data_2NBC # _entry.id 2NBC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104654 RCSB ? ? 2NBC PDB pdb_00002nbc 10.2210/pdb2nbc/pdb 25971 BMRB ? 10.13018/BMR25971 D_1000104654 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-01-11 2 'Structure model' 1 1 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature 6 2 'Structure model' pdbx_nmr_software 7 2 'Structure model' pdbx_nmr_spectrometer 8 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_nmr_software.name' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' 5 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NBC _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2016-02-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_id 25971 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chin, Y.K.-Y.' 1 'Touchard, A.' 2 'King, G.F.' 3 # _citation.id primary _citation.title 'Isolation and characterization of a structurally unique beta-hairpin venom peptide from the predatory ant Anochetus emarginatus.' _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1860 _citation.page_first 2553 _citation.page_last 2562 _citation.year 2016 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27474999 _citation.pdbx_database_id_DOI 10.1016/j.bbagen.2016.07.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Touchard, A.' 1 ? primary 'Brust, A.' 2 ? primary 'Cardoso, F.C.' 3 ? primary 'Chin, Y.K.' 4 ? primary 'Herzig, V.' 5 ? primary 'Jin, A.H.' 6 ? primary 'Dejean, A.' 7 ? primary 'Alewood, P.F.' 8 ? primary 'King, G.F.' 9 ? primary 'Orivel, J.' 10 ? primary 'Escoubas, P.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description poneritoxin _entity.formula_weight 1742.087 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'WCASGCRKKRHGGCSC(NH2)' _entity_poly.pdbx_seq_one_letter_code_can WCASGCRKKRHGGCSCX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 CYS n 1 3 ALA n 1 4 SER n 1 5 GLY n 1 6 CYS n 1 7 ARG n 1 8 LYS n 1 9 LYS n 1 10 ARG n 1 11 HIS n 1 12 GLY n 1 13 GLY n 1 14 CYS n 1 15 SER n 1 16 CYS n 1 17 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ants _entity_src_nat.pdbx_organism_scientific 'Anochetus emarginatus' _entity_src_nat.pdbx_ncbi_taxonomy_id 486636 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 NH2 17 17 17 NH2 NH2 A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NBC _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NBC _struct.title 'Resonance assignments and structure determination of poneritoxin, omega-PONTX-Ae1a, from Anochetus emarginatus' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NBC _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'Ants, Anochetus, Neurotoxin, Disulfide bond, Venom, TOXIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2NBC _struct_ref.pdbx_db_accession 2NBC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NBC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2NBC _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 2 A CYS 14 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 6 A CYS 16 1_555 ? ? ? ? ? ? ? 2.070 ? ? covale1 covale both ? A CYS 16 C ? ? ? 1_555 A NH2 17 N ? ? A CYS 16 A NH2 17 1_555 ? ? ? ? ? ? ? 1.329 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 17 ? CYS A 16 ? NH2 A 17 ? 1_555 CYS A 16 ? 1_555 . . CYS 11 NH2 None 'Terminal amidation' 2 CYS A 2 ? CYS A 14 ? CYS A 2 ? 