HEADER DNA BINDING PROTEIN 02-FEB-16 2NBA TITLE SOLUTION NMR STRUCTURE OF THE MINOR DNA-UPTAKE PILIN COMP FROM TITLE 2 NEISSERI SUBFLAVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPILIN-TYPE CLEAVAGE/METHYLATION N-TERMINAL DOMAIN COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA SUBFLAVA NJ9703; SOURCE 3 ORGANISM_TAXID: 546268; SOURCE 4 GENE: NEISUBOT_04550; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 28(B) KEYWDS TYPE IV PILIN, DNA-BINDING, DNA TRANSFORMATION, NEISSERIACEAE, DNA KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.BERRY,Y.XU REVDAT 3 29-JUN-16 2NBA 1 JRNL REVDAT 2 01-JUN-16 2NBA 1 JRNL REVDAT 1 18-MAY-16 2NBA 0 JRNL AUTH J.L.BERRY,Y.XU,P.N.WARD,S.M.LEA,S.J.MATTHEWS,V.PELICIC JRNL TITL A COMPARATIVE STRUCTURE/FUNCTION ANALYSIS OF TWO TYPE IV JRNL TITL 2 PILIN DNA RECEPTORS DEFINES A NOVEL MODE OF DNA BINDING. JRNL REF STRUCTURE V. 24 926 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27161979 JRNL DOI 10.1016/J.STR.2016.04.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.1 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-16. REMARK 100 THE RCSB ID CODE IS RCSB104652. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 750 UM [U-98% 13C; U-98% 15N] REMARK 210 COMP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HNCO; 3D CBCA(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 7 -1.49 -159.93 REMARK 500 1 SER A 8 96.12 -47.58 REMARK 500 1 ALA A 9 178.79 -59.78 REMARK 500 1 ASN A 10 40.10 -78.17 REMARK 500 1 LYS A 32 -82.41 -115.66 REMARK 500 1 PHE A 35 -90.90 -101.67 REMARK 500 1 THR A 40 44.17 86.96 REMARK 500 1 PRO A 46 -77.67 -73.80 REMARK 500 1 ALA A 50 -110.86 -98.00 REMARK 500 1 SER A 58 177.60 -43.41 REMARK 500 1 LEU A 65 135.82 -28.88 REMARK 500 1 LYS A 100 -66.50 -100.56 REMARK 500 1 LYS A 102 -95.35 46.75 REMARK 500 1 THR A 106 28.74 38.68 REMARK 500 1 ASP A 107 -66.29 -156.08 REMARK 500 1 GLU A 110 -59.15 -149.94 REMARK 500 1 PHE A 112 79.37 -114.61 REMARK 500 1 ASN A 115 50.20 -161.23 REMARK 500 2 ARG A 7 9.86 -160.08 REMARK 500 2 SER A 8 95.92 -43.14 REMARK 500 2 ALA A 9 -160.40 -75.12 REMARK 500 2 ASN A 10 34.42 -79.34 REMARK 500 2 LYS A 32 -85.67 -118.55 REMARK 500 2 PHE A 35 -68.00 -101.52 REMARK 500 2 THR A 40 45.28 70.92 REMARK 500 2 PRO A 46 -70.89 -80.03 REMARK 500 2 ALA A 50 -111.83 -99.05 REMARK 500 2 SER A 58 175.13 -42.50 REMARK 500 2 LEU A 65 149.80 -32.05 REMARK 500 2 LYS A 102 -93.93 31.45 REMARK 500 2 CYS A 105 -177.55 -58.64 REMARK 500 2 THR A 106 -20.81 69.59 REMARK 500 2 GLU A 110 -50.70 -139.03 REMARK 500 2 PHE A 112 75.80 -109.80 REMARK 500 3 SER A 8 89.96 -47.64 REMARK 500 3 ALA A 9 -165.85 -69.01 REMARK 500 3 ASN A 10 38.71 -81.32 REMARK 500 3 LYS A 32 -84.57 -117.83 REMARK 500 3 PHE A 35 -80.98 -113.74 REMARK 500 3 PRO A 46 -72.88 -77.40 REMARK 500 3 SER A 58 172.36 -41.27 REMARK 500 3 LEU A 65 143.45 -29.92 REMARK 500 3 LYS A 100 -76.76 -80.57 REMARK 500 3 LYS A 102 -141.36 52.80 REMARK 500 3 THR A 106 22.71 43.53 REMARK 500 3 ASP A 107 -31.82 -155.15 REMARK 500 3 GLU A 110 -55.07 -159.75 REMARK 500 3 PHE A 112 69.87 -107.86 REMARK 500 4 SER A 8 94.71 -37.55 REMARK 500 4 ALA A 9 -179.84 -60.71 REMARK 500 REMARK 500 THIS ENTRY HAS 317 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HZ7 RELATED DB: PDB REMARK 900 RELATED ID: 25969 RELATED DB: BMRB DBREF 2NBA A 7 124 UNP D3A5N9 D3A5N9_NEISU 59 176 SEQADV 2NBA HIS A 6 UNP D3A5N9 EXPRESSION TAG SEQRES 1 A 119 HIS ARG SER ALA ASN LEU ARG ALA ALA HIS ALA ALA LEU SEQRES 2 A 119 LEU GLU ASN ALA ARG PHE MET GLU GLN PHE TYR ALA LYS SEQRES 3 A 119 LYS GLY SER PHE LYS LEU THR SER THR LYS TRP PRO GLU SEQRES 4 A 119 LEU PRO VAL LYS GLU ALA GLY GLY PHE CYS ILE ARG MET SEQRES 5 A 119 SER GLY GLN ALA LYS GLY ILE LEU GLU GLY LYS PHE THR SEQRES 6 A 119 LEU LYS ALA VAL ALA LEU ASP ARG GLU ALA GLU PRO ARG SEQRES 7 A 119 VAL LEU ARG LEU ASN GLU SER LEU THR ALA VAL VAL CYS SEQRES 8 A 119 GLY LYS MET LYS GLY LYS GLY SER CYS THR ASP GLY GLU SEQRES 9 A 119 GLU ILE PHE ARG GLY ASN ASP ALA GLU CYS ARG PRO PHE SEQRES 10 A 119 THR GLY HELIX 1 1 ASN A 10 LYS A 32 1 23 SHEET 1 A 6 ILE A 111 PHE A 112 0 SHEET 2 A 6 PHE A 53 SER A 58 1 N MET A 57 O PHE A 112 SHEET 3 A 6 THR A 70 ALA A 75 -1 O VAL A 74 N CYS A 54 SHEET 4 A 6 VAL A 84 ASN A 88 -1 O LEU A 85 N ALA A 73 SHEET 5 A 6 ALA A 93 MET A 99 -1 O CYS A 96 N VAL A 84 SHEET 6 A 6 ASP A 116 PHE A 122 -1 O ARG A 120 N VAL A 95 SSBOND 1 CYS A 54 CYS A 105 1555 1555 2.02 SSBOND 2 CYS A 96 CYS A 119 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1