HEADER LYASE ACTIVATOR 16-DEC-15 2NA0 TITLE NMR STRUCTURE OF GUANYLYL CYCLASE ACTIVATOR PROTEIN 1 (GCAP1) MUTANT TITLE 2 V77E IN A CA2+-FREE/MG2+-BOUND ACTIVATOR STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLYL CYCLASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GCAP 1, GUANYLATE CYCLASE ACTIVATOR 1A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GUCA1A, GCAP1, GUCA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11 KEYWDS SIGNAL TRANSDUCTION, ACTIVATOR STATE, LYASE ACTIVATOR EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.LIM,J.B.AMES REVDAT 4 14-JUN-23 2NA0 1 REMARK SEQADV LINK REVDAT 3 16-MAR-16 2NA0 1 JRNL REVDAT 2 06-JAN-16 2NA0 1 JRNL REVDAT 1 30-DEC-15 2NA0 0 JRNL AUTH S.LIM,I.V.PESHENKO,E.V.OLSHEVSKAYA,A.M.DIZHOOR,J.B.AMES JRNL TITL STRUCTURE OF GUANYLYL CYCLASE ACTIVATOR PROTEIN 1 (GCAP1) JRNL TITL 2 MUTANT V77E IN A CA2+-FREE/MG2+-BOUND ACTIVATOR STATE. JRNL REF J.BIOL.CHEM. V. 291 4429 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 26703466 JRNL DOI 10.1074/JBC.M115.696161 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, XPLOR-NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA, REMARK 3 G.M.CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A TEMPLATE HOMOLOGY MODEL STRUCTURE WAS REMARK 3 REFINED USING A REFINEMENT PROTOCOL OF XPLOR-NIH WITH RESTRAINTS REMARK 3 FROM EXPERIMENTAL DATA AND, PRIMARY AND SECONDARY SEQUENTIAL REMARK 3 ANALYSIS. REMARK 4 REMARK 4 2NA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000104609. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 320 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 5 MM [U-100% 2H] TRIS, 5 MM [U REMARK 210 -100% 2H] DTT, 0.5 MM [U-100% REMARK 210 15N] GCAP1 (V77E) MUTANT, 5 MM REMARK 210 MGCL2, 93 % H2O, 7 % [U-100% 2H] REMARK 210 D2O, 93% H2O/7% D2O; 5 MM [U-100% REMARK 210 2H] TRIS, 5 MM [U-100% 2H] DTT, REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 GCAP1 (V77E) MUTANT, 5 MM MGCL2, REMARK 210 93 % H2O, 7 % [U-100% 2H] D2O, REMARK 210 93% H2O/7% D2O; 5 MM [U-100% 2H] REMARK 210 TRIS, 5 MM [U-100% 2H] DTT, 0.5 REMARK 210 MM [U-13C; U-15N; U-2H] GCAP1 REMARK 210 (V77E) MUTANT, 5 MM MGCL2, 93 % REMARK 210 H2O, 7 % [U-100% 2H] D2O, 93% REMARK 210 H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 GLU A 187 REMARK 465 GLN A 188 REMARK 465 ASP A 189 REMARK 465 GLU A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 ALA A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 465 GLU A 197 REMARK 465 THR A 198 REMARK 465 GLU A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 ALA A 203 REMARK 465 ASP A 204 REMARK 465 GLY A 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 90 HH21 ARG A 93 1.