1_555 CYS A 14 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 6 ? CYS A 16 ? CYS A 6 ? 1_555 CYS A 16 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 7 ? LYS A 8 ? ARG A 7 LYS A 8 A 2 CYS A 14 ? SER A 15 ? CYS A 14 SER A 15 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ARG _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 7 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 7 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id SER _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 15 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id SER _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 15 # _pdbx_entry_details.entry_id 2NBC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 6 ? ? -56.16 176.99 2 3 CYS A 6 ? ? -56.08 177.05 3 4 CYS A 6 ? ? -56.08 176.91 4 5 CYS A 6 ? ? -55.86 176.22 5 6 CYS A 6 ? ? -57.05 177.01 6 7 CYS A 6 ? ? -59.19 176.91 7 8 CYS A 6 ? ? -57.70 176.98 8 9 CYS A 6 ? ? -57.66 177.03 9 10 CYS A 6 ? ? -56.71 176.97 10 11 CYS A 6 ? ? -57.47 176.98 11 13 CYS A 6 ? ? -56.08 176.77 12 14 CYS A 6 ? ? -56.27 177.03 13 15 CYS A 6 ? ? -56.35 176.98 14 16 CYS A 6 ? ? -55.88 176.76 15 17 CYS A 6 ? ? -56.07 177.05 16 18 CYS A 6 ? ? -56.65 176.99 17 20 CYS A 6 ? ? -58.95 176.94 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'Best stereochemical property judged by Molprobity' _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NBC _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NBC _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 5 % D2O, 20 mM sodium phosphate, 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '2 mM omega-PONTX-Ae1a, 2 mM AMINO GROUP, 100 % D2O, 20 mM sodium phosphate, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id omega-PONTX-Ae1a-1 2 ? mM ? 1 'AMINO GROUP-2' 2 ? mM ? 1 D2O-3 5 ? % ? 1 'sodium phosphate-4' 20 ? mM ? 1 omega-PONTX-Ae1a-5 2 ? mM ? 2 'AMINO GROUP-6' 2 ? mM ? 2 D2O-7 100 ? % ? 2 'sodium phosphate-8' 20 ? mM ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H NOESY' 1 5 2 '2D 1H-1H NOESY' 1 6 2 '2D 1H-13C HSQC' # _pdbx_nmr_refine.entry_id 2NBC _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 3 CCPN 'peak picking' 'CcpNmr Analysis' ? 4 CCPN 'chemical shift assignment' 'CcpNmr Analysis' ? 5 'Cornilescu, Delaglio and Bax' 'dihedral angle prediction' TALOS ? 6 ? refinement CYANA ? 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CYS N N N N 41 CYS CA C N R 42 CYS C C N N 43 CYS O O N N 44 CYS CB C N N 45 CYS SG S N N 46 CYS OXT O N N 47 CYS H H N N 48 CYS H2 H N N 49 CYS HA H N N 50 CYS HB2 H N N 51 CYS HB3 H N N 52 CYS HG H N N 53 CYS HXT H N N 54 GLY N N N N 55 GLY CA C N N 56 GLY C C N N 57 GLY O O N N 58 GLY OXT O N N 59 GLY H H N N 60 GLY H2 H N N 61 GLY HA2 H N N 62 GLY HA3 H N N 63 GLY HXT H N N 64 HIS N N N N 65 HIS CA C N S 66 HIS C C N N 67 HIS O O N N 68 HIS CB C N N 69 HIS CG C Y N 70 HIS ND1 N Y N 71 HIS CD2 C Y N 72 HIS CE1 C Y N 73 HIS NE2 N Y N 74 HIS OXT O N N 75 HIS H H N N 76 HIS H2 H N N 77 HIS HA H N N 78 HIS HB2 H N N 79 HIS HB3 H N N 80 HIS HD1 H N N 81 HIS HD2 H N N 82 HIS HE1 H N N 83 HIS HE2 H N N 84 HIS HXT H N N 85 LYS N N N N 86 LYS CA C N S 87 LYS C C N N 88 LYS O O N N 89 LYS CB C N N 90 LYS CG C N N 91 LYS CD C N N 92 LYS CE C N N 93 LYS NZ N N N 94 LYS OXT O N N 95 LYS H H N N 96 LYS H2 H N N 97 LYS HA H N N 98 LYS HB2 H N N 99 LYS HB3 H N