HEADER TRANSPORT PROTEIN 15-NOV-15 2N9D TITLE STRUCTURE ANALYSIS OF THE TOM1 GAT DOMAIN REVEALS DISTINCT LIGAND- TITLE 2 SPECIFIC CONFORMATIONAL STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TARGET OF MYB PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAT DOMAIN (UNP RESIDUES 215-309); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS TRANSPORT PROTEIN, TOM1, EARLY ENDOSOMES, ALTERNATIVE ESCRT-0 MEMBER, KEYWDS 2 CARGO EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.XIAO,E.F.JEFFREY,A.S.GEOFFREY,D.G.S.CAPELLUTO REVDAT 1 21-SEP-16 2N9D 0 JRNL AUTH S.XIAO,J.F.ELLENA,G.S.ARMSTRONG,D.G.CAPELLUTO JRNL TITL STRUCTURE OF THE GAT DOMAIN OF THE ENDOSOMAL ADAPTER PROTEIN JRNL TITL 2 TOM1. JRNL REF DATA BRIEF V. 7 344 2016 JRNL REFN JRNL PMID 26977434 JRNL DOI 10.1016/J.DIB.2016.02.042 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : YANG, S. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE RCSB ID CODE IS RCSB104586. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 GAT, 50 MM POTASSIUM CHLORIDE, 20 REMARK 210 MM [U-2H] TRIS, 1 MM SODIUM REMARK 210 AZIDE, 50 UM DSS, 1 MM [U-2H] REMARK 210 DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 3000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 210 REMARK 465 PRO A 211 REMARK 465 LEU A 212 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26574 RELATED DB: BMRB DBREF 2N9D A 215 309 UNP O60784 TOM1_HUMAN 215 309 SEQADV 2N9D GLY A 210 UNP O60784 EXPRESSION TAG SEQADV 2N9D PRO A 211 UNP O60784 EXPRESSION TAG SEQADV 2N9D LEU A 212 UNP O60784 EXPRESSION TAG SEQADV 2N9D GLY A 213 UNP O60784 EXPRESSION TAG SEQADV 2N9D SER A 214 UNP O60784 EXPRESSION TAG SEQRES 1 A 100 GLY PRO LEU GLY SER GLU GLN ILE GLY LYS LEU ARG SER SEQRES 2 A 100 GLU LEU GLU MET VAL SER GLY ASN VAL ARG VAL MET SER SEQRES 3 A 100 GLU MET LEU THR GLU LEU VAL PRO THR GLN ALA GLU PRO SEQRES 4 A 100 ALA ASP LEU GLU LEU LEU GLN GLU LEU ASN ARG THR CYS SEQRES 5 A 100 ARG ALA MET GLN GLN ARG VAL LEU GLU LEU ILE PRO GLN SEQRES 6 A 100 ILE ALA ASN GLU GLN LEU THR GLU GLU LEU LEU ILE VAL SEQRES 7 A 100 ASN ASP ASN LEU ASN ASN VAL PHE LEU ARG HIS GLU ARG SEQRES 8 A 100 PHE GLU ARG PHE ARG THR GLY GLN THR HELIX 1 1 GLU A 215 LEU A 241 1 27 HELIX 2 2 GLU A 247 ILE A 272 1 26 HELIX 3 3 ASN A 277 GLY A 307 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1