HEADER LIPID BINDING PROTEIN 05-NOV-15 2N93 TITLE SOLUTION STRUCTURE OF LCFABP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LCFABP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUCIOLA CERATA; SOURCE 3 ORGANISM_TAXID: 1071519; SOURCE 4 GENE: FABP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET23A KEYWDS LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.TSENG,P.LYU REVDAT 3 14-JUN-23 2N93 1 REMARK REVDAT 2 07-JUN-17 2N93 1 JRNL REVDAT 1 20-JAN-16 2N93 0 JRNL AUTH K.L.TSENG,Y.Z.LEE,Y.R.CHEN,P.C.LYU JRNL TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS OF LIGHT JRNL TITL 2 ORGAN-ASSOCIATED FATTY ACID-BINDING PROTEIN OF TAIWANESE JRNL TITL 3 FIREFLIES. JRNL REF BIOMOL NMR ASSIGN V. 10 71 2016 JRNL REFN ESSN 1874-270X JRNL PMID 26373428 JRNL DOI 10.1007/S12104-015-9640-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 3.2, AMBER REMARK 3 AUTHORS : VARIAN (VNMRJ), CASE, DARDEN, CHEATHAM, III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000104576. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-98% 13C; U-98% 15N] REMARK 210 LCFABP-1, 20 MM SODIUM PHOSPHATE- REMARK 210 2, 100 MM SODIUM CHLORIDE-3, REMARK 210 0.02 % SODIUM AZIDE-4, 50 MM L- REMARK 210 ARG-5, 10 % [U-100% 2H] D2O-6, REMARK 210 90 % H2O-7, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HN(CA)CO; 3D HNCO; 3D REMARK 210 CC(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HBHA(CO)NH; 2D 1H-13C HSQC; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ 3.2, TOPSPIN 3.2, SPARKY REMARK 210 3.114, CNS 1.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 53 OE2 GLU A 69 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 TYR A 19 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 3 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 7 LEU A 10 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 7 VAL A 91 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 7 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 PHE A 127 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 7 PHE A 127 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 9 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 10 TYR A 105 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 2 143.83 -39.95 REMARK 500 1 ALA A 5 -32.15 -150.04 REMARK 500 1 ASN A 15 -4.34 63.09 REMARK 500 1 ASN A 45 55.78 -158.72 REMARK 500 1 ASN A 47 42.79 -71.06 REMARK 500 1 LYS A 48 98.43 -174.05 REMARK 500 1 SER A 55 20.05 -70.44 REMARK 500 1 ILE A 62 -160.72 -125.02 REMARK 500 1 ASN A 64 71.10 47.66 REMARK 500 1 GLU A 85 49.58 -99.62 REMARK 500 1 SER A 87 32.78 -96.33 REMARK 500 1 MET A 121 168.75 170.71 REMARK 500 1 ALA A 123 115.25 -164.35 REMARK 500 2 ALA A 5 -59.27 -135.72 REMARK 500 2 ASN A 15 9.56 58.99 REMARK 500 2 PHE A 16 -36.79 -39.95 REMARK 500 2 ALA A 33 -61.39 -101.59 REMARK 500 2 ASN A 34 9.33 -65.22 REMARK 500 2 PRO A 36 -148.30 -73.12 REMARK 500 2 VAL A 39 92.77 -66.44 REMARK 500 2 ILE A 43 67.51 -111.92 REMARK 500 2 ASN A 45 77.04 -163.80 REMARK 500 2 ASN A 47 25.45 -70.27 REMARK 500 2 LYS A 48 104.18 -165.62 REMARK 500 2 SER A 55 34.13 -72.73 REMARK 500 2 VAL A 63 138.96 -173.08 REMARK 500 2 ASP A 97 11.44 -65.29 REMARK 500 2 ARG A 129 142.89 -39.48 REMARK 500 