N 100 LYS HG2 H N N 101 LYS HG3 H N N 102 LYS HD2 H N N 103 LYS HD3 H N N 104 LYS HE2 H N N 105 LYS HE3 H N N 106 LYS HZ1 H N N 107 LYS HZ2 H N N 108 LYS HZ3 H N N 109 LYS HXT H N N 110 NH2 N N N N 111 NH2 HN1 H N N 112 NH2 HN2 H N N 113 SER N N N N 114 SER CA C N S 115 SER C C N N 116 SER O O N N 117 SER CB C N N 118 SER OG O N N 119 SER OXT O N N 120 SER H H N N 121 SER H2 H N N 122 SER HA H N N 123 SER HB2 H N N 124 SER HB3 H N N 125 SER HG H N N 126 SER HXT H N N 127 TRP N N N N 128 TRP CA C N S 129 TRP C C N N 130 TRP O O N N 131 TRP CB C N N 132 TRP CG C Y N 133 TRP CD1 C Y N 134 TRP CD2 C Y N 135 TRP NE1 N Y N 136 TRP CE2 C Y N 137 TRP CE3 C Y N 138 TRP CZ2 C Y N 139 TRP CZ3 C Y N 140 TRP CH2 C Y N 141 TRP OXT O N N 142 TRP H H N N 143 TRP H2 H N N 144 TRP HA H N N 145 TRP HB2 H N N 146 TRP HB3 H N N 147 TRP HD1 H N N 148 TRP HE1 H N N 149 TRP HE3 H N N 150 TRP HZ2 H N N 151 TRP HZ3 H N N 152 TRP HH2 H N N 153 TRP HXT H N N 154 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 GLY N CA sing N N 52 GLY N H sing N N 53 GLY N H2 sing N N 54 GLY CA C sing N N 55 GLY CA HA2 sing N N 56 GLY CA HA3 sing N N 57 GLY C O doub N N 58 GLY C OXT sing N N 59 GLY OXT HXT sing N N 60 HIS N CA sing N N 61 HIS N H sing N N 62 HIS N H2 sing N N 63 HIS CA C sing N N 64 HIS CA CB sing N N 65 HIS CA HA sing N N 66 HIS C O doub N N 67 HIS C OXT sing N N 68 HIS CB CG sing N N 69 HIS CB HB2 sing N N 70 HIS CB HB3 sing N N 71 HIS CG ND1 sing Y N 72 HIS CG CD2 doub Y N 73 HIS ND1 CE1 doub Y N 74 HIS ND1 HD1 sing N N 75 HIS CD2 NE2 sing Y N 76 HIS CD2 HD2 sing N N 77 HIS CE1 NE2 sing Y N 78 HIS CE1 HE1 sing N N 79 HIS NE2 HE2 sing N N 80 HIS OXT HXT sing N N 81 LYS N CA sing N N 82 LYS N H sing N N 83 LYS N H2 sing N N 84 LYS CA C sing N N 85 LYS CA CB sing N N 86 LYS CA HA sing N N 87 LYS C O doub N N 88 LYS C OXT sing N N 89 LYS CB CG sing N N 90 LYS CB HB2 sing N N 91 LYS CB HB3 sing N N 92 LYS CG CD sing N N 93 LYS CG HG2 sing N N 94 LYS CG HG3 sing N N 95 LYS CD CE sing N N 96 LYS CD HD2 sing N N 97 LYS CD HD3 sing N N 98 LYS CE NZ sing N N 99 LYS CE HE2 sing N N 100 LYS CE HE3 sing N N 101 LYS NZ HZ1 sing N N 102 LYS NZ HZ2 sing N N 103 LYS NZ HZ3 sing N N 104 LYS OXT HXT sing N N 105 NH2 N HN1 sing N N 106 NH2 N HN2 sing N N 107 SER N CA sing N N 108 SER N H sing N N 109 SER N H2 sing N N 110 SER CA C sing N N 111 SER CA CB sing N N 112 SER CA HA sing N N 113 SER C O doub N N 114 SER C OXT sing N N 115 SER CB OG sing N N 116 SER CB HB2 sing N N 117 SER CB HB3 sing N N 118 SER OG HG sing N N 119 SER OXT HXT sing N N 120 TRP N CA sing N N 121 TRP N H sing N N 122 TRP N H2 sing N N 123 TRP CA C sing N N 124 TRP CA CB sing N N 125 TRP CA HA sing N N 126 TRP C O doub N N 127 TRP C OXT sing N N 128 TRP CB CG sing N N 129 TRP CB HB2 sing N N 130 TRP CB HB3 sing N N 131 TRP CG CD1 doub Y N 132 TRP CG CD2 sing Y N 133 TRP CD1 NE1 sing Y N 134 TRP CD1 HD1 sing N N 135 TRP CD2 CE2 doub Y N 136 TRP CD2 CE3 sing Y N 137 TRP NE1 CE2 sing Y N 138 TRP NE1 HE1 sing N N 139 TRP CE2 CZ2 sing Y N 140 TRP CE3 CZ3 doub Y N 141 TRP CE3 HE3 sing N N 142 TRP CZ2 CH2 doub Y N 143 TRP CZ2 HZ2 sing N N 144 TRP CZ3 CH2 sing Y N 145 TRP CZ3 HZ3 sing N N 146 TRP CH2 HH2 sing N N 147 TRP OXT HXT sing N N 148 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2NBC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ #