 ? ? X U 35 X A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 37 N1 ? ? ? 1_555 A A 42 N1 ? ? X G 37 X A 42 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" X G 1 ? ? H62 X A 57 ? ? 1.17 2 1 "O2'" X A 39 ? ? H8 X A 40 ? ? 1.54 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 3 "C1'" X U 65 ? ? "O4'" X U 65 ? ? "C4'" X U 65 ? ? 105.49 109.70 -4.21 0.70 N 2 6 "C1'" X G 56 ? ? "O4'" X G 56 ? ? "C4'" X G 56 ? ? 104.73 109.70 -4.97 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 7 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id X _pdbx_validate_planes.auth_seq_id 14 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.058 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N8V _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N8V _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '0.7 mM [U-13C; U-15N]-Gua RNA (70-MER), 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample.component 'RNA (70-MER)-1' _pdbx_nmr_exptl_sample.concentration 0.7 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-13C; U-15N]-Gua' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.225 _pdbx_nmr_exptl_sample_conditions.pH 6.3 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D 1H-15N TROSY-HMQC' # _pdbx_nmr_refine.entry_id 2N8V _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 Goddard 'chemical shift assignment' Sparky ? 2 'Parisien, Major' 'structure solution' MC-SIM 4.2.2 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 'peak picking' NMRDraw ? 4 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 'data analysis' NMRDraw ? 5 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N8V 'double helix' 2N8V 'a-form double helix' 2N8V 'hairpin loop' 2N8V 'bulge loop' 2N8V 'mismatched base pair' 2N8V 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 55 1_555 0.758 0.046 -1.198 -25.095 -13.434 -2.197 1 X_G1:C55_X X 1 ? X 55 ? 19 1 1 A G 2 1_555 A C 54 1_555 0.587 0.090 -1.246 -32.192 -12.385 -3.277 2 X_G2:C54_X X 2 ? X 54 ? 19 1 1 A A 3 1_555 A U 53 1_555 0.495 0.070 -0.631 -18.477 -8.712 -5.643 3 X_A3:U53_X X 3 ? X 53 ? 20 1 1 A A 4 1_555 A U 52 1_555 0.781 0.095 -0.616 -11.136 -14.062 -4.008 4 X_A4:U52_X X 4 ? X 52 ? 20 1 1 A C 5 1_555 A G 51 1_555 0.414 0.018 0.022 -2.457 3.923 -7.630 5 X_C5:G51_X X 5 ? X 51 ? 19 1 1 A A 6 1_555 A A 28 1_555 -5.912 -4.265 -0.767 42.669 -22.841 -9.951 6 X_A6:A28_X X 6 ? X 28 ? ? 9 1 A G 7 1_555 A C 27 1_555 0.024 -0.182 -1.235 -37.479 22.083 -4.605 7 X_G7:C27_X X 7 ? X 27 ? 19 1 1 A C 8 1_555 A G 26 1_555 0.588 -0.126 -0.191 -8.931 9.520 -1.248 8 X_C8:G26_X X 8 ? X 26 ? 19 1 1 A U 9 1_555 A A 25 1_555 -0.307 0.156 -0.156 -11.530 -1.091 -2.867 9 X_U9:A25_X X 9 ? X 25 ? 20 1 1 A G 10 1_555 A C 24 1_555 -0.700 -0.064 -0.192 -5.163 -3.642 -0.586 10 X_G10:C24_X X 10 ? X 24 ? 19 1 1 A U 11 1_555 A A 23 1_555 -0.874 0.144 -0.129 -18.194 -12.386 0.607 11 X_U11:A23_X X 11 ? X 23 ? 20 1 1 A A 12 1_555 A U 22 1_555 0.241 -0.156 0.491 15.331 1.432 -2.471 12 X_A12:U22_X X 12 ? X 22 ? 20 1 1 A C 13 1_555 A U 21 1_555 1.005 -0.991 1.138 3.989 20.212 -8.253 13 X_C13:U21_X X 13 ? X 21 ? ? ? 1 A G 15 1_555 A U 69 1_555 -2.290 -0.506 0.510 -25.563 26.975 11.165 14 X_G15:U69_X X 15 ? X 69 ? 28 1 1 A G 16 1_555 A C 68 1_555 -0.799 -0.192 -0.065 -0.830 10.050 1.158 15 X_G16:C68_X X 16 ? X 68 ? 19 1 1 A G 17 1_555 A C 67 1_555 -0.810 -0.079 -0.011 10.681 11.279 3.095 16 X_G17:C67_X X 17 ? X 67 ? 19 1 1 A C 18 1_555 A G 66 1_555 0.452 -0.040 -0.317 32.057 21.729 4.686 17 X_C18:G66_X X 18 ? X 66 ? 19 1 1 A A 19 1_555 A U 65 1_555 0.089 -0.038 -0.283 23.857 3.850 9.625 18 X_A19:U65_X X 19 ? X 65 ? 20 1 1 A G 29 1_555 A C 50 1_555 0.851 -0.036 -1.455 -45.976 3.138 -15.309 19 X_G29:C50_X X 29 ? X 50 ? 19 1 1 A U 30 1_555 A G 49 1_555 2.661 -0.701 -0.201 -26.228 4.194 -0.214 20 X_U30:G49_X X 30 ? X 49 ? 28 1 1 A C 31 1_555 A G 48 1_555 0.764 -0.125 -0.052 -8.571 -8.239 2.931 21 X_C31:G48_X X 31 ? X 48 ? 19 1 1 A G 32 1_555 A C 47 1_555 -0.365 -0.127 -0.467 -7.579 -11.167 -6.809 22 X_G32:C47_X X 32 ? X 47 ? 19 1 1 A U 33 1_555 A G 46 1_555 2.448 -0.555 -0.384 -5.363 -8.609 -13.169 23 X_U33:G46_X X 33 ? X 46 ? 28 1 1 A A 34 1_555 A U 45 1_555 0.349 -0.055 -0.206 -2.285 -10.073 -5.283 24 X_A34:U45_X X 34 ? X 45 ? 20 1 1 A U 35 1_555 A A 44 1_555 -0.309 -0.017 -0.101 2.464 0.196 -3.837 25 X_U35:A44_X X 35 ? X 44 ? 20 1 1 A G 36 1_555 A C 43 1_555 -0.614 -0.114 -0.567 -7.827 7.275 -4.781 26 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A G 37 1_555 A A 42 1_555 -1.818 1.338 -0.965 0.877 -17.678 178.776 27 X_G37:A42_X X 37 ? X 42 ? ? 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 55 1_555 A G 2 1_555 A C 54 1_555 0.113 -1.822 3.506 0.333 8.139 30.037 -4.959 -0.147 2.924 15.351 -0.629 31.098 1 XX_G1G2:C54C55_XX X 1 ? X 55 ? X 2 ? X 54 ? 1 A G 2 1_555 A C 54 1_555 A A 3 1_555 A U 53 1_555 -0.344 -1.462 2.900 -1.829 3.856 26.806 -3.952 0.337 2.684 8.251 3.913 27.138 2 XX_G2A3:U53C54_XX X 2 ? X 54 ? X 3 ? X 53 ? 1 A A 3 1_555 A U 53 1_555 A A 4 1_555 A U 52 1_555 0.326 -1.036 3.340 2.655 9.199 28.810 -3.794 -0.100 2.897 17.876 -5.159 30.327 3 XX_A3A4:U52U53_XX X 3 ? X 53 ? X 4 ? X 52 ? 1 A A 4 1_555 A U 52 1_555 A C 5 1_555 A G 51 1_555 0.357 -0.793 3.577 -2.244 11.987 30.000 -3.646 -1.056 3.014 22.045 4.126 32.332 4 XX_A4C5:G51U52_XX X 4 ? X 52 ? X 5 ? X 51 ? 1 A C 5 1_555 A G 51 1_555 A A 6 1_555 A A 28 1_555 -4.270 -0.512 5.892 -69.406 43.381 -4.716 -0.718 -5.028 -2.973 -46.262 -74.015 -81.960 5 XX_C5A6:A28G51_XX X 5 ? X 51 ? X 6 ? X 28 ? 1 A G 7 1_555 A C 27 1_555 A C 8 1_555 A G 26 1_555 -0.217 -1.496 3.039 -1.634 -4.740 26.098 -2.043 0.054 3.262 -10.375 3.576 26.567 6 XX_G7C8:G26C27_XX X 7 ? X 27 ? X 8 ? X 26 ? 1 A C 8 1_555 A G 26 1_555 A U 9 1_555 A A 25 1_555 0.025 -1.769 3.877 1.891 9.629 20.400 -8.256 0.671 2.759 25.378 -4.984 22.615 7 XX_C8U9:A25G26_XX X 8 ? X 26 ? X 9 ? X 25 ? 1 A U 9 1_555 A A 25 1_555 A G 10 1_555 A C 24 1_555 0.223 -1.437 3.367 -0.960 10.239 23.318 -6.020 -0.764 2.509 23.898 2.240 25.457 8 XX_U9G10:C24A25_XX X 9 ? X 25 ? X 10 ? X 24 ? 1 A G 10 1_555 A C 24 1_555 A U 11 1_555 A A 23 1_555 -0.027 -1.358 4.073 -2.470 18.108 27.045 -5.999 -0.439 2.659 34.208 4.667 32.546 9 XX_G10U11:A23C24_XX X 10 ? X 24 ? X 11 ? X 23 ? 1 A U 11 1_555 A A 23 1_555 A A 12 1_555 A U 22 1_555 -0.471 -0.695 2.340 -5.591 2.993 31.902 -1.617 0.139 2.314 5.378 10.047 32.510 10 XX_U11A12:U22A23_XX X 11 ? X 23 ? X 12 ? X 22 ? 1 A A 12 1_555 A U 22 1_555 A C 13 1_555 A U 21 1_555 -1.627 -1.067 3.833 -0.559 39.485 36.353 -3.909 1.779 1.923 49.001 0.693 53.177 11 XX_A12C13:U21U22_XX X 12 ? X 22 ? X 13 ? X 21 ? 1 A G 15 1_555 A U 69 1_555 A G 16 1_555 A C 68 1_555 -0.924 -1.081 3.027 5.155 8.673 29.723 -3.401 2.542 2.432 16.326 -9.703 31.352 12 XX_G15G16:C68U69_XX X 15 ? X 69 ? X 16 ? X 68 ? 1 A G 16 1_555 A C 68 1_555 A G 17 1_555 A C 67 1_555 0.129 -1.360 3.187 -1.779 20.443 21.918 -6.097 -0.551 1.421 43.433 3.780 29.939 13 XX_G16G17:C67C68_XX X 16 ? X 68 ? X 17 ? X 67 ? 1 A G 17 1_555 A C 67 1_555 A C 18 1_555 A G 66 1_555 0.104 -1.304 2.978 -2.183 13.414 29.927 -4.220 -0.496 2.196 24.451 3.979 32.804 14 XX_G17C18:G66C67_XX X 17 ? X 67 ? X 18 ? X 66 ? 1 A C 18 1_555 A G 66 1_555 A A 19 1_555 A U 65 1_555 0.341 -1.981 3.371 5.379 20.776 21.141 -7.269 0.234 1.092 44.465 -11.512 30.038 15 XX_C18A19:U65G66_XX X 18 ? X 66 ? X 19 ? X 65 ? 1 A G 29 1_555 A C 50 1_555 A U 30 1_555 A G 49 1_555 -0.664 -1.510 3.018 -5.083 -8.606 45.514 -1.205 0.423 3.288 -10.968 6.478 46.541 16 XX_G29U30:G49C50_XX X 29 ? X 50 ? X 30 ? X 49 ? 1 A U 30 1_555 A G 49 1_555 A C 31 1_555 A G 48 1_555 -0.407 -1.807 2.799 6.551 -0.588 17.717 -5.246 4.129 2.542 -1.830 -20.379 18.889 17 XX_U30C31:G48G49_XX X 30 ? X 49 ? X 31 ? X 48 ? 1 A C 31 1_555 A G 48 1_555 A G 32 1_555 A C 47 1_555 -0.409 -1.108 3.519 2.624 8.797 23.318 -5.192 1.730 2.855 20.763 -6.194 25.037 18 XX_C31G32:C47G48_XX X 31 ? X 48 ? X 32 ? X 47 ? 1 A G 32 1_555 A C 47 1_555 A U 33 1_555 A G 46 1_555 -0.150 -0.523 3.783 0.789 12.743 42.134 -2.071 0.285 3.487 17.255 -1.068 43.941 19 XX_G32U33:G46C47_XX X 32 ? X 47 ? X 33 ? X 46 ? 1 A U 33 1_555 A G 46 1_555 A A 34 1_555 A U 45 1_555 0.516 -1.034 3.534 2.159 11.132 19.548 -6.747 -0.522 2.610 29.764 -5.773 22.571 20 XX_U33A34:U45G46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A A 34 1_555 A U 45 1_555 A U 35 1_555 A A 44 1_555 0.437 -0.790 3.726 -1.434 10.565 25.863 -4.378 -1.278 3.138 22.430 3.045 27.940 21 XX_A34U35:A44U45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A U 35 1_555 A A 44 1_555 A G 36 1_555 A C 43 1_555 1.117 -0.704 4.453 2.279 12.128 30.643 -3.998 -1.449 3.968 21.868 -4.109 32.979 22 XX_U35G36:C43A44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A G 37 1_555 A A 42 1_555 0.552 -1.897 4.629 -61.874 49.827 -90.400 0.109 -0.938 4.776 -31.048 -38.554 -114.363 23 XX_G36G37:A42C43_XX X 36 ? X 43 ? X 37 ? X 42 ? # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2N8V _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_