HEADER PROTEIN BINDING 15-NOV-15 2N9E TITLE STRUCTURE OF SUMO-2 BOUND TO PHOSPHORYLATED RAP80 SIM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRCA1-A COMPLEX SUBUNIT RAP80; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUMO INTERACTING MOTIF (UNP RESIDUES 37-49); COMPND 5 SYNONYM: RECEPTOR-ASSOCIATED PROTEIN 80, RETINOID X RECEPTOR- COMPND 6 INTERACTING PROTEIN 110, UBIQUITIN INTERACTION MOTIF-CONTAINING COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 2; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: SUMO-2, HSMT3, SMT3 HOMOLOG 2, SUMO-3, SENTRIN-2, UBIQUITIN- COMPND 13 LIKE PROTEIN SMT3B, SMT3B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SUMO2, SMT3B, SMT3H2; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SUMO-2-PHOSPHORAP80, SUMO-2-PHOSPHOSIM, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ANAMIKA,L.SPYRACOPOULOS REVDAT 2 23-MAR-16 2N9E 1 JRNL REVDAT 1 20-JAN-16 2N9E 0 JRNL AUTH ANAMIKA,L.SPYRACOPOULOS JRNL TITL MOLECULAR BASIS FOR PHOSPHORYLATION-DEPENDENT SUMO JRNL TITL 2 RECOGNITION BY THE DNA REPAIR PROTEIN RAP80. JRNL REF J.BIOL.CHEM. V. 291 4417 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 26719330 JRNL DOI 10.1074/JBC.M115.705061 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 14 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-15. REMARK 100 THE RCSB ID CODE IS RCSB104587. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM PEPTIDE, 0.4 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HCACO; 3D HNCACB; 2D REMARK 210 1H-13C HSQC AROMATIC; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, TALOS, AMBER 14, REMARK 210 NMRDRAW REMARK 210 METHOD USED : MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 26 HG SER B 28 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR B 47 CG TYR B 47 CD2 0.081 REMARK 500 3 VAL B 86 N VAL B 86 CA 0.122 REMARK 500 8 TYR B 95 CG TYR B 95 CD1 0.105 REMARK 500 9 ARG B 56 CZ ARG B 56 NH2 -0.084 REMARK 500 9 PHE B 87 CG PHE B 87 CD1 0.095 REMARK 500 10 CYS B 48 CB CYS B 48 SG -0.097 REMARK 500 11 HIS B 37 CG HIS B 37 CD2 0.064 REMARK 500 12 ARG B 50 CZ ARG B 50 NH1 -0.080 REMARK 500 13 TYR B 47 CE1 TYR B 47 CZ 0.079 REMARK 500 14 SER B 54 CB SER B 54 OG 0.081 REMARK 500 14 ARG B 56 CZ ARG B 56 NH2 -0.082 REMARK 500 15 GLU B 4 CG GLU B 4 CD 0.098 REMARK 500 18 HIS B 37 CG HIS B 37 CD2 0.055 REMARK 500 19 GLU A 37 CG GLU A 37 CD 0.107 REMARK 500 19 PHE B 60 CG PHE B 60 CD1 0.095 REMARK 500 20 ARG B 50 CZ ARG B 50 NH2 -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR B 47 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 TYR B 47 CG - CD2 - CE2 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 ARG B 59 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 ARG B 61 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 2 PHE A 40 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 2 ASP A 45 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 ASP B 16 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 2 PHE B 32 