HEADER DNA 02-DEC-15 2N9Q TITLE PHOTOSWITCHABLE G-QUADRUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS QUADRUPLEX, PHOTOSWITCH, DNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.THEVARPADAM,I.BESSI,O.BINAS,D.P.N.GONCALVES,C.SLAVOV,H.R.A.JONKER, AUTHOR 2 C.RICHTER,J.WACHTVEITL,H.SCHWALBE,A.HECKEL REVDAT 3 14-JUN-23 2N9Q 1 REMARK LINK REVDAT 2 02-MAR-16 2N9Q 1 JRNL REVDAT 1 17-FEB-16 2N9Q 0 JRNL AUTH J.THEVARPADAM,I.BESSI,O.BINAS,D.P.GONCALVES,C.SLAVOV, JRNL AUTH 2 H.R.JONKER,C.RICHTER,J.WACHTVEITL,H.SCHWALBE,A.HECKEL JRNL TITL PHOTORESPONSIVE FORMATION OF AN INTERMOLECULAR MINIMAL JRNL TITL 2 G-QUADRUPLEX MOTIF. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 55 2738 2016 JRNL REFN ISSN 1433-7851 JRNL PMID 26805928 JRNL DOI 10.1002/ANIE.201510269 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, ARIA 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WITH CARTESIAN REMARK 3 ANGLE DYNAMICS REMARK 4 REMARK 4 2N9Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000104599. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 71 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 550 UM DNA (5' REMARK 210 -D(*GP*GP*(AZW)P*GP*G)-3'), 25 REMARK 210 MM TRIS-HCL, 50 MM KCL, 90% H2O/ REMARK 210 10% D2O; 550 UM DNA (5'-D(*GP*GP* REMARK 210 (AZW)P*GP*G)-3'), 25 MM TRIS-HCL, REMARK 210 50 MM KCL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-13C HMBC; REMARK 210 2D 1H-31P TOCSY; 2D 1H-1H P.E. REMARK 210 COSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, TOPSPIN 3.2, SPARKY REMARK 210 3.114 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 77.6 REMARK 620 3 DG A 4 O6 114.5 76.3 REMARK 620 4 DG A 5 O6 59.3 109.4 75.1 REMARK 620 5 DG B 1 O6 87.3 164.9 110.7 61.6 REMARK 620 6 DG B 2 O6 164.4 118.0 73.1 112.6 77.1 REMARK 620 7 DG B 4 O6 113.5 74.2 115.1 169.9 112.7 72.3 REMARK 620 8 DG B 5 O6 60.7 111.5 168.1 93.5 59.6 109.1 76.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 5 O6 62.6 REMARK 620 3 DG B 1 O6 86.9 64.3 REMARK 620 4 DG B 5 O6 63.4 102.6 61.7 REMARK 620 5 DG C 1 O6 123.8 82.9 117.7 172.7 REMARK 620 6 DG C 5 O6 85.6 108.1 171.3 118.2 63.6 REMARK 620 7 DG D 1 O6 119.7 168.3 126.2 88.0 86.9 61.9 REMARK 620 8 DG D 5 O6 170.3 116.1 84.1 108.8 64.2 103.7 63.