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 15 15.76 53.68 REMARK 500 1 THR A 16 24.42 -172.40 REMARK 500 1 PRO A 30 -179.39 -46.69 REMARK 500 1 LEU A 45 47.76 74.39 REMARK 500 1 PRO A 50 -93.42 -85.00 REMARK 500 1 PHE A 65 -69.45 81.76 REMARK 500 1 LEU A 84 -149.74 -113.57 REMARK 500 1 LYS A 85 -24.77 -147.37 REMARK 500 1 VAL A 101 80.35 39.98 REMARK 500 1 CYS A 106 111.51 55.96 REMARK 500 1 ILE A 119 -70.60 -75.68 REMARK 500 1 ARG A 120 139.85 -174.61 REMARK 500 1 ILE A 122 26.91 -73.76 REMARK 500 1 ASP A 127 162.68 61.24 REMARK 500 1 THR A 129 -40.43 -29.28 REMARK 500 1 MET A 130 -48.04 -141.81 REMARK 500 1 ASP A 144 9.48 47.90 REMARK 500 1 VAL A 145 15.42 41.93 REMARK 500 1 SER A 152 -137.02 -99.32 REMARK 500 1 LYS A 162 -82.83 -7.37 REMARK 500 1 LEU A 176 -62.96 -107.69 REMARK 500 2 ASN A 3 -145.98 62.40 REMARK 500 2 ILE A 4 71.67 -114.09 REMARK 500 2 THR A 16 -17.34 70.65 REMARK 500 2 PRO A 30 37.85 -77.65 REMARK 500 2 GLN A 33 78.62 59.73 REMARK 500 2 LYS A 46 -112.10 33.34 REMARK 500 2 ASN A 47 -82.59 -128.60 REMARK 500 2 LEU A 48 92.18 62.99 REMARK 500 2 SER A 49 70.71 49.27 REMARK 500 2 GLN A 54 -70.22 -53.08 REMARK 500 2 ASN A 66 -157.90 40.67 REMARK 500 2 ASP A 100 -165.29 -174.96 REMARK 500 2 SER A 126 121.05 78.55 REMARK 500 2 SER A 128 -149.79 39.44 REMARK 500 2 MET A 130 -171.36 43.24 REMARK 500 2 ASP A 144 -20.40 65.79 REMARK 500 2 VAL A 145 177.25 44.46 REMARK 500 2 ASP A 148 18.76 40.26 REMARK 500 2 LYS A 162 150.52 -37.81 REMARK 500 2 ASP A 163 131.55 -36.92 REMARK 500 2 MET A 165 -77.14 -60.46 REMARK 500 3 ASN A 3 40.52 35.85 REMARK 500 3 ILE A 4 -142.36 -83.53 REMARK 500 3 THR A 16 136.27 60.09 REMARK 500 3 CYS A 29 148.37 81.89 REMARK 500 3 GLN A 33 178.33 50.27 REMARK 500 3 LYS A 46 24.46 -170.20 REMARK 500 3 LEU A 48 -110.10 49.20 REMARK 500 3 ASP A 68 -154.69 51.37 REMARK 500 REMARK 500 THIS ENTRY HAS 319 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26688 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A MYRISTOYL GROUP (DERIVED FROM MYRISTIC ACID) IS COVALENTLY REMARK 999 ATTACHED TO THE N-TERMINUS VIA AN AMIDE BOND. DBREF 2NA0 A 2 205 UNP P46065 GUC1A_BOVIN 2 205 SEQADV 2NA0 MYR A 1 UNP P46065 SEE REMARK 999 SEQADV 2NA0 GLU A 77 UNP P46065 VAL 77 ENGINEERED MUTATION SEQRES 1 A 205 MYR GLY ASN ILE MET ASP GLY LYS SER VAL GLU GLU LEU SEQRES 2 A 205 SER SER THR GLU CYS HIS GLN TRP TYR LYS LYS PHE MET SEQRES 3 A 205 THR GLU CYS PRO SER GLY GLN LEU THR LEU TYR GLU PHE SEQRES 4 A 205 ARG GLN PHE PHE GLY LEU LYS ASN LEU SER PRO TRP ALA SEQRES 5 A 205 SER GLN TYR VAL GLU GLN MET PHE GLU THR PHE ASP PHE SEQRES 6 A 205 ASN LYS ASP GLY TYR ILE ASP PHE MET GLU TYR GLU ALA SEQRES 7 A 205 ALA LEU SER LEU VAL LEU LYS GLY LYS VAL GLU GLN LYS SEQRES 8 A 205 LEU ARG TRP TYR PHE LYS LEU TYR ASP VAL ASP GLY ASN SEQRES 9 A 205 GLY CYS ILE ASP ARG ASP GLU LEU LEU THR ILE ILE ARG SEQRES 10 A 205 ALA ILE ARG ALA ILE ASN PRO CYS SER ASP SER THR MET SEQRES 11 A 205 THR ALA GLU GLU PHE THR ASP THR VAL PHE SER LYS ILE SEQRES 12 A 205 ASP VAL ASN GLY ASP GLY GLU LEU SER LEU GLU GLU PHE SEQRES 13 A 205 MET GLU GLY VAL GLN LYS ASP GLN MET LEU LEU ASP THR SEQRES 14 A 205 LEU THR ARG SER LEU ASP LEU THR ARG ILE VAL ARG ARG SEQRES 15 A 205 LEU GLN ASN GLY GLU GLN ASP