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 ARG B 36 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG B 56 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 2 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 ARG B 59 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 ARG B 59 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 PHE B 62 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 2 TYR B 95 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 3 ASP A 45 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 3 ASP B 26 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 3 ARG B 36 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 HIS B 37 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 3 TYR B 47 CG - CD2 - CE2 ANGL. DEV. = -6.7 DEGREES REMARK 500 3 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 3 ARG B 50 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 3 ARG B 56 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 3 ARG B 61 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 3 TYR B 95 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 3 TYR B 95 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ASP A 47 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 4 GLU A 49 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 4 VAL B 30 CA - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 4 TYR B 47 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 4 MET B 55 CA - CB - CG ANGL. DEV. = -11.8 DEGREES REMARK 500 4 ARG B 56 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 4 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 4 ARG B 59 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 ARG B 59 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 4 PHE B 87 CB - CG - CD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 4 VAL B 94 CG1 - CB - CG2 ANGL. DEV. = -11.1 DEGREES REMARK 500 4 TYR B 95 CG - CD1 - CE1 ANGL. DEV. = -5.8 DEGREES REMARK 500 5 ASP A 38 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 5 ASP B 3 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 5 VAL B 30 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 5 LYS B 33 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 5 THR B 38 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 5 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 5 ARG B 56 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 PHE B 62 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 5 PRO B 73 N - CD - CG ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 206 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 45 55.51 -143.84 REMARK 500 1 ASP B 26 1.85 -68.55 REMARK 500 1 ASP B 63 26.38 43.80 REMARK 500 1 GLU B 69 -4.16 -53.96 REMARK 500 1 GLN B 90 51.59 -147.03 REMARK 500 2 ASP A 38 17.16 -157.24 REMARK 500 2 ALA A 39 38.98 -67.61 REMARK 500 2 ASP B 3 12.22 -141.29 REMARK 500 2 LYS B 11 80.80 -153.70 REMARK 500 2 GLN B 90 33.50 -150.23 REMARK 500 3 ALA A 39 37.68 -79.00 REMARK 500 4 ALA A 39 38.42 -78.03 REMARK 500 4 VAL A 42 50.71 -113.27 REMARK 500 4 MET B 44 -70.60 -37.14 REMARK 500 4 GLU B 77 20.62 48.90 REMARK 500 4 GLN B 90 49.64 -82.46 REMARK 500 4 VAL B 94 69.34 -64.33 REMARK 500 5 ASP A 38 34.99 -82.15 REMARK 500 5 ALA A 39 41.65 -79.36 REMARK 500 5 GLU B 81 -4.51 74.89 REMARK 500 5 GLN B 90 52.47 -94.50 REMARK 500 6 ASP A 38 44.49 -84.94 REMARK 500 6 ALA B 2 158.17 -48.73 REMARK 500 6 ASN B 15 80.51 -65.74 REMARK 500 6 ASP B 63 17.65 59.02 REMARK 500 6 GLU B 69 -9.70 -57.48 REMARK 500 7 ASP A 38 43.37 -87.44 REMARK 500 7 LYS B 11 -156.60 -146.93 REMARK 500 8 ALA A 39 32.90 -87.77 REMARK 500 8 GLU B 81 2.21 59.57 REMARK 500 9 ASP A 38 0.43 -69.78 REMARK 500 9 ALA A 39 24.59 -69.26 REMARK 500 9 ASP A 45 61.61 -154.53 REMARK 500 9 MET B 55 -9.93 -57.12 REMARK 500 10 ALA A 39 35.78 -77.93 REMARK 500 10 ASP A 45 30.34 -143.50 REMARK 500 10 ASP B 3 33.26 -54.26 REMARK 500 10 VAL B 10 48.40 -71.81 REMARK 500 12 ALA A 39 44.82 -148.92 REMARK 500 12 GLU B 81 -4.51 71.72 REMARK 500 13 ALA A 39 36.14 -75.27 REMARK 500 13 ASP B 3 50.99 -96.45 REMARK 500 13 ASP B 63 48.56 39.60 REMARK 500 14 ASP A 38 17.56 -146.64 REMARK 500 14 ALA A 39 42.34 -83.77 REMARK 500 14 ASP B 3 47.29 -167.08 REMARK 500 14 SER B 54 103.41 -51.48 REMARK 500 15 ASP A 38 40.29 -155.55 REMARK 500 16 ALA A 39 47.33 -89.67 REMARK 500 16 GLU B 81 8.65 46.56 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 25 ASP B 26 1 148.51 REMARK 500 LEU B 53 SER B 54 3 145.88 REMARK 500 VAL B 29 VAL B 30 4 147.57 REMARK 500 ASP A 47 GLY A 48 8 -148.52 REMARK 500 GLY B 92 GLY B 93 9 148.90 REMARK 500 GLY A 48 GLU A 49 10 142.69 REMARK 500 GLU B 81 ASP B 82 11 146.73 REMARK 500 LEU B 53 SER B 54 14 149.96 REMARK 500 LEU B 53 SER B 54 15 149.77 REMARK 500 GLU B 81 ASP B 82 17 149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 40 0.10 SIDE CHAIN REMARK 500 3 ARG B 56 0.09 SIDE CHAIN REMARK 500 3 PHE B 87 0.08 SIDE CHAIN REMARK 500 3 TYR B 95 0.07 SIDE CHAIN REMARK 500 4 ARG B 36 0.08 SIDE CHAIN REMARK 500 4 TYR B 47 0.08 SIDE CHAIN REMARK 500 4 ARG B 50 0.11 SIDE CHAIN REMARK 500 4 ARG B 59 0.10 SIDE CHAIN REMARK 500 6 PHE A 40 0.07 SIDE CHAIN REMARK 500 6 ARG B 36 0.09 SIDE CHAIN REMARK 500 6 ARG B 56 0.10 SIDE CHAIN REMARK 500 9 ARG B 59 0.09 SIDE CHAIN REMARK 500 10 ARG B 50 0.10 SIDE CHAIN REMARK 500 10 PHE B 60 0.08 SIDE CHAIN REMARK 500 11 HIS B 17 0.09 SIDE CHAIN REMARK 500 11 ARG B 36 0.07 SIDE CHAIN REMARK 500 11 TYR B 47 0.09 SIDE CHAIN REMARK 500 11 PHE B 87 0.12 SIDE CHAIN REMARK 500 11 TYR B 95 0.08 SIDE CHAIN REMARK 500 13 PHE B 87 0.11 SIDE CHAIN REMARK 500 15 ARG B 36 0.10 SIDE CHAIN REMARK 500 15 TYR B 95 0.09 SIDE CHAIN REMARK 500 17 GLU B 13 0.07 SIDE CHAIN REMARK 500 17 HIS B 37 0.10 SIDE CHAIN REMARK 500 18 TYR B 47 0.07 SIDE CHAIN REMARK 500 18 TYR B 95 0.09 SIDE CHAIN REMARK 500 19 ARG B 56 0.08 SIDE CHAIN REMARK 500 20 ARG B 50 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 5 ILE A 43 -10.68 REMARK 500 7 GLY B 24 -12.64 REMARK 500 13 PRO B 39 10.92 REMARK 500 15 LEU B 43 -10.