HEADER SIGNALING PROTEIN 23-DEC-15 2NAE TITLE MEMBRANE-BOUND MOUSE CD28 CYTOPLASMIC TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL-SPECIFIC SURFACE GLYCOPROTEIN CD28; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 177-218; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CD28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-41A(+) KEYWDS CD28, MEMBRANE BOUND PROTEIN, BICELLE, COSTIMULATION, TCR, SIGNALING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.LI,C.XU,W.PAN REVDAT 5 15-MAY-24 2NAE 1 REMARK REVDAT 4 14-JUN-23 2NAE 1 REMARK REVDAT 3 24-AUG-22 2NAE 1 JRNL REMARK SEQADV REVDAT 2 01-NOV-17 2NAE 1 JRNL REVDAT 1 21-DEC-16 2NAE 0 JRNL AUTH W.YANG,W.PAN,S.CHEN,N.TRENDEL,S.JIANG,F.XIAO,M.XUE,W.WU, JRNL AUTH 2 Z.PENG,X.LI,H.JI,X.LIU,H.JIANG,H.WANG,H.SHEN,O.DUSHEK,H.LI, JRNL AUTH 3 C.XU JRNL TITL DYNAMIC REGULATION OF CD28 CONFORMATION AND SIGNALING BY JRNL TITL 2 CHARGED LIPIDS AND IONS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 24 1081 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 29058713 JRNL DOI 10.1038/NSMB.3489 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, X-PLOR NIH 2.32 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000104621. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] MCD28CD-1, REMARK 210 100 MM POPG-2, 125 MM DHPC-3, 20 REMARK 210 MM SODIUM PHOSPHATE-4, 10 % [U- REMARK 210 2H] D2O-5, 90 % H2O-6, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY (NOES TO REMARK 210 LIPID); 3D 1H-13C NOESY (METHYL; REMARK 210 DOUBLE 13C-FILTER); 2D 1H-13C REMARK 210 NOESY (AROMATIC; DOUBLE 13C- REMARK 210 FILTER); 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HBHA(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.2.2, KUJIRA REMARK 210 0.9843, X-PLOR NIH 2.32 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 PRO A 43 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 145.70 62.49 REMARK 500 1 ASN A 3 -140.78 -86.71 REMARK 500 1 ARG A 6 137.81 44.30 REMARK 500 1 LEU A 9 43.90 -174.84 REMARK 500 1 LEU A 10 100.30 21.11 REMARK 500 1 GLN A 11 157.52 65.28 REMARK 500 1 SER A 12 92.26 52.69 REMARK 500 1 MET A 15 74.26 14.01 REMARK 500 1 ASN A 16 150.13 -37.75 REMARK 500 1 MET A 17 -63.33 87.15 REMARK 500 1 THR A 25 -78.59 -113.01 REMARK 500 1 ARG A 26 152.14 55.88 REMARK 500 1 LYS A 27 147.04 59.41 REMARK 500 1 GLN A 30 69.61 26.81 REMARK 500 1 TYR A 32 104.68 41.56 REMARK 500 1 PRO A 34 107.20 -54.45 REMARK 500 1 ALA A 35 -84.31 -101.84 REMARK 500 1 ARG A 36 89.64 51.49 REMARK 500 1 ASP A 37 -90.14 -61.06 REMARK 500 1 PHE A 38 23.62 -176.45 REMARK 500 1 TYR A 41 19.77 41.30 REMARK 500 1 ARG A 42 119.93 14.62 REMARK 500 2 THR A 2 148.25 58.53 REMARK 500 2 ASN A 3 126.39 62.01 REMARK 500 2 ARG A 5 -72.93 -58.82 REMARK 500 2 ARG A 6 128.00 57.00 REMARK 500 2 ASN A 7 71.74 64.19 REMARK 500 2 LEU A 9 29.20 -157.63 REMARK 500 2 LEU A 10 99.16 25.46 REMARK 500 2 GLN A 11 157.84 58.04 REMARK 500 2 SER A 12 98.32 59.00 REMARK 500 2 MET A 15 72.29 16.29 REMARK 500 2 ASN A 16 152.85 -32.96 REMARK 500 2 MET A 17 -65.96 80.45 REMARK 500 2 ARG A 20 150.58 -33.19 REMARK 500 2 LEU A 24 47.51 -171.21 REMARK 500 2 THR A 25 -79.90 -125.17 REMARK 500 2 ARG A 26 65.93 32.05 REMARK 500 2 LYS A 27 154.46 59.46 REMARK 500 2 PRO A 28 25.37 -68.86 REMARK 500 2 TYR A 29 126.60 48.35 REMARK 500 2 GLN A 30 74.79 27.84 REMARK 500 2 TYR A 32 112.19 48.59 REMARK 500 2 ALA A 33 66.59 -157.79 REMARK 500 2 PRO A 34 80.70 -52.11 REMARK 500 2 ALA A 35 -72.61 -82.51 REMARK 500 2 ARG A 36 59.25 9.23 REMARK 500 2 ASP A 37 -94.45 -33.11 REMARK 500 2 PHE A 38 21.85 -178.62 REMARK 500 2 TYR A 41 15.77 43.75 REMARK 500 REMARK 500 THIS ENTRY HAS 266 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25935 RELATED DB: BMRB DBREF 2NAE A 2 43 UNP P31041 CD28_MOUSE 177 218 SEQADV 2NAE GLY A 1 UNP P31041 EXPRESSION TAG SEQRES 1 A 43 GLY THR ASN SER ARG ARG ASN ARG LEU LEU GLN SER ASP SEQRES 2 A 43 TYR MET ASN MET THR PRO ARG ARG PRO GLY LEU THR ARG SEQRES 3 A 43 LYS PRO TYR GLN PRO TYR ALA PRO ALA ARG ASP PHE ALA SEQRES 4 A 43 ALA TYR ARG PRO CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1