GLU GLU GLY ALA SER GLY SEQRES 16 A 205 ARG GLU THR GLU ALA ALA GLU ALA ASP GLY HET MYR A 1 42 HETNAM MYR MYRISTIC ACID FORMUL 1 MYR C14 H28 O2 HELIX 1 1 GLY A 7 SER A 15 1 9 HELIX 2 2 THR A 16 CYS A 29 1 14 HELIX 3 3 LEU A 36 GLY A 44 1 9 HELIX 4 4 PRO A 50 PHE A 65 1 16 HELIX 5 5 PHE A 73 LEU A 84 1 12 HELIX 6 6 LYS A 87 ASP A 100 1 14 HELIX 7 7 ASP A 108 ARG A 120 1 13 HELIX 8 8 ALA A 132 ASP A 144 1 13 HELIX 9 9 VAL A 145 GLY A 147 5 3 HELIX 10 10 LEU A 153 LYS A 162 1 10 HELIX 11 11 ASP A 163 LEU A 174 1 12 HELIX 12 12 ARG A 178 ASN A 185 1 8 SHEET 1 A 2 GLN A 33 THR A 35 0 SHEET 2 A 2 TYR A 70 ASP A 72 -1 O ILE A 71 N LEU A 34 LINK C1 MYR A 1 N GLY A 2 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 C1 MYR A 1 -11.855 -4.569 0.842 1.00 0.00 C HETATM 2 O1 MYR A 1 -12.982 -5.019 0.631 1.00 0.00 O HETATM 3 C2 MYR A 1 -11.540 -3.825 2.134 1.00 0.00 C HETATM 4 C3 MYR A 1 -10.240 -4.366 2.746 1.00 0.00 C HETATM 5 C4 MYR A 1 -10.010 -3.748 4.138 1.00 0.00 C HETATM 6 C5 MYR A 1 -9.334 -2.362 4.008 1.00 0.00 C HETATM 7 C6 MYR A 1 -7.805 -2.503 4.128 1.00 0.00 C HETATM 8 C7 MYR A 1 -7.107 -1.246 3.558 1.00 0.00 C HETATM 9 C8 MYR A 1 -6.739 -1.461 2.084 1.00 0.00 C HETATM 10 C9 MYR A 1 -5.914 -0.266 1.572 1.00 0.00 C HETATM 11 C10 MYR A 1 -6.762 1.034 1.596 1.00 0.00 C HETATM 12 C11 MYR A 1 -6.418 1.894 2.836 1.00 0.00 C HETATM 13 C12 MYR A 1 -7.625 2.753 3.238 1.00 0.00 C HETATM 14 C13 MYR A 1 -7.966 3.729 2.111 1.00 0.00 C HETATM 15 C14 MYR A 1 -9.159 4.596 2.526 1.00 0.00 C HETATM 16 H21 MYR A 1 -11.426 -2.773 1.921 1.00 0.00 H HETATM 17 H22 MYR A 1 -12.353 -3.964 2.830 1.00 0.00 H HETATM 18 H31 MYR A 1 -10.309 -5.442 2.839 1.00 0.00 H HETATM 19 H32 MYR A 1 -9.409 -4.118 2.099 1.00 0.00 H HETATM 20 H41 MYR A 1 -10.959 -3.637 4.644 1.00 0.00 H HETATM 21 H42 MYR A 1 -9.382 -4.408 4.721 1.00 0.00 H HETATM 22 H51 MYR A 1 -9.576 -1.920 3.052 1.00 0.00 H HETATM 23 H52 MYR A 1 -9.689 -1.716 4.796 1.00 0.00 H HETATM 24 H61 MYR A 1 -7.545 -2.615 5.172 1.00 0.00 H HETATM 25 H62 MYR A 1 -7.484 -3.384 3.590 1.00 0.00 H HETATM 26 H71 MYR A 1 -7.767 -0.393 3.639 1.00 0.00 H HETATM 27 H72 MYR A 1 -6.205 -1.049 4.121 1.00 0.00 H HETATM 28 H81 MYR A 1 -6.156 -2.363 1.985 1.00 0.00 H HETATM 29 H82 MYR A 1 -7.642 -1.552 1.497 1.00 0.00 H HETATM 30 H91 MYR A 1 -5.036 -0.149 2.193 1.00 0.00 H HETATM 31 H92 MYR A 1 -5.599 -0.471 0.558 1.00 0.00 H HETATM 32 H101 MYR A 1 -6.556 1.609 0.704 1.00 0.00 H HETATM 33 H102 MYR A 1 -7.815 0.784 1.611 1.00 0.00 H HETATM 34 H111 MYR A 1 -6.147 1.253 3.662 1.00 0.00 H HETATM 35 H112 MYR A 1 -5.584 2.540 2.601 1.00 0.00 H HETATM 36 H121 MYR A 1 -8.474 2.113 3.428 1.00 0.00 H HETATM 37 H122 MYR A 1 -7.389 3.307 4.134 1.00 0.00 H HETATM 38 H131 MYR A 1 -7.115 4.363 1.912 1.00 0.00 H HETATM 39 H132 MYR A 1 -8.219 3.177 1.218 1.00 0.00 H HETATM 40 H141 MYR A 1 -9.932 3.969 2.943 1.00 0.00 H HETATM 41 H142 MYR A 1 -9.542 5.116 1.663 1.00 0.00 H HETATM 42 H143 MYR A 1 -8.840 5.314 3.267 1.00 0.00 H