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 1 ASP B 63 23.9 L L OUTSIDE RANGE REMARK 500 2 MET B 44 24.3 L L OUTSIDE RANGE REMARK 500 2 GLU B 77 23.1 L L OUTSIDE RANGE REMARK 500 3 THR B 70 23.5 L L OUTSIDE RANGE REMARK 500 3 GLU B 81 24.6 L L OUTSIDE RANGE REMARK 500 4 LEU B 20 24.1 L L OUTSIDE RANGE REMARK 500 5 ARG B 50 24.4 L L OUTSIDE RANGE REMARK 500 5 GLN B 51 24.6 L L OUTSIDE RANGE REMARK 500 5 GLU B 81 22.8 L L OUTSIDE RANGE REMARK 500 6 GLN B 25 24.4 L L OUTSIDE RANGE REMARK 500 7 GLU B 81 24.0 L L OUTSIDE RANGE REMARK 500 8 THR B 70 23.6 L L OUTSIDE RANGE REMARK 500 9 ASP A 38 20.5 L L OUTSIDE RANGE REMARK 500 10 GLU B 79 23.4 L L OUTSIDE RANGE REMARK 500 14 ASN B 14 25.0 L L OUTSIDE RANGE REMARK 500 18 SEP A 46 22.6 L L OUTSIDE RANGE REMARK 500 18 GLU B 81 23.9 L L OUTSIDE RANGE REMARK 500 19 GLU B 81 25.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25901 RELATED DB: BMRB DBREF 2N9E A 37 49 UNP Q96RL1 UIMC1_HUMAN 37 49 DBREF 2N9E B 1 95 UNP P61956 SUMO2_HUMAN 1 95 SEQADV 2N9E ACE A 36 UNP Q96RL1 ACETYLATION SEQADV 2N9E NH2 A 50 UNP Q96RL1 AMIDATION SEQRES 1 A 15 ACE GLU ASP ALA PHE ILE VAL ILE SEP ASP SEP ASP GLY SEQRES 2 A 15 GLU NH2 SEQRES 1 B 95 MET ALA ASP GLU LYS PRO LYS GLU GLY VAL LYS THR GLU SEQRES 2 B 95 ASN ASN ASP HIS ILE ASN LEU LYS VAL ALA GLY GLN ASP SEQRES 3 B 95 GLY SER VAL VAL GLN PHE LYS ILE LYS ARG HIS THR PRO SEQRES 4 B 95 LEU SER LYS LEU MET LYS ALA TYR CYS GLU ARG GLN GLY SEQRES 5 B 95 LEU SER MET ARG GLN ILE ARG PHE ARG PHE ASP GLY GLN SEQRES 6 B 95 PRO ILE ASN GLU THR ASP THR PRO ALA GLN LEU GLU MET SEQRES 7 B 95 GLU ASP GLU ASP THR ILE ASP VAL PHE GLN GLN GLN THR SEQRES 8 B 95 GLY GLY VAL TYR MODRES 2N9E SEP A 44 SER PHOSPHOSERINE MODRES 2N9E SEP A 46 SER PHOSPHOSERINE HET ACE A 36 6 HET SEP A 44 14 HET SEP A 46 14 HET NH2 A 50 3 HETNAM ACE ACETYL GROUP HETNAM SEP PHOSPHOSERINE HETNAM NH2 AMINO GROUP HETSYN SEP PHOSPHONOSERINE FORMUL 1 ACE C2 H4 O FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 NH2 H2 N HELIX 1 1 PRO B 39 GLY B 52 1 14 HELIX 2 2 SER B 54 ILE B 58 5 5 SHEET 1 A 6 PHE A 40 ILE A 43 0 SHEET 2 A 6 VAL B 29 LYS B 35 1 O GLN B 31 N ILE A 41 SHEET 3 A 6 HIS B 17 ALA B 23 -1 N ILE B 18 O ILE B 34 SHEET 4 A 6 THR B 83 PHE B 87 1 O ILE B 84 N LYS B 21 SHEET 5 A 6 ARG B 59 PHE B 62 -1 N ARG B 61 O ASP B 85 SHEET 6 A 6 GLN B 65 PRO B 66 -1 O GLN B 65 N PHE B 62 LINK C ACE A 36 N GLU A 37 1555 1555 1.36 LINK C ILE A 43 N SEP A 44 1555 1555 1.39 LINK C SEP A 44 N ASP A 45 1555 1555 1.30 LINK C ASP A 45 N SEP A 46 1555 1555 1.33 LINK C SEP A 46 N ASP A 47 1555 1555 1.36 LINK C GLU A 49 N NH2 A 50 1555 1555 1.29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C ACE A 36 12.333 15.381 -44.991 1.00 0.00 C HETATM 2 O ACE A 36 12.134 14.745 -43.990 1.00 0.00 O HETATM 3 CH3 ACE A 36 13.238 16.573 -44.995 1.00 0.00 C HETATM 4 H1 ACE A 36 14.032 16.336 -45.703 1.00 0.00 H HETATM 5 H2 ACE A 36 12.723 17.510 -45.206 1.00 0.00 H HETATM 6 H3 ACE A 36 13.781 16.573 -44.050 1.00 0.00 H