3 LEU A 4 -63.12 -100.45 REMARK 500 3 ALA A 5 -93.58 -118.61 REMARK 500 3 GLU A 11 -69.71 -103.61 REMARK 500 3 ASN A 15 -0.35 64.06 REMARK 500 3 TYR A 19 -70.81 -84.56 REMARK 500 3 ASN A 34 33.81 -91.10 REMARK 500 3 ASN A 45 63.11 -164.60 REMARK 500 3 SER A 55 20.10 -73.29 REMARK 500 3 ASN A 58 58.09 -96.44 REMARK 500 3 GLU A 65 -140.91 -104.50 REMARK 500 3 SER A 87 43.87 -75.58 REMARK 500 3 LYS A 88 145.57 -178.31 REMARK 500 3 PRO A 96 -31.72 -36.35 REMARK 500 3 ARG A 99 54.59 -115.71 REMARK 500 3 PHE A 107 -170.58 179.92 REMARK 500 3 PHE A 112 99.95 -179.57 REMARK 500 3 LEU A 114 90.45 -69.81 REMARK 500 4 LEU A 4 -74.25 -71.81 REMARK 500 4 ALA A 5 -82.30 -110.78 REMARK 500 4 GLU A 11 -71.13 -98.78 REMARK 500 4 ASN A 15 -4.85 63.50 REMARK 500 4 SER A 35 132.65 -38.79 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 15 PHE A 16 8 146.87 REMARK 500 ASN A 34 SER A 35 9 146.51 REMARK 500 GLY A 111 PHE A 112 9 149.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 126 0.07 SIDE CHAIN REMARK 500 2 TYR A 8 0.10 SIDE CHAIN REMARK 500 2 TYR A 19 0.08 SIDE CHAIN REMARK 500 2 PHE A 127 0.08 SIDE CHAIN REMARK 500 3 TYR A 19 0.10 SIDE CHAIN REMARK 500 3 TYR A 105 0.07 SIDE CHAIN REMARK 500 4 ARG A 103 0.08 SIDE CHAIN REMARK 500 5 PHE A 16 0.08 SIDE CHAIN REMARK 500 5 ARG A 99 0.11 SIDE CHAIN REMARK 500 5 ARG A 103 0.08 SIDE CHAIN REMARK 500 5 TYR A 126 0.09 SIDE CHAIN REMARK 500 6 ARG A 103 0.08 SIDE CHAIN REMARK 500 7 TYR A 19 0.12 SIDE CHAIN REMARK 500 7 PHE A 49 0.09 SIDE CHAIN REMARK 500 7 TYR A 105 0.07 SIDE CHAIN REMARK 500 8 ARG A 129 0.10 SIDE CHAIN REMARK 500 9 PHE A 107 0.08 SIDE CHAIN REMARK 500 9 TYR A 126 0.08 SIDE CHAIN REMARK 500 10 TYR A 8 0.09 SIDE CHAIN REMARK 500 10 ARG A 103 0.08 SIDE CHAIN REMARK 500 10 TYR A 126 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25400 RELATED DB: BMRB DBREF 2N93 A 1 130 UNP G1FKW0 G1FKW0_9COLE 1 130 SEQRES 1 A 130 MET VAL GLN LEU ALA GLY THR TYR LYS LEU GLU LYS ASN SEQRES 2 A 130 GLU ASN PHE GLU GLU TYR LEU ALA ALA LEU GLY VAL PRO SEQRES 3 A 130 GLN ASP SER ILE LYS LYS ALA ASN SER PRO GLY VAL VAL SEQRES 4 A 130 TYR GLU ILE ILE VAL ASN GLY ASN LYS PHE THR PHE LYS SEQRES 5 A 130 SER SER SER GLY MET ASN SER THR LEU ILE VAL ASN GLU SEQRES 6 A 130 GLU VAL GLU GLU VAL LEU GLY THR VAL ASN MET ASN ILE SEQRES 7 A 130 LYS SER PHE THR LYS LEU GLU GLY SER LYS LEU VAL VAL SEQRES 8 A 130 ASN SER GLU LEU PRO ASP GLY ARG LYS GLY THR ARG THR SEQRES 9 A 130 TYR GLU PHE CYS ASP LYS GLY PHE VAL LEU THR MET CYS SEQRES 10 A 130 ALA GLY ASP MET VAL ALA LYS ARG TYR PHE ILE ARG THR HELIX 1 1 ASN A 15 GLY A 24 1 10 HELIX 2 2 PRO A 26 ASN A 34 1 9 SHEET 1 A10 SER A 59 ILE A 62 0 SHEET 2 A10 PHE A 49 SER A 53 -1 N SER A 53 O SER A 59 SHEET 3 A10 TYR A 40 VAL A 44 -1 N GLU A 41 O LYS A 52 SHEET 4 A10 GLY A 6 ASN A 13 -1 N GLY A 6 O VAL A 44 SHEET 5 A10 MET A 121 ARG A 129 -1 O TYR A 126 N LYS A 12 SHEET 6 A10 PHE A 112 ALA A 118 -1 N PHE A 112 O PHE A 127 SHEET 7 A10 ARG A 103 GLU A 106 -1 N THR A 104 O THR A 115 SHEET 8 A10 LYS A 88 GLU A 94 -1 N LEU A 89 O TYR A 105 SHEET 9 A10 MET A 76 LEU A 84 -1 N LYS A 83 O VAL A 90 SHEET 10 A10 GLU A 66 LEU A 71 -1 N VAL A 67 O SER A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1