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 1 O6 REMARK 620 2 DG C 2 O6 78.2 REMARK 620 3 DG C 4 O6 112.2 75.6 REMARK 620 4 DG C 5 O6 63.1 114.0 73.1 REMARK 620 5 DG D 1 O6 88.2 166.3 112.1 60.2 REMARK 620 6 DG D 2 O6 160.7 120.2 70.6 101.3 73.5 REMARK 620 7 DG D 4 O6 114.5 74.9 116.8 168.8 109.5 78.5 REMARK 620 8 DG D 5 O6 62.2 110.2 169.7 96.6 60.5 111.7 73.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25915 RELATED DB: BMRB DBREF 2N9Q A 1 5 PDB 2N9Q 2N9Q 1 5 DBREF 2N9Q B 1 5 PDB 2N9Q 2N9Q 1 5 DBREF 2N9Q C 1 5 PDB 2N9Q 2N9Q 1 5 DBREF 2N9Q D 1 5 PDB 2N9Q 2N9Q 1 5 SEQRES 1 A 5 DG DG AZW DG DG SEQRES 1 B 5 DG DG AZW DG DG SEQRES 1 C 5 DG DG AZW DG DG SEQRES 1 D 5 DG DG AZW DG DG HET AZW A 3 33 HET AZW B 3 33 HET AZW C 3 33 HET AZW D 3 33 HET K A 101 1 HET K A 102 1 HET K C 101 1 HETNAM AZW 4-{(E)-[4-(HYDROXYMETHYL)PHENYL]DIAZENYL}BENZYL HETNAM 2 AZW DIHYDROGEN PHOSPHATE HETNAM K POTASSIUM ION FORMUL 1 AZW 4(C14 H15 N2 O5 P) FORMUL 5 K 3(K 1+) LINK O3' DG A 2 P AZW A 3 1555 1555 1.60 LINK O3' AZW A 3 P DG A 4 1555 1555 1.61 LINK O3' DG B 2 P AZW B 3 1555 1555 1.61 LINK O3' AZW B 3 P DG B 4 1555 1555 1.60 LINK O3' DG C 2 P AZW C 3 1555 1555 1.60 LINK O3' AZW C 3 P DG C 4 1555 1555 1.61 LINK O3' DG D 2 P AZW D 3 1555 1555 1.61 LINK O3' AZW D 3 P DG D 4 1555 1555 1.61 LINK O6 DG A 1 K K A 101 1555 1555 2.74 LINK O6 DG A 1 K K A 102 1555 1555 2.72 LINK O6 DG A 2 K K A 101 1555 1555 2.63 LINK O6 DG A 4 K K A 101 1555 1555 2.66 LINK O6 DG A 5 K K A 101 1555 1555 3.13 LINK O6 DG A 5 K K A 102 1555 1555 2.91 LINK K K A 101 O6 DG B 1 1555 1555 2.72 LINK K K A 101 O6 DG B 2 1555 1555 2.66 LINK K K A 101 O6 DG B 4 1555 1555 2.66 LINK K K A 101 O6 DG B 5 1555 1555 3.12 LINK K K A 102 O6 DG B 1 1555 1555 2.76 LINK K K A 102 O6 DG B 5 1555 1555 2.93 LINK K K A 102 O6 DG C 1 1555 1555 2.78 LINK K K A 102 O6 DG C 5 1555 1555 3.09 LINK K K A 102 O6 DG D 1 1555 1555 2.73 LINK K K A 102 O6 DG D 5 1555 1555 2.91 LINK O6 DG C 1 K K C 101 1555 1555 2.69 LINK O6 DG C 2 K K C 101 1555 1555 2.77 LINK O6 DG C 4 K K C 101 1555 1555 2.61 LINK O6 DG C 5 K K C 101 1555 1555 3.19 LINK K K C 101 O6 DG D 1 1555 1555 2.76 LINK K K C 101 O6 DG D 2 1555 1555 2.68 LINK K K C 101 O6 DG D 4 1555 1555 2.63 LINK K K C 101 O6 DG D 5 1555 1555 3.13 SITE 1 AC1 8 DG A 1 DG A 2 DG A 4 DG A 5 SITE 2 AC1 8 DG B 1 DG B 2 DG B 4 DG B 5 SITE 1 AC2 8 DG A 1 DG A 5 DG B 1 DG B 5 SITE 2 AC2 8 DG C 1 DG C 5 DG D 1 DG D 5 SITE 1 AC3 8 DG C 1 DG C 2 DG C 4 DG C 5 SITE 2 AC3 8 DG D 1 DG D 2 DG D 4 DG D 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1