HEADER LIGASE 01-DEC-15 2N9O TITLE SOLUTION STRUCTURE OF RNF126 N-TERMINAL ZINC FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF126; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL ZINC FINGER DOMAIN RESIDUES 1-40; COMPND 5 SYNONYM: RING FINGER PROTEIN 126; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF126; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS ZINC FINGER, E3 LIGASE, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.MARTINEZ-LUMBRERAS,E.M.KRYSZTOFINSKA,A.THAPALIYA,R.L.ISAACSON REVDAT 3 14-JUN-23 2N9O 1 REMARK SEQADV LINK REVDAT 2 01-JUN-16 2N9O 1 JRNL REVDAT 1 25-MAY-16 2N9O 0 JRNL AUTH E.M.KRYSZTOFINSKA,S.MARTINEZ-LUMBRERAS,A.THAPALIYA, JRNL AUTH 2 N.J.EVANS,S.HIGH,R.L.ISAACSON JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE E3 LIGASE, JRNL TITL 2 RNF126. JRNL REF SCI REP V. 6 26433 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27193484 JRNL DOI 10.1038/SREP26433 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, ARIA 2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN WATER WITH DEFAULT REMARK 3 PARAMETRES REMARK 4 REMARK 4 2N9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000104597. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 350-750 UM [U-99% 13C; U-99% REMARK 210 15N] RNF126, 350-750 UM ZINC ION, REMARK 210 10 MM POTASSIUM PHOSPHATE, 100 REMARK 210 MM SODIUM CHLORIDE, 250 UM TCEP, REMARK 210 10 UM DSS, 90% H2O/10% D2O; 350- REMARK 210 750 UM [U-99% 13C; U-99% 15N] REMARK 210 RNF126, 350-750 UM ZINC ION, 10 REMARK 210 MM POTASSIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 250 UM TCEP, 10 REMARK 210 UM DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, NMRPIPE, NMRDRAW, REMARK 210 CCPNMR ANALYSIS 2.3, ARIA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 -80.13 69.44 REMARK 500 1 ALA A 4 -172.74 62.95 REMARK 500 1 PRO A 6 47.54 -76.32 REMARK 500 1 PHE A 36 85.22 -67.20 REMARK 500 2 SER A 5 83.71 62.21 REMARK 500 2 PHE A 36 84.13 -67.28 REMARK 500 3 MET A 1 -82.54 67.96 REMARK 500 4 HIS A 7 140.77 72.15 REMARK 500 4 ILE A 28 -168.58 -109.37 REMARK 500 4 PHE A 36 86.05 -68.48 REMARK 500 5 ALA A 4 -42.68 -148.48 REMARK 500 6 PRO A 6 84.46 -62.52 REMARK 500 6 PHE A 36 82.10 -67.83 REMARK 500 7 SER A 0 -88.90 64.11 REMARK 500 8 ALA A 2 -38.88 -163.13 REMARK 500 8 SER A 5 129.00 71.04 REMARK 500 8 PRO A 6 34.71 -77.78 REMARK 500 8 HIS A 7 125.83 68.57 REMARK 500 8 PHE A 36 90.01 -69.77 REMARK 500 9 GLU A 3 119.29 71.59 REMARK 500 9 HIS A 7 133.17 70.43 REMARK 500 10 ALA A 4 -45.50 -139.34 REMARK 500 10 ARG A 23 99.48 -69.97 REMARK 500 11 SER A 0 78.58 50.04 REMARK 500 11 MET A 1 48.92 -79.88 REMARK 500 11 ARG A 31 -60.70 -98.47 REMARK 500 11 PHE A 36 85.41 -68.55 REMARK 500 12 GLU A 3 -65.97 -150.19 REMARK 500 12 ALA A 4 -86.01 62.49 REMARK 500 12 PHE A 36 85.33 -68.01 REMARK 500 13 MET A 1 -66.98 70.39 REMARK 500 13 ALA A 2 45.62 -99.41 REMARK 500 13 ALA A 4 32.95 -93.49 REMARK 500 13 PHE A 36 82.80 -69.00 REMARK 500 14 MET A 1 -60.35 -92.98 REMARK 500 14 ALA A 4 -178.44 62.03 REMARK 500 14 HIS A 7 126.76 -170.80 REMARK 500 14 PHE A 36 82.95 -68.92 REMARK 500 15 MET A 1 74.65 59.08 REMARK 500 16 ALA A 2 59.51 -158.70 REMARK 500 16 GLU A 3 -63.28 73.23 REMARK 500 16 SER A 5 93.52 64.14 REMARK 500 16 PRO A 6 -164.33 -74.03 REMARK 500 16 ILE A 28 -169.07 -115.41 REMARK 500 17 ALA A 2 33.23 -140.85 REMARK 500 17 GLU A 3 -83.83 -98.22 REMARK 500 17 ALA A 4 -51.12 -159.16 REMARK 500 17 SER A 5 74.90 -170.73 REMARK 500 18 ALA A 2 -62.12 -171.82 REMARK 500 18 GLU A 3 -100.04 -170.52 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 110.2 REMARK 620 3 CYS A 29 SG 108.8 111.1 REMARK 620 4 CYS A 32 SG 109.2 110.9 106.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25913 RELATED DB: BMRB REMARK 900 RELATED ID: 2N9P RELATED DB: PDB DBREF 2N9O A 1 40 UNP Q9BV68 RN126_HUMAN 1 40 SEQADV 2N9O GLY A -1 UNP Q9BV68 EXPRESSION TAG SEQADV 2N9O SER A 0 UNP Q9BV68 EXPRESSION TAG SEQRES 1 A 42 GLY SER MET ALA GLU ALA SER PRO HIS PRO GLY ARG TYR SEQRES 2 A 42 PHE CYS HIS CYS CYS SER VAL GLU ILE VAL PRO ARG LEU SEQRES 3 A 42 PRO ASP TYR ILE CYS PRO ARG CYS GLU SER GLY PHE ILE SEQRES 4 A 42 GLU GLU LEU HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ SHEET 1 A 3 VAL A 18 ILE A 20 0 SHEET 2 A 3 TYR A 11 CYS A 13 -1 N TYR A 11 O ILE A 20 SHEET 3 A 3 ILE A 37 GLU A 39 -1 O GLU A 38 N PHE A 12 LINK SG CYS A 13 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 16 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 29 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 32 ZN ZN A 101 1555 1555 2.29 SITE 1 AC1 4 CYS A 13 CYS A 16 CYS A 29 CYS A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1